Bimolecular nucleophilic substitution (SN2) and elimination (E2) reactions are prototypical examples of competing reaction mechanisms, with fundamental implications in modern chemical synthesis. Steric hindrance (SH) is often considered to be one of the dominant factors determining the most favorable reaction out of the SN2 and E2 pathways. However, the picture provided by classical chemical intuition is inevitably grounded on poorly defined bases. In this work, we try to shed light on the aforementioned problem through the analysis and comparison of the evolution of the steric energy (EST), settled within the IQA scheme and experienced along both reaction mechanisms. For such a purpose, the substitution and elimination reactions of a collection of alkyl bromides (R-Br) with the hydroxide anion (OH-) were studied in the gas phase at the M06-2X/aug-cc-pVDZ level of theory. The results show that, generally, EST recovers the appealing trends already anticipated by chemical intuition and organic chemistry, supporting the role that SH is classically claimed to play in the competition between SN2 and E2 reactions.
Bimolecular nucleophilic substitution (SN2) and elimination (E2) reactions are prototypical examples of competing reaction mechanisms, with fundamental implications in modern chemical synthesis. Steric hindrance (SH) is often considered to be one of the dominant factors determining the most favorable reaction out of the SN2 and E2 pathways. However, the picture provided by classical chemical intuition is inevitably grounded on poorly defined bases. In this work, we try to shed light on the aforementioned problem through the analysis and comparison of the evolution of the steric energy (EST), settled within the IQA scheme and experienced along both reaction mechanisms. For such a purpose, the substitution and elimination reactions of a collection of alkyl bromides (R-Br) with the hydroxide anion (OH-) were studied in the gas phase at the M06-2X/aug-cc-pVDZ level of theory. The results show that, generally, EST recovers the appealing trends already anticipated by chemical intuition and organic chemistry, supporting the role that SH is classically claimed to play in the competition between SN2 and E2 reactions.
Substitution (S) and
elimination (E) reactions of common carbon-based
alkanes (C–X) are, without a doubt, two of the most fundamental
chemical processes making up the basic core of classical organic chemistry,
being archetypal textbook examples of chemical reactivity.[1,2] The former process involves, generally, the direct attack of an
electrophilic scaffold (El) by a nucleophile (Nu), yielding the corresponding
substitution product. On the other hand, the latter comprises the
abstraction of an acidic species, such as a H atom vicinal to an electronegative
moiety (X), by the nucleophile acting now as a base (B), resulting
in the formation of a carbon–carbon double bond (C=C)
that is characteristic of the final alkene product. Both chemical
transformations lead to the extrusion of a secondary species, the
leaving group (L). Despite their simplicity, nucleophilic substitution
and elimination reactions are extremely useful in chemistry, having
tremendous applications in modern synthetic chemistry and biochemistry[3−6] such as the well-known Williamson ether synthesis[2,7] or
the Peterson olefination,[8] to name just
a few. Although several mechanisms have been classically proposed
for these two reactions,[2] one of the most
common ones is the bimolecular nucleophilic substitution or elimination
reaction, referred to as SN2 or E2, respectively.The typical electron push–pull scheme used to understand
these two reaction mechanisms is shown in Figure . It should be noticed that in the particular
case of the E2 mechanism shown here, the leaving group and H atom
at the β-C are considered to be arranged in the usual anticoplanar
disposition, although the less common and usually less energetically
favorable syn elimination can also be observed in certain scenarios.
As can be seen, both bimolecular transformations are assumed to proceed
in a concerted or quasi-concerted way, exhibiting almost simultaneous
bond formation and cleavage processes and thus being stereospecific.
Despite their relative simplicity, the huge conceptual implications
and applications of these chemical transformations have led to their
extensive study both computationally[9−15] and experimentally.[16−21] It is generally accepted that, under common conditions, these two
reaction mechanisms are always in competition, as reflected by the
ratio of the alkene and substituted-alkane products observed, usually
in the final reaction outcome. Therefore and considering the already-mentioned
role that SN2 and E2 reactions play in modern chemistry,
the factors determining their competition have been widely studied
in the literature in multiple scenarios.[22−32] The huge amount of available literature regarding this topic makes
it impossible to outline all of the relevant work in the present article.
However, it is particularly important to highlight the contributions
of Bachrach[33] and Gronert,[34,35] among others. Within this context, the driving forces governing
the most favorable pathway between these two are generally considered[2] to arise as a result of the interplay between
different factors, including the solvent, the temperature, and the
Lewis basicity of the nucleophile/base as recently discussed by Méndez
and co-workers,[36] along with steric effects,
among others. For example, polar protic solvents are known to generally
favor elimination over substitution reactions as a result of the decrease
observed in the nucleophilicity of the attacking species. Such a result
is classically claimed to arise from the increase in the relative
“bulkiness” of the Nu, embedded in a sphere of H-bonded
solvent molecules, which makes it difficult for the latter to approach
the C atom of the electrophile, thus favoring the alternative proton
abstraction inherent to the E2 reaction. Indeed, the latter concept,
steric hindrance (SH), has been used to derive very appealing arguments
that are apparently able to explain the origin behind multiple chemical
phenomena, including the chemopreference between both reaction mechanisms.[2] For instance, Brown and co-workers have extensively
studied[37−39] the impact of steric repulsion in elimination reactions,
particularly its role in the ratio of the Saytzev and Hofmann alkene
products, suggesting that the “Hofmann rule” arises
as a direct manifestation of steric effects experienced in the TS
structure along elimination reactions, something which has also been
studied in cyclic systems,[40] where strain
effects are claimed to be crucial for the anti- or syn- Hofmann eliminations.
Moreover and from a classical perspective, it is generally considered
that bulkier bases and electrophilic skeletons are more likely to
undergo elimination reactions (E) than their less-hindered analogs,
whereas the combination of “naked” nucleophiles and
poorly substituted scaffolds is more prone to exhibit substitution
reactions (S). Such a rationale is directly built on steric arguments:
in elimination reactions, the nucleophile or base experiences only
very subtle clashing arising from the local, and nearly invariant
with the nature of the electrophile, chemical environment faced by
it throughout the proton abstraction process. On the other hand, the
nucleophilic attack on a much more sterically shielded carbon atom
implies that, during substitution reactions, the nucleophile suffers
from considerable steric penalties resulting from the congestion against
the bulky substituents directly bonded to the electrophilic center.
Despite being very appealing, the diffuse nature inherent to those
terms crystallizing out of chemical intuition, such as SH, inevitably
implies that there is no guarantee that the previous arguments are
indeed robust and faithful, so they may actually be built on quicksand.
This is not unique to this particular scenario, but rather a lot of
debate has appeared in the literature in recent years about whether
steric congestion lies behind some commonly observed chemical phenomena,
such as rotational barriers[41−43] and the intriguing conformational
stability of some species.[44−49] Thus, the aforementioned, and similar, problems and controversies
have motivated the development and application of the most rigorous
tools and methodologies within the chemical sciences. Indeed, this
has crystallized in the very prominent implementation of theoretical
and computational chemistry in state-of-the-art research of chemical
reactivity. As far as SH is regarded, many different attempts have
recently been reported to study its influence and role in chemistry[50−55] under the magnifying glass of different theoretical frameworks.
Some examples may include the so-called natural steric analysis, built
on the natural bond orbital (NBO) method,[56] symmetry-adapted perturbation theory (SAPT),[57] quantum mechanical size as developed by Hollett and co-workers,[58] and energetic partitioning schemes such as the
interacting quantum atoms (IQA)[59] and the
energetic decomposition analysis (EDA)[60] approaches. Though some of these strategies have been successfully
utilized to explain the role of SH in a wide range of chemical phenomena,
the picture provided by some of them, especially within the EDA and
other path-dependent schemes, may be prone to inconsistencies and
incorrect definitions, which still limits the chemical understanding
which can be distilled from their application. Fortunately, in one
of our previous contributions[61] we showed
that, as already anticipated by Popelier and co-workers,[55] the IQA energetic partitioning scheme offers
an accurate estimator of steric hindrance, the steric energy EST, which is able to provide a picture in good
agreement with classical chemical intuition that is valid for any
general scenario.
Figure 1
Reaction scheme for the bimolecular substitution and elimination
reactions under study.
Reaction scheme for the bimolecular substitution and elimination
reactions under study.Following the previous
trends and considering the relevance that
SH is claimed to play in common chemical transformations, in this
work we try to elucidate whether there is a large difference in the
steric clashing experienced along common bimolecular elimination (E2)
and substitution (SN2) reactions over carbon-based electrophiles,
paying special attention to the local steric penalty observed by both
the nucleophile/base and the organic scaffold. For such a purpose,
the gas-phase reaction between a collection of simple bromo-alkanes
(R–Br) and the hydroxide anion (OH–) was
selected as a test bed model. It should be noticed that although in
most applications the SN2 and E2 reactions are performed
in solution, it has been suggested[35] that
the interplay of the different factors governing the competition among
substitution and elimination reactions should be equivalent in solution
and in the gas phase, and hence the latter comprises a suitable test
bed model system for our study. Indeed, gas-phase calculations have
been commonly employed in the recent literature to study these and
similar systems.[12,23,30,33,62−65] Moreover, the actual role of solvation in the competition of the
SN2 and E2 mechanisms is still a matter of debate,[66] being a far from trivial topic. Altogether,
the impact of solvent effects in the competition between both mechanisms
is out of the scope of this work, so gas-phase calculations will be
used. This work is organized as follows: First, the real-space steric
energy (EST) term is introduced. Then,
a general overview of the substitution and elimination reaction mechanism
is presented. And finally, the evolution of the SH undergone by the
different fragments involved in both reaction mechanisms is shown
and discussed. The final section gathers the conclusions derived from
this work.
IQA Steric Energy as a Measure of SH
Within the chemistry
realm, SH is often considered to arise as
a repulsive contribution to the interaction between two chemical systems,
supposedly being a direct manifestation of the volume that atoms occupy
in physical space. However, as appealing and useful as the classical
definition of SH may be, its lack of rigor has motivated its redefinition
from numerous theoretical perspectives.[9,55,58,67,68] Unfortunately, most of the aforementioned attempts have been constructed
almost entirely in orbital space, whereas an appealing yet solid estimation
of SH inevitably requires a real-space description.The interacting
quantum atoms (IQA) energetic partitioning scheme,[59] derived within the quantum theory of atoms in
molecules (QTAIM)[69] theory, is a real-space
technique which partitions the total energy of a system aswhere the terms Enet and Eint account for the intra-atomic
energy of a QTAIM basin (Ω) and
the interaction two-body term between a pair of domains (Ω and Ω), respectively. Both intra- and interbasin energies can be further
written as a sum of physically meaningful terms[59] whose discussion will be omitted from the current work
for the sake of simplicity. Among these two contributions, the change
in the net or self-energies (Enet) upon
compression, frequently measured with respect to a reference to energy Enet0, leads to the so-called deformation energieswhich have been proven[55] to provide a
suitable estimation of the steric clashing
undergone by a chemical system. Despite being valid in many scenarios,
deformation energies are heavily dependent on the electron count of
a QTAIM domain, which inevitably biases the whole picture provided
by them. We have recently proven[61] that
a more truthful estimator of SH, the steric energy EST, can be distilled from plain deformation energies by
removing the charge-transfer energy contribution, ECT, aswhere the ECT term
can be readily computed within grand canonical density functional
theory in terms of the ionization cost as measured by the ionization
potential (IP). Altogether, steric energies have been shown to provide
a general and faithful description of steric effects, even in scenarios
prone to exhibit significant electronic redistribution.[61] For such a reason, steric energies will be used
as a measure of SH in the current work. It should be emphasized that,
owing to the novelty of the EST descriptor,
it is not fully addressed whether the latter entirely matches the
picture provided by chemical intuition. However, the first results
have shown[61] that it is only the “static”
description of steric hindrance, that used to classify a system as
being bulky or strained on its own, the one that is not covered by
the EST energy. This should not be viewed
as a drawback of our approximation but rather ass proof of its consistency:
since the definition of EST inevitably
requires a reference, the steric clashing or compression of a system
is not an absolute but rather a relative quantity, being defined only
for an evolving system, such as those found in this work.
Computational
Details
All calculations were performed in the gas phase
at the M06-2X/aug-cc-pVDZ
level of theory. The equilibrium geometries of the species participating
in the reactions were characterized as minima or first-order saddle
points through the analysis of the characteristic eigenvalues of the
Hessian matrix. Geometry optimizations, frequency calculations, and
wave function generations were performed using the Gaussian
09 quantum chemistry package.[70] Similarly, IQA calculations were computed using the in-house-developed
PROMOLDEN code.[71] (See SI section 1 for further details.) The reaction energy profiles
and the progress of the different energy terms analyzed throughout
the reaction are reported many times in terms of the relative ratio
or percentage of the reaction coordinate (χ). In all cases,
the starting reactant complex, involving the original halo-alkane,
was used as a reference for the computations of the deformation (Edef) and steric (EST) energies. Moreover, in the case of elimination reactions, the steric
hindrance of the H atom being abstracted will be analyzed independently
from the remaining organic skeleton. Thus, in the E2 mechanism, the
electrophile (El) accounts for all of the atoms of the substrate except
for the acidic H atom. Finally and for the sake of convenience, the
following color code will be used for the different electrophilic
skeletons: red, [CH3CH2−]; blue, [(CH3)2CH−]; and green, [(CH3)3C−]. When comparing trends along progressively bulkier
species, unless otherwise specified, the values will be reported in
the following order: primary-, secondary-, and tertiary-substituted
electrophiles.
Results and Discussion
Classical Picture of the
SN2 and E2 Reactions
Before analyzing in detail
the evolution of the SH experienced along
the substitution and elimination reactions, it is interesting to briefly
show and discuss their general features. Figure collects the energy profiles of the gas-phase
SN2 and E2 reactions under study for different electrophiles.
Figure 2
Energy
profiles of the gas-phase substitution and elimination reactions
under study (left) along with a close-up, showing the transition from
the staring reactive complex to the TS (right). Solid and dashed lines
are employed to indicate the SN2 and E2 processes, respectively.
Energy
profiles of the gas-phase substitution and elimination reactions
under study (left) along with a close-up, showing the transition from
the staring reactive complex to the TS (right). Solid and dashed lines
are employed to indicate the SN2 and E2 processes, respectively.As can be seen from Figure , all of the studied reactions are exothermic,
with ΔE values on the order of −50.0
and −30 kcal/mol
for SN2 and E2, respectively. Such a finding suggests that
the TS structures resemble the geometries found in the starting reactive
complex, in agreement with the well-known Hammond postulates.[2] Indeed, the previous observation is clearly reflected
in Figures and 4, collecting the optimized geometries of the involved
transition states. Furthermore, there is a very clear and interesting
trend in the evolution of the reaction energy profiles, particularly
as far as the activation energies are regarded. First, as the bulkiness
of the central electrophilic carbon atom increases, so does the activation
barriers (ΔEact) of all of the studied
processes, a result which holds for both substitution (1.8 < 5.2
< 13.0 kcal/mol) and elimination (1.0 < 2.3 < 3.8 kcal/mol)
reactions. Moreover, the aforementioned observation is in good agreement
with chemical intuition and can be classically argued by steric means:
the steric clashing between the reacting moieties increases with the
local substitution of the electrophile, resulting in larger steric
penalties and, consequently, larger activation barriers. It is interesting,
however, that the actual values of the activation barriers, in terms
of electronic energies, are significantly larger for the SN2 reaction pathway. Indeed, the difference in the reaction barriers
of both mechanisms becomes progressively larger as the electrophile
is more sterically hindered, as reflected by the aforementioned ΔEact values. It should be noticed that the observed
trends for the E2 reactions are in partial disagreement with reported
data,[32] according to which the reaction
barriers should slightly decrease with further substitution of the
electrophile. However, such a result has been suggested[32] to be strongly dependent on the basicity or
steric requirements of the attacking nucleophile, which may explain
our obtained results. Nevertheless, the net behavior that is observed
is not unexpected and falls within the accepted chemical rationale;
therefore, a very appealing explanation can be built on the basis
of the differential congestion experienced throughout the different
reaction paths:
Figure 3
Transition states for the gas-phase substitution reactions
with
different electrophiles.
Figure 4
Transition states for
the gas-phase elimination reactions with
different electrophiles.
In substitution
reactions, the attacking hydroxide OH– anion, acting
as a nucleophile, has to overcome the
local steric shielding attributed to the substituents of the electrophilic
scaffold. Thus, as the electrophilic center becomes increasingly crowded,
there is a higher congestion of the central C atom, presumably resulting
in an increase in the energy cost required to go from the starting
reactive complex geometry to the activated complex structure. Moreover,
such a fact can also be used to explain why the ease of substitutions
reactions is specially susceptible to the environment of the geminal
groups directly attached to the reactive C atom.In elimination reactions, the OH– anion
acts as a base and consequently experiences only a very subtle steric
penalty while leading to proton abstraction, which is characteristic
of the elimination process. Similarly, this argument inevitably implies
that the local congestion experienced by the OH– anion will be considerably smaller than that undergone through substitution
reactions and will be less affected by the local environment of the
C atom because the latter is not directly facing the attacking OH–. Indeed, it is worth mentioning that all of the elimination
reactions studied here show almost equivalent evolutions of both the
total reaction energies and reaction forces (SI section 5). Hence, this apparent “invariance”
with the bulkiness of the electrophilic skeleton is satisfying within
the picture provided by chemical intuition, supposedly arising as
a result of the almost identical “local” environment
involved in the proton abstraction and planarization processes.Transition states for the gas-phase substitution reactions
with
different electrophiles.Transition states for
the gas-phase elimination reactions with
different electrophiles.It should be noticed
that, at first glance, the observed trends
in the activation energies are in good agreement with the picture
provided by classical organic chemistry: the SH faced through the
SN2 reaction increases significantly with the bulkiness
of the electrophile, something that occurs via the coupling to the
nearly invariant SH through the competitive E2 reaction, and favors
the latter for larger organic scaffolds. The previous arguments, which
have been questioned in recent years,[32] are absolutely appealing and are in good agreement with classical
organic chemistry. Nevertheless, even though such a rationale can
be used to explain the previously observed trends, it is beyond question
that it may actually be built on quicksand. Consequently, despite
being oddly satisfying, a pure classical steric argument provides
only a partial and probably distorted picture of reality, masking
the role of other more subtle driving forces. In this work, we will
try to shed light on the proposed rationale behind the rules governing
the competition between substitution and elimination processes, paying
particular attention to the evolution of the steric congestion truly
experienced by the different chemical moieties participating in the
already-discussed reactions.
EST throughout
the Reactions
Figures –7 collect
the evolution of the
steric energy experienced by the groups involved in the SN2 and E2 reactions over different substrates.
Figure 5
ESTOH along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates.
Figure 7
ESTEl along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates. For E2 reactions, El is reported
without the acidic H being abstracted.
ESTOH along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates.ESTBr along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates.ESTEl along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates. For E2 reactions, El is reported
without the acidic H being abstracted.Although both mechanisms are generally considered to be concerted,
a careful inspection of the reaction profiles reveals different reaction
stages, something which becomes especially pronounced by analyzing
the progress of the reaction force experienced. (See SI section 5 for more details.) Thus, it is convenient to
discuss the evolution of EST along the
different reaction stages involved in the studied chemical transformations,
as indicated by the vertical lines shown in Figures –7. Moreover
and for the sake of clarity, a schematic representation of the major
geometrical distortion and the accumulation or relief of SH, as indicated
by the red/orange and green regions appearing in Figures –12, respectively, will be shown for each of the reaction steps.
Figure 8
Preparation stage of the SN2 (left) and E2
(right) reactions.
Figure 12
Final
reaction stage of the SN2 (left) and E2 (right)
reactions.
Initially, both reactions involve
the OH– anion approaching the core of the organic
scaffold (El), as shown
in Figure .Preparation stage of the SN2 (left) and E2
(right) reactions.Steric energies of the
abstracted H atom along the elimination
gas-phase reactions with different substrates.Postpreparation
stage of the SN2 (left) and E2 (right)
reactions.Full bond formation and breaking stage
of the SN2 (left)
and E2 (right) reactions.Final
reaction stage of the SN2 (left) and E2 (right)
reactions.This preparation step is characterized
by an almost negligible
evolution of the reaction force (SI section 5) with no significant changes in the local geometries of the El and
Nu species, except for the obvious El–Nu distance. This regime,
extending up to χ ≈ −80 and −50% for the
SN2 and E2 reactions, respectively, is characterized by
barely no changes in EST. Such a result,
in agreement with the aforementioned invariance of the geometrical
parameters (SI Ssection 2), holds for all
of the groups with the particular exception of the acidic H atom along
the E2 reaction which, as shown in Figure , undergoes a noticeable decongestion, close
to −10.0 kcal/mol in the general case, even in this initial
reaction stage. Such steric relief in ESTH, which will be
generally observed along the entire reaction, comes as a result of
the moderate and early elongation of the C–H bond (SI section 2.3). This relieving effect increases
with the bulkiness of the starting skeleton, showing limiting values
of −7.0, −8.0, and −11.0 kcal/mol for the different
substrates. Such a trend arises from the larger “in-molecule”
strain to which the H atom is originally exposed in the presence of
more crowded organic scaffolds and which will be progressively lost
during the elimination reaction as a result of the H-abstraction process.
Figure 9
Steric energies of the
abstracted H atom along the elimination
gas-phase reactions with different substrates.
Beyond the previous point and up
to the TS (χ
= 0.00), the ongoing Nu-El compression leads to a much more evident
distortion of all the geometrical features of the system, as collected
in Figure , something
which will be accompanied by a significant change in EST for all the groups.
Figure 10
Postpreparation
stage of the SN2 (left) and E2 (right)
reactions.
More
specifically, this postpreparation stage is characterized
by the weakening of the C–Br interaction which will ultimately
result in the extrusion of the Br– anion, characteristic
of the C–Br bond cleavage and evidenced by the elongation of
the latter through both reaction mechanisms (SI section 2.2). Such a lengthening of the C–Br bond naturally
leads to a very rapid decrease in ESTBr, as reflected in Figure , showing values of −7,
−10, and −17 kcal/mol and −1, −4, and
−6 kcal/mol, for the substitution and elimination reactions,
respectively, taking place over different substrates. This stabilizing
trend comes as a result of the decompression undergone by the leaving
group, which frees itself from the starting “in-molecule”
crowding. Moreover, the decrease in ESTBr is more pronounced
for bulkier substrates, something which accepts an explanation analogous
to that provided previously for the steric decompression undergone
by the acidic H atom. On the other hand, the decrease in the SH of
L is considerably larger for SN2 reactions, following the
trends observed in the much more prominent elongation of the C–Br
bond (0.20, 0.25, and 0.50 Å), when compared with the elimination
(E2) pathway (0.05, 0.10, and 0.15 Å). The C–OH and H–OH
bond-formation processes taking place simultaneously with this C–Br
bond cleavage for SN2 and E2 reactions, respectively, start
to slowly take place. The further approximation of the nucleophile
to the electrophilic center crystallizes in the very slow increase
in ESTOH of less than 5.0 kcal/mol in the general case, as reflected
in Figure . Such mild
and subtle steric congestion is more relevant for substitution reactions,
particularly in the case of (CH3)3CBr, for which
the OH– anion experiences a more evident compression
(∼10 kcal/mol) arising from the large bulkiness of all of the
spectator groups that must be faced by the latter along the back-side
attack of the electrophile. On the other hand, the E2 mechanism proceeds
with much smaller steric congestion values for the nucleophile along
this regime. Indeed, this observation, which will hold for the entire
reaction and that is moreover nearly invulnerable to the decoration
of the organic scaffold, is in agreement with chemical intuition and
arises from the much milder compression faced by the OH– anion, against a “tiny” H atom, during elimination
reactions. Additionally, as far as the electrophile is regarded, a
very relevant distortion of the organic skeleton takes place along
both reaction mechanisms, though drastically different trends can
be found along these two mechanisms (Figure ). In the case of SN2 reactions,
El undergoes rapid planarization, as reflected by the increase in
the internal angle of the latter (SI section 2.4) to yield planar or quasi-planar TS structures characterized by
internal angles of about 116, 118, and 121° at χ = 0.00.
Interestingly enough, this maximum is not perfectly centered on the
TS as a result of the asymmetric compression induced by the different
nucleophile and leaving group species. This local distortion of the
electrophile, inherent to the characteristic Walden inversion commonly
found in SN2 reactions, is considerably softer in the case
of the E2 reaction, which shows a heavily retarded planarization (111,
114 and 114° at χ = 0.00) (SI section 2.4). This observation, in agreement with chemical intuition,
can account for the very minor nucleophile-induced compression of
the electrophile accompanying the proton abstraction phenomenon. These
findings are, moreover, clearly reflected in the evolution of ESTEl, which experiences a moderate increase of less than 20 kcal/mol
on going from the reactant complex to the TS structure for both reactions.
In either case, the steric stress observed in El is mainly attributed
to the conspiring interplay between the penalizing OH– approximation and the relieving Br– extrusion,
which overall results in the non-negligible compression of the electrophile.
Moreover, the ongoing planarization of El seems to have a forgiving
effect on the total steric stress experienced by the latter. This
result, being in agreement with already-reported data for the sterically
favorable planarization of simple gas-phase alkanes,[72] would explain the intriguing behavior observed in ESTEl,S which, despite building up in the very early stages
of the reaction, is partially counteracted by the electrophile planarization,
leading to small maxima in SH (peaking between 2 and 11 kcal/mol)
even before the TS, at roughly χ = −50.0%. However, the
much less prominent and late distortion of the El geometry in elimination
reactions decreases the favorable effect attributed to the planarization
and explains the slow but steady buildup of ESTEl,E2 within this
regime, arising almost solely from the penalizing OH– compression.
Figure 6
ESTBr along the SN2 (left) and E2 (right) gas-phase
reactions with different substrates.
The previous
preparation and distortion stages are followed
by the concomitant completion of the bond-formation and bond-breaking
processes, leading to the almost fully formed structures of the final
products of the reaction, as shown in Figure .
Figure 11
Full bond formation and breaking stage
of the SN2 (left)
and E2 (right) reactions.
Although
this stage roughly extends up to χ = 53 and 20%
for the SN2 and E2 reactions, respectively, slightly different
trends can be observed at χ = 30 and 10% for both chemical transformations.
The advanced extrusion of the Br– atom accompanying
the cleavage of the C–Br bond should intuitively lead to the
further decrease in ESTBr; however, this is not the case, as
shown in Figure ,
which shows that a moderate compression of L of about 3–5 kcal/mol
takes place throughout both reaction mechanisms. This intriguing burst
in the SH of the Br– atom is observed along both
reaction mechanisms. In the case of the SN2 reaction, it
arises as a side effect of the Walden inversion which inevitably forces
the geminal groups directly attached to the electrophilic C atom toward
the leaving group, accompanying the repyramidalization of the
organic skeleton, as reflected by the evolution of the internal angle
exhibiting values of 108, 114 and 114° (SI section 2.4), and thus leading to a moderate compression of
the Br atom. Interestingly enough, a similar effect is observed along
elimination reactions, though it arises from a slightly different
transformation. In the latter case, the late but abrupt distortion
of the local geometry of the electrophile required to achieve the
characteristic planarity of a C=C double bond leads to the
brief compression of L, induced by the minor rearrangement undergone
by the CR2 moiety along this transformation. It should
be noticed that in both cases this compression rapidly vanishes, being
almost immediately counteracted by the further separation of the free
Br– from the remaining reaction products, leading
once again to the appealing decrease in ESTBr which will be
observed in the remaining stage of the reaction. Additionally, as
far as OH– is regarded, the C–OH and H–OH
bonds are fully formed during this reaction stage, something which
becomes directly evident by the nearly invariant values shown by their
respective bond distances beyond this point. (See SI sections 2.1 and 2.3 for more details.) In E2 reactions,
the interplay between the full cleavage of the C–H bond and
the formation of the OH–H bond leads to a very rapid decompression
of the SH suffered by the H atom, ESTH, as reflected by Figure . This very prominent decompression
of about −20 kcal/mol, measured with respect to the χ
= 0.00 point, arises from the full detachment of the H atom from the
original organic skeleton at the cost of suffering from a much more
subtle compression against the less bulky OH– anion.
Analogously, the H–OH compression also leads to a moderate
congestion of the latter, as shown in Figure , which is almost identical for all of the
studied elimination reactions, with a value of ΔESTOH ≈
30 kcal/mol. This observation is in agreement with classical chemical
intuition and has a very simple explanation: the local environment
seen by the attacking OH– anion throughout the proton
abstraction is almost independent of the remaining organic skeleton.
On the other hand, in SN2 reactions, the formation of the
C–OH bond results in a very rapid burst of the SH experienced
by the OH– anion (about 70 kcal/mol with respect
to the TS), as collected in Figure . This result is once again appealing, arising from
the steric penalty that has to be faced by the nucleophile to go from
a “free” gas-phase species to the “in-molecule”
scenario characteristic of the final R–OH substitution product.
Moreover, a closer inspection of the evolution of ESTOH,S reveals that the OH– anion seems to exhibit
larger steric penalties as the electrophile becomes progressively
more substituted, something which is especially pronounced for the
tertiary substituted species. Furthermore, the SH experienced by the
nucleophile is considerably larger than the one experienced throughout
the E2 pathway. Indeed, the maxima of the ESTOH peak are about
70, 70, and 85 kcal/mol and 32, 31, and 30 kcal/mol for the SN2 and E2 reactions with different electrophiles, respectively.
This observation is in perfect agreement with the chemical rationale
and can be explained by taking into account the difference in the
steric clash undergone through both reaction mechanisms: whereas in
SN2 reactions the attacking species experiences a direct
steric clash with the electrophilic skeleton, E2 reactions proceed
with a more local and subtle clash against a significantly less bulkier
H atom. Finally, as far as the electrophile is regarded, drastically
different trends are observed in both competing mechanisms. In the
case of SN2 reactions, the repyramidalization of
the central C atom takes place, attributed to the already mentioned
Walden inversion. Such an inversion, reflected by the decrease in
the internal angle of the electrophile (SI section 2.4), results, along with the compression attributed to the
C–OH bond formation, in the steady and smooth increase in ESTEl,S showing values of 40, 45, and 70 kcal/mol, as collected
in Figure . These
results suggest that the skeleton of the resulting alcohol (R–OH)
is more sterically crowded than the starting bromoalkane and that
the crowding increases with the substitution of the electrophilic
center, in agreement with chemical intuition. On the other hand, ESTEl,E2 decreases significantly along the remaining reaction stages, with
an ΔE value of about −30 to −40
kcal/mol for all of the skeletons. This chemically appealing trend
is the result of the later planarization of the electrophile which,
together with the Br– and H+ extrusions,
leads to a very relevant relieving effect of the steric crowding of
El. The previous trend will be observed during the remaining reaction
stages.Finally, the very late
stages (up to the reaction completion
at χ = 100.0%) of both reaction mechanisms are characterized
by a much more subtle evolution of the geometrical parameters, as
shown in Figure .This last reaction step is mainly
characterized by the spatial
separation of the already-formed reaction products, as reflected,
for instance, in the trends shown by the C–Br and C–H
distances (SI section 2). It is precisely
this further long-range separation of the final and fully formed reaction
products that leads to a very soft and smooth steric decongestion
of all of the species as reflected by the previous figures, in agreement
with classical chemical intuition.
Conclusions
Steric
hindrance (SH) has been claimed to be one of the most dominant
driving forces governing the competition between SN2 and
E2 reaction mechanisms. Though appealing and useful, the lack of rigor
of chemical intuition weakens the picture and robustness provided
by these and other chemical unicorns. In this article, we have used
the IQA methodology to study the different steric clashes in the competing
nucleophilic substitution and elimination gas-phase reactions between
the OH– anion and different alkyl bromides (R–Br).
The SN2 reactions that are studied are accompanied by considerably
larger SH than the E2 analogs, in general agreement with chemical
intuition. Additionally, the results obtained suggest that the SH
experienced throughout the bimolecular nucleophilic substitution reaction
is more sensitive to structural changes in the electrophile when compared
to the elimination reaction, a fact in agreement with common organic
chemistry textbooks. Altogether and interestingly enough, the results
obtained in the present work support most of the classical chemical
rationale built around the competition of the SN2/E2 mechanisms,
showing how steric energies (EST) are
able to provide highly valuable and quantitative insights into chemical
reactivity.
Authors: Eduardo Carrascosa; Jennifer Meyer; Jiaxu Zhang; Martin Stei; Tim Michaelsen; William L Hase; Li Yang; Roland Wester Journal: Nat Commun Date: 2017-06-21 Impact factor: 14.919
Authors: Benjamin C B Symons; Dominic J Williamson; Campbell M Brooks; Alex L Wilson; Paul L A Popelier Journal: ChemistryOpen Date: 2019-02-08 Impact factor: 2.911