Literature DB >> 35293643

Hydroxy Groups Enhance [2]Rotaxane Anion Binding Selectivity.

Rosemary J Goodwin1, Andrew Docker2, Hugo I MacDermott-Opeskin1, Heather M Aitken1, Megan L O'Mara1, Paul D Beer2, Nicholas G White1.   

Abstract

We report the synthesis of two [2]rotaxanes containing an interlocked three dimensional binding cavity formed from a pyridinium bis(amide) axle component containing two phenol donors, and an isophthalamide based macrocycle. In the competitive solvent mixture 1 : 1 CDCl3  : CD3 OD, one of the receptors exhibits a much higher selectivity preference for chloride than an analogous rotaxane without the hydroxy groups. X-ray crystal structures reveal the chloride anion guest encapsulated within the interlocked binding cavity, though not all of the hydrogen bond donors are utilised. Computational semi-empirical simulations indicate that secondary intermolecular interactions occur between the axle hydroxy hydrogen bond donors and the [2]rotaxane macrocycle components, contributing to a more preorganised binding pocket, which may be responsible for the observed enhanced selectivity.
© 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.

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Keywords:  anions; hydroxy groups; molecular dynamics; preorganisation; rotaxanes

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Year:  2022        PMID: 35293643      PMCID: PMC9321576          DOI: 10.1002/chem.202200389

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.020


Introduction

Anions are involved in nearly all aspects of life, with many enzyme substrates and cofactors being negatively charged. As well as anionic substrates, small inorganic anions play an extensive role throughout the body, with diseases such as cystic fibrosis being linked to the mis‐regulation of chloride in extracellular fluid and bicarbonate being essential to regulate pH levels in the body. Issues also arise from the extensive use of nitrate and phosphate based fertilizers resulting in the eutrophication of waterways. The presence of anions in both environmental pollution and essential bodily functions highlights the need to investigate the binding and sensing of these species. However, there are various characteristics of anions that make them more difficult to bind than cations, as they have a decreased charge to radius ratio, a variety of geometries, higher solvation energies and increased pH sensitivity. By virtue of their inherent three‐dimensional cavities, interlocked molecules have been shown to be potent and selective hosts for anion guest species in competitive protic solvent media.[ , , , ] This is highlighted by Beer and co‐workers’ [2]rotaxane 1 ⋅ PF (Figure 1a) prepared via chloride anion templation, which binds chloride strongly in CDCl3 : CD3OD, and shows selectivity for this anion over more basic oxoanions. This selectivity arises due to the interlocked rotaxane's complementary sized cavity containing orthogonally arranged, convergent amide hydrogen bond donors. Notably, the acyclic non‐interlocked axle component shows the reverse oxoanion selectivity preference. Subsequent work has demonstrated that a variety of other anion recognition motifs including C−H hydrogen bond donors,[ , ] halogen bond donors[ , , ] and chalcogen bond donors can be incorporated into interlocked architectures, and result in strong and selective anion binding.
Figure 1

Structures of a) previously reported rotaxane 1 ⋅ PF, b) hydroxy containing receptors 2 ⋅ BF and 3 ⋅ BF and c) new rotaxanes reported in this work.

Structures of a) previously reported rotaxane 1 ⋅ PF, b) hydroxy containing receptors 2 ⋅ BF and 3 ⋅ BF and c) new rotaxanes reported in this work. The use of O−H hydrogen bond donors for anion recognition has lagged behind that of N−H and even C−H donors,[ , ] which is perhaps surprising given their facile synthesis and potent hydrogen bond donor characteristics (e.g. pK as are typically approximately 10 for aromatic and 15 for aliphatic O−H groups, respectively). The relatively few O−H based receptor systems reported to date have demonstrated effective anion binding,[ , ] anion transport[ , ] and anion‐templated self‐assembly.[28[NW1] ] These qualities indicate that an interlocked host cavity containing O−H hydrogen bond donors could be a potent anion recognition site. We recently studied the simple cationic pyridinium receptors 2 ⋅ BF and 3 ⋅ BF, which contain phenolic O−H groups (Figure 1b). Both acyclic hosts bound a variety of anions in aqueous acetonitrile (90 : 10 CD3CN : D2O), with a preference being shown for sulfate. We also observed that 3 displayed significantly stronger anion binding than an analogous pyridinium receptor without hydroxy groups. Interestingly, molecular dynamics simulations suggested that 3 ⋅ BF interacted with hydrated anions, with the receptor's O−H groups hydrogen bonding to water molecules, which then hydrogen bonded to the anion. These promising results suggested that O−H hydrogen bond donor functionalised [2]rotaxanes would prove to be efficacious anion hosts in competitive protic solvent media, while the unusual binding of the hydrated anions may also be observed. This would be highly interesting as binding hydrated anions underpins the function of most membrane transporter proteins. Herein, we report the synthesis of bis‐phenolic O−H containing axle component [2]rotaxanes 4 and 5 (Figure 1c), one of which exhibits enhanced chloride anion binding strength and selectivity in comparison to an analogous rotaxane without the O−H groups.

Results and Discussion

Synthesis

In order to prepare the target rotaxanes 4 and 5, it was necessary to synthesise appropriate “stopper” components containing amine and hydroxy substituents (Scheme 1). Initially acid catalysed electrophilic aromatic substitution of 3‐aminophenol and tris(p‐t‐butylphenyl)methanol (8) was investigated in an attempt to form meta‐aminophenol stopper 6. However due to difficulties achieving reproducible reaction outcomes, alternative synthetic methods were explored (see Supporting Information for more information on difficulties encountered). To favour substitution para‐ to the amine group, the hydroxy group was acetyl protected to give compound 7. This was then heated with tris(p‐t‐butylphenyl)methyl chloride, which was itself prepared from alcohol 8 and used immediately. Acetyl deprotection of the stopper occurred in situ, giving compound 6 in a yield of 70 %. The ortho‐aminophenol stopper 9 was synthesized from 8 as reported by MacLachlan and co‐workers.
Scheme 1

Synthesis of [2]rotaxanes 4 ⋅ Cl and 5 ⋅ Cl.

Synthesis of [2]rotaxanes 4 ⋅ Cl and 5 ⋅ Cl. The meta‐phenol stopper 6 and ortho‐phenol stopper 9 were then coupled with 3,5‐pyridinedicarboxylic acid to form the neutral axle components 10 and 11 in 56 and 72 % yields, respectively. Methylation of the central pyridine group using trimethyloxonium tetrafluoroborate afforded the cationic axles 12 ⋅ BF and 13 ⋅ BF in high yields and without significant competing O‐methylation. The desired [2]rotaxanes 4 ⋅ Cl and 5 ⋅ Cl were then prepared by chloride anion‐templated Grubbs’ catalysed RCM clipping reactions of the bis‐vinyl functionalized macrocycle precursor 14 around the charged axles 12 ⋅ BF or 13 ⋅ BF . Using an excess (5 equiv.) of 14 provided the [2]rotaxanes in good yields (68 and 51 % for 4 ⋅ Cl and 5 ⋅ Cl, respectively).[ , ] The rotaxanes were purified by preparative thin layer chromatography and characterized by 1H and 13C NMR spectroscopy, high resolution ESI mass spectrometry and X‐ray crystallography (see later). In order to conduct anion binding studies, the chloride salts were exchanged for non‐coordinating anions to give 4 ⋅ PF and 5 ⋅ PF in quantitative yields. Complete anion exchange was confirmed using quantitative 19F NMR spectroscopy against a trifluoroethanol standard (see Supporting Information for details).

Anion recognition studies

The anion binding capabilities of the [2]rotaxanes were studied using 1H NMR titration experiments. Anions as their tetrabutylammonium (TBA) salts were added to solutions of 4 ⋅ PF and 5 ⋅ PF in 1 : 1 CDCl3 : CD3OD. This resulted in significant shifts of the axle components’ pyridinium C−H proton resonances and macrocycle components’ nitroisophthalamide C−H proton resonances (the O−H signals for both rotaxanes were not visible due to H/D exchange, while the broad N−H signals were initially visible but disappeared over the course of the titrations). Figures 2 and 3 show the effect of addition of chloride anion to 4 ⋅ PF and 5 ⋅ PF in 1 : 1 CDCl3 : CD3OD while spectra for the addition of all anions to both rotaxanes are provided in the Supporting Information.
Figure 2

Truncated 1H NMR spectra of 4 ⋅ PF (top) and 5 ⋅ PF (bottom) upon addition of TBA⋅Cl (2.0 mM of rotaxane in 1 : 1 CDCl3 : CD3OD, 600 MHz, 298 K).

Figure 3

Movement of interior pyridinium C−H proton resonance of 4 ⋅ PF and 5 ⋅ PF upon addition of TBA ⋅ Cl in 1 : 1 CDCl3 : CD3OD. Points represent observed data, lines represent 1 : 1 binding isotherms fitted using Bindfit.

Truncated 1H NMR spectra of 4 ⋅ PF (top) and 5 ⋅ PF (bottom) upon addition of TBA⋅Cl (2.0 mM of rotaxane in 1 : 1 CDCl3 : CD3OD, 600 MHz, 298 K). Movement of interior pyridinium C−H proton resonance of 4 ⋅ PF and 5 ⋅ PF upon addition of TBA ⋅ Cl in 1 : 1 CDCl3 : CD3OD. Points represent observed data, lines represent 1 : 1 binding isotherms fitted using Bindfit. Bindfit[ , ] analysis of the interior pyridinium C−H proton titration data using either 1 : 1 or 2 : 1 host:guest binding models determined quantitative association constant values shown in Table 1 (all binding isotherms, weblinks to binding data and fits are provided in the Supporting Information).
Table 1

Association constants (M‐1) for addition of anions[a] to receptors 4 ⋅ PF, 5 ⋅ PF and 1 ⋅ PF in 1 : 1 CDCl3 : CD3OD.

Anion

4 ⋅ PF6

5 ⋅ PF6

1 ⋅ PF6 13, [b]

Cl

6.37(8)×103

7.71(5)×102

4.50×103

I

1.12(6)×103

1.57(4)×102

not measured

OAc

4.00(8)×102

K11=2.10(5)×102

7.25×102

K12=1.75(6)×102

H2PO4

1.22(8) ×102

K11=1.81(11)×103

1.50×103

K12=3.54(11)×102

[a] Anions added as TBA salts, binding constants determined using Bindfit, the asymptotic error is provided at the 95 % confidence interval in parentheses; [b] estimated errors less than 10 %.

Association constants (M‐1) for addition of anions[a] to receptors 4 ⋅ PF, 5 ⋅ PF and 1 ⋅ PF in 1 : 1 CDCl3 : CD3OD. Anion 4 ⋅ PF 5 ⋅ PF 1 ⋅ PF 13, [b] Cl− 6.37(8)×103 7.71(5)×102 4.50×103 I− 1.12(6)×103 1.57(4)×102 not measured OAc− 4.00(8)×102 K11=2.10(5)×102 7.25×102 K12=1.75(6)×102 H2PO4 − 1.22(8) ×102 K11=1.81(11)×103 1.50×103 K12=3.54(11)×102 [a] Anions added as TBA salts, binding constants determined using Bindfit, the asymptotic error is provided at the 95 % confidence interval in parentheses; [b] estimated errors less than 10 %. As shown in Table 1, meta‐substituted 4 ⋅ PF binds chloride with considerable affinity, notably surpassing that of iodide and basic acetate and dihydrogen phosphate. The ortho‐substituted analogue 5 ⋅ PF, exhibits a different anion selectivity profile to 4 ⋅ PF, and shows little selectivity and a considerably diminished K a(Cl−). Interestingly, unlike its meta‐substituted analogue, 5 ⋅ PF exhibits a 2 : 1 host:guest binding stoichiometry for AcO− and H2PO4 −, as determined by analysis of isotherm fit quality. This is presumably attributable to the steric inaccessibility of the binding cavity for these larger anion guest species. Based on the upfield chemical shift perturbations of the internal pyridinium C−H proton, this may indicate these binding events occur outside of the binding pocket to the [2]rotaxane‘s exterior. We suggest that the affinity of 4 ⋅ PF and 5 ⋅ PF for chloride is due to the geometry and size of the anion, as was observed with 1 ⋅ PF, which does not contain any O‐H groups. However the contrast in binding strength between 5 ⋅ PF and 1 ⋅ PF implies that there may be competing processes that hinder the hydroxy‐containing [2]rotaxane from recognizing chloride despite it containing an increased number of hydrogen bond donors compared to 1 ⋅ PF. Contrary to this, 4 ⋅ PF is a more effective chloride selective receptor than both 1 ⋅ PF and 5 ⋅ PF, importantly suggesting that incorporation of meta‐hydroxy substituents assists in both binding affinity and selectivity. Due to the strong and selective chloride anion binding behaviour exhibited by 4 in a competitive organic solvent mixture, further anion recognition experiments were conducted with 4 ⋅ PF and 1 ⋅ PF in 2 : 49 : 49 D2O : CDCl3 : CD3OD (Figure 4). Unfortunately, due to solubility issues the water content could not be increased beyond 2 %. Addition of chloride to 4 ⋅ PF and 1 ⋅ PF resulted in downfield shifts of the interior pyridinium C−H proton resonances, and the data were fitted to a 1 : 1 binding isotherm using the program Bindfit.[ , ] Both of the [2]rotaxanes bound chloride with a moderate affinity, with 4 ⋅ PF binding slightly more strongly than 1 ⋅ PF [K a=2.01(5)×103 M−1 and 1.86(8)×103 M−1 for 4 ⋅ PF and 1 ⋅ PF respectively].
Figure 4

Movement of interior pyridinium C−H proton resonance of 4 ⋅ PF and 1 ⋅ PF upon addition of TBA ⋅ Cl in 2 : 49 : 49 D2O : CDCl3 : CD3OD. Points represent observed data, lines represent 1 : 1 binding isotherms fitted using Bindfit.

Movement of interior pyridinium C−H proton resonance of 4 ⋅ PF and 1 ⋅ PF upon addition of TBA ⋅ Cl in 2 : 49 : 49 D2O : CDCl3 : CD3OD. Points represent observed data, lines represent 1 : 1 binding isotherms fitted using Bindfit.

X‐ray crystallography

Single crystals of 4 ⋅ Cl and 5 ⋅ Cl were obtained by vapour diffusion of diethyl ether into a 1 : 1 CH3OH : CH2Cl2 solution of the [2]rotaxanes; subsequent analysis of the data generated using synchrotron X‐ray crystallography determined the structures shown in Figure 5. In both structures the chloride anion is bound within the 3D cavity of the interlocked host. Rotaxane 4 ⋅ Cl shows only N−H⋅⋅⋅anion (2.48‐3.00 Å) and C−H⋅⋅⋅anion (2.81–2.82 Å) hydrogen bonding. In the solid state, there appears to be no O−H⋅⋅⋅anion hydrogen bonding, with these groups instead interacting with surrounding solvent. Rotaxane 5 ⋅ Cl shows only three N−H⋅⋅⋅anion hydrogen bonds (2.44–2.50 Å) with one O−H⋅⋅⋅anion hydrogen bond also present (2.39 Å). The asymmetric bonding is due to one side of the axle twisting outwards, allowing the hydroxy group to hydrogen bond with the surrounding solvent.
Figure 5

X‐ray crystal structure of a) 4 ⋅ Cl and b) 5 ⋅ Cl. Intermolecular hydrogen bonds are shown as dashed lines. Most hydrogen atoms and solvent molecules are omitted for clarity.

X‐ray crystal structure of a) 4 ⋅ Cl and b) 5 ⋅ Cl. Intermolecular hydrogen bonds are shown as dashed lines. Most hydrogen atoms and solvent molecules are omitted for clarity.

Semiempirical quantum mechanical simulations

To further investigate the influence of the presence and position of the hydroxy groups on rotaxane anion binding strength, computational semi‐empirical simulations of 1, 4 and 5 with the anions PF6 −, Cl− and OAc− were undertaken using the GFN2‐xTB method implemented in xTB 6.4.0. This approach bridges a computational gap between empirical molecular dynamics simulations and ab initio quantum mechanical methods more suited to small system sizes. As mixed solvent systems are not handled by the GFN2‐xTB implicit solvent model, we used methanol as the solvent to best represent the competitive chloroform/methanol mixture used for anion sampling binding studies. While we believe this represents a reasonable approximation, it likely overestimates the competitiveness of the solvent, i.e. may reduce the favourability of binding relative to the solution experiments conducted in 1 : 1 CDCl3 : CD3OD (detailed analysis is provided in the Experimental Section and Supporting Information). During the course of the simulations, it was found that all of the [2]rotaxane systems were highly dynamic, with various hydrogen bonding arrangements possible between the [2]rotaxane and the anion and between the components of the rotaxane (see Supporting Information for further information). When 5 was studied, the dominant conformations involved significant hydrogen bonding between the rotaxane host and anion guest species, with the Cl− or OAc− anions typically interacting outside the rotaxane's cavity. This is consistent with the relatively weaker solution anion binding displayed by rotaxane 5. When 1 and 4 were studied, the guest anion was located within the respective interlocked binding cavity far more commonly (57 % and 48 % of the simulation time respectively). Notably however, even though both rotaxanes bind chloride strongly, the simulations suggest that it is relatively unusual for all four amide donors to be hydrogen bonding to the anion, with this interaction occurring less than 7 % and 1 %, respectively, of the simulation time. Instead, there are often one or two amide donors hydrogen bonding to another component of the rotaxane, generally either the hydroxy groups or carbonyl oxygens. Perhaps surprisingly, the hydroxy donors present in the axle component of 4 appear to rarely participate in endogenous anion binding. Instead, they commonly hydrogen bond to the carbonyl oxygen atoms of the macrocycle (Figure 6a) and this arrangement preorganises the two components of the rotaxane for anion binding. This additional inter‐component preorganisation may explain the increased chloride binding strength observed for 4 compared with 1, which does not contain these hydroxy groups. It is noteworthy that a similar co‐conformation is often observed in the absence of a chloride anion, i.e. 4 ⋅ PF is relatively more preorganised for subsequent guest binding due to these organising interactions (Figure 6b).
Figure 6

Representative structures from semiempirical simulations; (a) 4 ⋅ Cl with anion bound within cavity; (b) 4 ⋅ PF; dotted black lines indicate hydrogen bond interactions (the sum of the van der Wall radii). Stoppers and most hydrogen atoms omitted for clarity.

Representative structures from semiempirical simulations; (a) 4 ⋅ Cl with anion bound within cavity; (b) 4 ⋅ PF; dotted black lines indicate hydrogen bond interactions (the sum of the van der Wall radii). Stoppers and most hydrogen atoms omitted for clarity. When the acetate salts of the 1 and 4 were simulated, all four amide groups of 1 hydrogen bonded to this anion slightly more frequently than in the simulations of 1 ⋅ Cl (20 % vs. 7 % of the simulation time), consistent with this anion's high basicity, while this occurred less frequently with 4 (6 % for 4 ⋅ OAc, 1 % for 4 ⋅ Cl). It is noteworthy that the oxoanion does not fit in the respective interlocked cavity and instead “perches” outside (Figure 7), as has previously been observed in molecular dynamics simulations of oxoanions binding to rotaxanes similar to 1. Again, both hydroxy groups of 4 do not concomitantly participate in significant hydrogen bonding to the anion: with either a single hydroxy group binding to the anion outside of the binding pocket to the [2]rotaxane‘s exterior (41 % of the simulation time), or the hydroxy groups engaging in inter‐component interactions with the macrocycle carbonyl oxygens or the amide groups. In both cases, this appears to rigidify the binding pocket. We hypothesise that these inter‐component interactions act to hinder encapsulation of acetate and may explain the enhanced Cl− vs. OAc− selectivity observed for 4.
Figure 7

Representative structures from semiempirical simulations; (a) 1 ⋅ OAc; (b) 4 ⋅ OAc; most hydrogen atoms omitted for clarity, acetate anion carbon shown in orange.

Representative structures from semiempirical simulations; (a) 1 ⋅ OAc; (b) 4 ⋅ OAc; most hydrogen atoms omitted for clarity, acetate anion carbon shown in orange.

Conclusion

In this work we demonstrate that the incorporation of additional phenolic hydrogen bond donors into an interlocked rotaxane host can significantly enhance anion binding selectivity. In particular, rotaxane 4 ⋅ PF containing a meta‐substituted bis‐phenolic O‐H axle component displays a much higher selectivity preference for chloride than an analogous rotaxane without the hydroxy groups. Computational studies indicated that this selectivity enhancement was due to the axle's hydroxy hydrogen bond donors pre‐organising the rotaxane's macrocycle, increasing the favourability of interactions between the host and the chloride anion. These studies also emphasised the dynamic and flexible nature of guest binding. This work clearly demonstrates the importance and influence of inter‐component preorganisation on guest binding affinity. We suggest that the strategic incorporation of groups designed to preorganise the components of interlocked hosts may lead to even stronger and more selective binding in similar systems.

Experimental Section

General remarks: 3‐Aminophenyl acetate 7, tris(p‐tert‐butylphenyl)methanol 8, amino phenol stopper 9, macrocycle precursor 14 and [2]rotaxane 1 ⋅ PF were prepared as previously described. Other compounds were bought from commercial suppliers and used as received. Details of instrumentation and characterization, as well as of X‐ray crystallography and semi‐empirical simulations are provided in the Supporting Information. Deposition Number(s) 2150001 (for contain(s) the supplementary crystallographic data for this paper. These data are provided free of charge by the joint Cambridge Crystallographic Data Centre and Fachinformationszentrum Karlsruhe Access Structures service. hydroxy stopper 6: Tris(p‐tert‐butylphenyl)methanol (0.32 g, 0.75 mmol, 1.0 mol eqiv.) was dissolved in toluene (0.75 mL). Acetyl chloride (0.23 mL, 2.6 mmol, 3.5 mol equiv.) was added dropwise and the solution subsequently heated to reflux for 30 minutes. After this time, the reaction was allowed to cool and hexane (10 mL) was added and the solution cooled in the freezer for 30 minutes resulting in the precipitation of a white solid. This was isolated by filtration and the resulting solid washed with cold hexane (5 mL) to afford white tris(4‐tert‐butylphenyl)methyl chloride. Once dried the tris(4‐tert‐butylphenyl)methyl chloride and m‐aminophenyl acetate 7 (0.218 g, 1.13 mmol, 1.5 mol equiv.) were added to a Schlenk tube and the solids were mixed thoroughly. The Schlenk tube was then submerged in an oil bath and heated to 160 °C for 3 h. After the 3 h the reaction mixture was cooled and washed with MeOH (20 mL). The resulting white solid was filtered and washed further with MeOH and dried in vacuo. Yield: 0.29 g, 70 %. R : 0.62 (dichloromethane); H NMR (400 MHz, DMSO‐ ) δ 8.45 (br. s, 1H), 7.21 (d, J=8.6 Hz, 6H), 7.01 (d, J=8.6 Hz, 6H), 6.57 (d, J=8.3 Hz, 1H), 5.96 ‐ 5.87 (m, 2H), 4.83 (br. s, 2H), 1.25 (s, 27H). C{ ): δ 168.1, 155.5, 147.1, 143.0, 138.9, 130.1, 128.3, 123.7, 108.8, 107.4, 61.1, 34.0, 31.3; HRMS (ESI: 520.3579, calculated for [C37H45NO ⋅ H]+: 520.3579 Da. hydroxy axle 10: Pyridine‐3,5‐dicarboxylic acid (0.030 g, 0.15 mmol, 0.50 mol equiv), EDC ⋅ HCl (0.070 g, 0.34 mmol, 1.1 mol equiv.) and stopper 6 (0.16 g, 0.31 mmol, 1.0 mol equiv.) were dissolved in DMF (5 mL). Triethylamine (0.060 g, 0.34 mmol, 1.1 mol equiv.) was added gradually and the resulting burgundy solution was stirred for 4 days under nitrogen. A saturated solution of NH4Cl(aq) (10 mL) was then added to the reaction mixture, stirred briefly and then allowed to stand for 1 h. The resulting precipitate was filtered, washed with water (10 mL) and dried in vacuo. The solid was recrystallised from boiling diethyl ether (20 mL) and the resulting pale‐yellow powder was isolated by filtration, washed with cold diethyl ether (2×10 mL), and dried in vacuo (Yield: 0.10 g, 56 %). H NMR (400 MHz, DMSO‐ ) δ 10.49 (s, 2H), 9.20 (s, 4H), 8.70 (s, 1H), 7.30 (s, 2H), 7.26 (d, J=8.4 Hz, 12H), 7.21 (d, J=8.4 Hz, 2H), 7.05 (d, J=8.4 Hz, 12H), 6.96 (d, J=8.4 Hz, 2H), 1.26 (s, 54H). C{ ): δ 147.1, 142.9, 130.1, 123.7, 34.0, 31.2 (due to the limited solubility of this compound, we were unable to obtain satisfactory 13C data for this compound, and no further peaks could be detected). HRMS (ESI: 1192.6907, calculated for [C81H91N3O4 ⋅ Na]+: 1192.6907 Da. hydroxy axle 11: Pyridine‐3,5‐dicarboxylic acid (0.13 g, 0.79 mmol, 0.50 mol equiv.), EDC ⋅ HCl (0.33 g, 1.7 mmol, 1.1 mol equiv.) and stopper 9 (0.82 g, 1.6 mmol, 1.0 mol equiv.) were dissolved in DMF (5 mL). Triethylamine (0.18 g, 1.7 mmol, 1.1 mol equiv.) was added gradually and the resulting burgundy solution was stirred for 4 days under nitrogen. A saturated solution of NH4Cl(aq) (10 mL) was then added to the reaction mixture, stirred briefly and then allowed to stand for 1 hr. The resulting precipitate was filtered, washed with water and dried. The solid was recrystallised from boiling diethyl ether (20 mL) and the resulting pale‐pink powder was isolated by filtration, washed with cold diethyl ether (2×10 mL), and dried in vacuo. Yield: 0.66 g, 72 %. H NMR (400 MHz, DMSO‐ ): δ 9.86 (br. s, 2H), 9.60 (br. s, 2H), 9.20 (br. s, 2H), 8.71 (br. s, 1H), 7.52 (d, J=8.3 Hz, 2H), 7.33 (d, J=8.4 Hz, 12H), 7.13 (d, J=8.4 Hz, 12H), 6.82 (s, 2H), 6.63 (d, J=8.3 Hz, 2H), 1.27 (s, 54H); C{ ): δ 153.6, 147.8, 147.7, 144.1, 143.7, 130.0, 124.4, 122.8, 121.2, 118.3, 63.1, 34.1, 31.1 (due to the limited solubility of this compound, we were unable to obtain satisfactory 13C data for this compound, and no further peaks could be detected); HRMS (ESI: 1170.7087, calculated for [C81H91N3O4 ⋅ H]+: 1170.7082 Da. hydroxy axle 12 ⋅ BF: Neutral axle component 10 (0.042 g, 0.037 mmol, 1.0 mol equiv.) was dissolved in a solution of Me3OBF4 (0.008 g, 0.06 mmol, 1.5 mol equiv.) in dichloromethane (0.5 mL). This was stirred at room temperature under nitrogen for 24 h. Methanol (1.0 mL) was then added and the solution was concentrated under vacuum. The compound was dissolved in dichloromethane (5 mL) and washed with water (5 mL). The organic phase was dried over MgSO4 and concentrated under vacuum. The crude compound was purified by recrystallization in boiling diethyl ether (10 mL) and the resulting yellow powder was isolated by filtration, washed with cold diethyl ether (2×5 mL), and dried in vacuo. Yield: 0.038 g, 82 %. H NMR (400 MHz, CDCl δ 10.84 (br. s, 2H), 10.30 (br. s, 1H), 8.86 (br. s, 2H), 7.30 (s, 2H), 7.25 (d, J=8.3 Hz, 2H), 7.19 (d, J=7.4 Hz, 12H), 7.05 (d, J=7.4 Hz, 12H), 6.92 (d, J=8.6 Hz, 2H), 3.80 (br. s, 3H), 1.21 (s, 54H). C{: δ 158.7, 154.9, 149.4, 148.0, 143.3, 141.4, 130.7, 124.9, 123.9, 112.6, 109.8, 106.3, 61.4, 55.5, 34.5, 31.5 (due to the limited solubility of this compound, we were unable to obtain satisfactory 13C data for this compound, and no further peaks could be detected); HRMS (ESI: 1184.7238, calculated for [C82H94N3O4]+: 1184.7238 Da. hydroxy axle 13 ⋅ BF: Neutral axle component 12 (0.72 g, 0.62 mmol, 1.0 mol equiv.) was dissolved in a solution of Me3OBF4 (0.14 g, 0.93 mmol, 1.5 mol equiv.) in dichloromethane (1.0 mL). This was stirred at room temperature under nitrogen for 24 h. Methanol (10 mL) was then added and the solution was concentrated under vacuum. The compound was diluted with dichloromethane (10 mL) and washed with water (10 mL). The organic phases were then extracted, dried over MgSO4 and concentrated under vacuum. The crude compound was purified by recrystallization from boiling diethyl ether (10 mL) and the resulting yellow powder was isolated by filtration, washed with cold diethyl ether (2×5 mL), and dried in vacuo. Yield: 0.69 g, 87 %. H NMR (400 MHz, DMSO‐ ): δ 10.28 (br. s, 2H), 9.85 (br. s, 2H), 9.56 (s, 2H), 9.39 (s, 1H), 7.59 (d, J=8.5 Hz, 2H), 7.33 (d, J=8.4 Hz, 12H), 7.12 (d, J=8.4 Hz, 12H), 6.85 (s, 2H), 6.65 (d, J=8.4 Hz, 2H), 4.46 (s, 3H), 1.27 (s, 54H) ppm; C{ ): 160.2, 148.8, 147.9, 147.3, 145.5, 143.7, 142.0, 133.3, 130.0, 124.5, 123.5, 122.3, 121.3, 118.2, 63.1, 48.5, 34.1, 31.2.; HRMS (ESI: 1184.7235, calculated for [C82H94N3O4]+: 1184.7238 Da. hydroxy rotaxane 4 ⋅ Cl: Axle component 12 ⋅ BF (0.034 g, 0.027 mmol, 1.0 mol equiv.), TBA ⋅ Cl (0.01 g, 0.04 mmol, 1.5 mol equiv.) and bis‐vinyl macrocycle precursor 14 (0.077 g, 0.12 mmol, 4.4 mol equiv.) were dissolved in dichloromethane (10 mL). The solution was stirred for 30 minutes and then Grubb's II catalyst (0.016 g, 20 % w/w) was added and the solution stirred for 48 h under nitrogen. The solution was then concentrated under vacuum and purified by preparative TLC (ethyl acetate). Yield: 0.034 g, 68 %. H NMR (400 MHz, CDCl: δ 10.19 (br. s, 2H), 9.78 (br. s, 1H), 9.29 (br. s, 1H), 9.13 (br. s, 2H), 8.93 (s, 2H), 8.68 (s, 2H), 7.63–7.57 (m, 2H), 7.41–7.37 (m, 2H), 7.28 (d, J=8.4 Hz, 12H), 7.01 (d, J=8.4 Hz, 12H), 6.91 (d, J=8.8 Hz, 2H), 6.47 (d, J=8.8 Hz, 4H), 6.20 (d, J=8.8 Hz, 4H), 6.11 (s, 2H), 4.74 (s, 2H), 4.41 (s, 3H), 4.13 (d, J=8.2 Hz, 8H), 3.82 ‐ 3.71 (m, 12H), 1.31 (s, 54H); C{: δ 164.7, 158.1, 155.2, 153.4, 152.1, 149.7, 145.6, 140.9, 137.5, 135.5, 134.0, 131.5, 131.3, 130.6, 126.5, 124.9, 115.0, 114.7, 113.1, 110.9, 71.2, 69.6, 68.3, 66.0, 61.3, 49.2 41.0, 34.5, 31.5; HRMS (ESI: 1805.9563, calculated for [C114H129N6O14]+: 1805.9564 Da. hydroxy rotaxane 4 ⋅ PF: 4 ⋅ Cl (0.024 g, 0.013 mmol, 1.0 mol equiv.) was dissolved in dichloromethane (2 mL) and vigorously stirred with sat. NH4PF6(aq) (5 mL) for 2 h. The mixture was extracted with dichloromethane (5 mL) the combined organic phase washed with sat. NH4PF6(aq) (2×5 mL). It was then dried over MgSO4 and concentrated under vacuum to afford 4 ⋅ PF as yellow solid in a quantitative yield (0.025 g, 100 %). H NMR (400 MHz, CDCl: δ 10.17 (br. s, 2H), 9.58 (br. s, 1H), 9.24 (br. s, 1H), 9.14 (br. s, 2H), 8.90 (s, 2H), 8.64 (br. s, 2H), 7.48 (s, 2H), 7.27 (d, J=8.6 Hz, 12H), 7.20 (d, J=8.8 Hz, 2H), 7.05 (d, J=8.6 Hz, 12H), 6.86–6.84(m, 2H), 6.50 (d, J=8.5 Hz, 4H), 6.30 (d, J=8.3 Hz, 4H), 6.08 (s, 2H), 4.40 (s, 3H), 4.11–4.07 (m, 4H), 3.98 ‐ 3.97 (m, 4H), 3.79–3.76 (m, 8H), 3.66–3.64 (m, 4H), 1.30 (s, 54H); P{: δ −144.2 (sep, J=711 Hz) ppm; F{: δ −72.2 (d, J=711 Hz) ppm; HRMS (ESI: 1805.9566, calculated for [C114H129N6O14]+: 1805.9564 Da. hydroxy rotaxane 5 ⋅ Cl: Axle component 13 ⋅ BF (0.030 g, 0.021 mmol, 1.0 mol equiv.), TBA ⋅ Cl (0.01 g, 0.04 mmol, 1.5 mol equiv.) and bis‐vinyl macrocycle precursor 14 (0.081 g, 0.13 mmol, 6.0 mol equiv.) were dissolved in dichloromethane (10 mL). This was stirred for 30 minutes and then Grubb's II catalyst (0.016 g, 20 % w/w) was added and the solution stirred for 48 h under nitrogen. The solution was then concentrated under vacuum and purified by preparative TLC (4 : 1 ethyl acetate:petroleum spirits 60–80 °C). Yield: 0.023 g, 51 %. H NMR (400 MHz, CDCl: δ 10.41 (br. s, 2H), 9.85 (br. s, 1H), 9.21 (br. s, 2H), 9.11 (br. s, 1H), 8.94 (br. s, 2H), 8.42 (s, 2H), 7.95 (s, 2H), 7.51 (d, J=8.0 Hz, 2H), 7.23 (d, J=8.3 Hz, 12H), 7.02 (d, J=8.0 Hz, 12H), 6.82 (s, 2H), 6.69 (d, J=7.9 Hz, 2H), 6.52 (d, J=8.6 Hz, 4H), 6.21 (d, J=8.6 Hz, 4H), 6.04 (s, 2H), 4.46 (s, 3H), 4.10 (d, J=22.4 Hz, 8H), 3.78 (d, J=22.5 Hz, 12H), 1.31 (s, 54H); C{: δ 173.0, 164.7, 159.1, 152.2, 149.0, 148.8, 148.7, 148.5, 143.5, 130.7, 130.5, 130.2, 126.7, 124.8, 124.4, 122.1, 115.3, 114.9, 71.1, 69.6, 68.3, 66.3, 63.6, 49.2, 41.2, 34.6, 31.5 (due to the limited solubility of this compound, we were unable to obtain satisfactory 13C data for this compound, and no further peaks could be detected); HRMS (ESI: 1805.9556, calculated for [C114H129N6O14 ⋅ H]+: 1805.9564 Da. hydroxy rotaxane 5 ⋅ PF: 5 ⋅ Cl (0.020 g, 0.0080 mmol, 1.0 mol equiv.) was dissolved in dichloromethane (2 mL) and vigorously stirred with sat. NH4PF6(aq) (5 mL) for 2 h. The mixture was extracted with dichloromethane (5 mL) and the combined organic phase washed with sat. NH4PF6(aq) (2×5 mL). It was then dried over MgSO4 and concentrated under vacuum to afford 5 ⋅ PF as yellow solid in a quantitative yield (0.016 g, 100 %). H NMR (400 MHz, CDCl: δ 10.36 (br. s, 2H), 9.68 (br. s, 1H), 9.17 (br. s, 2H), 9.07 (br. s, 1H), 8.95 (s, 2H), 8.37 (br. s, 2H), 7.41 (s, 2H), 7.23 (d, J=8.6 Hz, 12H), 7.08–7.06 (m, 2H), 7.04 (d, J=8.6 Hz, 12H), 6.85–6.82 (m, 2H), 6.53 (d, J=8.8 Hz, 4H), 6.27 (d, J=8.8 Hz, 4H), 5.98 (s, 2H), 4.40 (br. s, 3H), 4.02 (br. s, 8H), 3.75–3.72 (m, 12H), 1.30 (s, 54H); P{: δ −144.2 (sep, J=711 Hz) ppm; F{: δ −72.2 (d, J=711 Hz) ppm; HRMS (ESI: 1805.9564, calculated for [C114H129N6O14]+: 1805.9564 Da.

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