| Literature DB >> 35281992 |
Thomas Mistral1, Pauline Roca2, Christophe Maggia1, Alan Tucholka2, Florence Forbes3, Senan Doyle2, Alexandre Krainik1,4, Damien Galanaud5, Emmanuelle Schmitt6, Stéphane Kremer7, Adrian Kastler1, Irène Troprès4, Emmanuel L Barbier1,4, Jean-François Payen1, Michel Dojat1.
Abstract
Objectives: Determining the volume of brain lesions after trauma is challenging. Manual delineation is observer-dependent and time-consuming and cannot therefore be used in routine practice. The study aimed to evaluate the feasibility of an automated atlas-based quantification procedure (AQP) based on the detection of abnormal mean diffusivity (MD) values computed from diffusion-weighted MR images.Entities:
Keywords: MRI; brain; mean diffusion (MD); segmentation (image processing); traumatic brain injury
Year: 2022 PMID: 35281992 PMCID: PMC8905597 DOI: 10.3389/fneur.2021.740603
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Figure 1Evaluation procedure. Left: five realistic TBI lesion cases were constructed with low (green) and high (red) artificial MD values. The ground truth was predefined for automated and manual lesion delineation comparison. Right: Twelve TBI patients were included, each with three types of MR image. Manual and automated delineation results were quantitatively compared for 10 patients. The ground truth was defined as the consensus of expert annotations (“consensual inter-raters ground truth”), calculated using STAPLE (10).
Figure 2Image processing pipeline from image acquisition to automated detection of mean diffusivity abnormalities.
Figure 3Typical examples of abnormal mean diffusivity (MD) values introduced in diffusion-weighted images (DWI) of two healthy volunteers (realistic TBI phantoms). Top: Good agreement between manual and automated segmentation. Bottom: Moderate agreement between manual and automated segmentation. The artifact (white arrow) was falsely detected as a lesion by one rater. Red, High MD values; Green, Low MD values.
Spatial measurements for the 5 realistic TBI phantoms.
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| Rater 1 vs. GT | 0.75 (0.74 0.78) | 6.7 (4.6 10.7) | 0.5 (0.4 0.5) | 0.69 (0.65 0.69) | 0.88 (0.80 0.90) |
| Rater 2 vs. GT | 0.74 (0.74 0.80) | 8.5 (6.0 10.9) | 0.6 (0.4 0.7) | 0.74 (0.73 0.78) | 0.74 (0.73 0.78) |
| Rater 3 vs. GT | 0.71 (0.68 0.72) | 12.4(10.9 18.5) | 0.8 (0.6 0.8) | 0.68 (0.66 0.70) | 0.75 (0.68 0.76) |
| Rater 4 vs. GT | 0.80 (0.76 0.81) | 8.8 (7.1 17.8) | 0.5 (0.3 0.7) | 0.77 (0.74 0.84) | 0.84 (0.79 0.85) |
| Rater 5 vs. GT | 0.69 (0.66 0.72) | 9.9 (9.2 10.6) | 0.8 (0.7 0.8) | 0.60 (0.55 0.64) | 0.82 (0.78 0.85) |
| Rater consensus vs. GT | 0.75 (0.74 0.80) | 5.1 (4.1 10.7) | 0.6 (0.4 0.6) | 0.66 (0.65 0.72) | 0.88 (0.87 0.90) |
| AQP vs. GT | 0.72 (0.63 0.72) | 24.6 (24.0 32.6) | 1.4 (1.3 1.9) | 0.70 (0.65 0.73) | 0.75 (0.66 0.81) |
| AQP vs. rater consensus | 0.63 (0.55 0.71) | 25.3 (24.7 29.3) | 1.8 (1.5 2.1) | 0.74 (0.71 0.75) | 0.59 (0.48 0.67) |
Each rater, rater consensus and automatic quantification procedure (AQP) were compared to the ground truth (GT) as reference. Data are expressed as median and 25–75th percentiles. Dice and precision obtained from rater consensus and AQP were comparable. HD and ASSD were higher using AQP compared to rater consensus (P < 0.05). HD, Hausdorff Distance; ASSD, Average Symmetrical Surface Distance.
Figure 4The correspondence analysis in brain lesion volume for the five realistic phantom cases for both the raters' consensus (circle) and AQP method (triangle) (y-axis) vs. the ground truth (x-axis). Total lesion volume (low + high MD) in % brain volume of diffusion-weighted images (mean, 95% confidence interval). The dashed line indicates the identity curve.
Characteristics of the 12 patients with severe traumatic brain injury.
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| 1 | Male | 31 | 5 | 5 | Philips Achieva 3 T |
| 2 | Male | 20 | 13 | 9 | Siemens Skyra 3 T |
| 3 | Male | 46 | 9 | 6 | Siemens Avanto 1.5 T |
| 4 | Male | 33 | ND | ND | Siemens Skyra 3 T |
| 5 | Female | 57 | 12 | 7 | Siemens Aera 1.5 T |
| 6 | Male | 30 | 13 | 6 | Siemens Prisma 3 T |
| 8 | Male | 21 | 5 | 3 | Philips Achieva 3 T |
| 9 | Female | 22 | 9 | 4 | GE Signa 1.5 T |
| 10 | Male | 50 | 13 | 5 | GE 1Optima 0.5 T |
| 13 | Male | 37 | 9 | 3 | Siemens Skyra 3 T |
| 16 | Male | 58 | 9 | 6 | Siemens Aera 1.5 T |
| 17 | Male | 71 | 13 | 6 | Siemens Aera 1.5 T |
| Median (IQR) | 35 (28; 52) | 9 ( | 6 ( |
Patients #1 and #10 were excluded from the analysis because one rater delineated brain lesions on FLAIR images. GCS, Glasgow coma score; ND, not determined; IQR, interquartile range.
Figure 5Delineation of brain lesions from diffusion-weighted images (DWI) in 10 TBI patients. The MD map (left), rater consensus (middle) and automated quantification procedure (right) is shown for each patient. S2–S17 refer to the corresponding TBI subject (see Table 3).
Figure 6The correspondence analysis in brain lesion volume for the then TBI cases for both the raters' consensus (y-axis) and AQP method (y-axis). Total lesion volume (low + high MD) in % of the brain volume of diffusion-weighted images (mean, 95% confidence interval). The dashed line indicates the identity curve.
Spatial measurements for the 10 patients with severe traumatic brain injury.
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| 2 | 0.49 | 32.1 | 3.2 | 0.42 | 0.58 | 55.2 | 36.7 | 18.4 | 3.2 | 2.1 |
| 3 | 0.61 | 15.0 | 2.9 | 0.62 | 0.61 | 13.9 | 87.0 | 5.1.9 | 1.0 | 1.0 |
| 4 | 0.73 | 38.4 | 1.9 | 0.64 | 0.86 | 80.9 | 67.8 | 13.1 | 5.6 | 4.2 |
| 5 | 0.78 | 25.3 | 1.0 | 0.78 | 0.78 | 84.6 | 79.2 | 5.3 | 5.8 | 5.8 |
| 6 | 0.71 | 32.9 | 1.1 | 0.72 | 0.70 | 33.1 | 28.4 | 4.7 | 2.4 | 2.5 |
| 8 | 0.52 | 20.1 | 2.1 | 0.67 | 0.43 | 7.2 | 57.5 | 1.5 | 0.4 | 0.71 |
| 9 | 0.43 | 33.7 | 3.7 | 0.49 | 0.39 | 6.9 | 30.3 | 3.9 | 0.4 | 0.6 |
| 13 | 0.56 | 25.6 | 1.8 | 0.49 | 0.64 | 240.6 | 72.8 | 167.7 | 14.7 | 11.3 |
| 16 | 0.78 | 11.8 | 0.8 | 0.82 | 0.74 | 130.3 | 121.0 | 9.2 | 8.0 | 8.9 |
| 17 | 0.33 | 36.8 | 5.8 | 0.22 | 0.64 | 63.7 | 45.1 | 18.4 | 4.2 | 1.5 |
| Median | 0.58 | 28.8 | 2.0 | 0.63 | 0.64 | 59.4 | 41.0 | 7.3 | 3.7 | 2.4 |
| (IQR) | (0.50; 0.72) | (21.4; 33.5) | (1.3; 3.1) | (0.49; 0.70) | (0.59; 0.73) | (19; 84) | (14; 72) | ( | (1.3; 5.7) | (1.3; 5.7) |
The automatic quantification procedure (AQP) is compared to the consensus from 3 raters. HD, Hausdorff Distance; ASSD, Average Symmetrical Surface Distance; IQR, interquartile range.