Yu Duan1,2, Chunyun Zhang3,4, Yuanyuan Wang1, Guofu Chen5,6. 1. School of Marine Science and Technology, Shandong, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, 264209, People's Republic of China. 2. School of Environment, Harbin Institute of Technology, Harbin, 150090, People's Republic of China. 3. School of Marine Science and Technology, Shandong, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, 264209, People's Republic of China. zhangchunyun@hitwh.edu.cn. 4. School of Environment, Harbin Institute of Technology, Harbin, 150090, People's Republic of China. zhangchunyun@hitwh.edu.cn. 5. School of Marine Science and Technology, Shandong, Harbin Institute of Technology (Weihai), Wenhua West Road, 2#, Weihai, 264209, People's Republic of China. chenguofu@hitwh.edu.cn. 6. School of Environment, Harbin Institute of Technology, Harbin, 150090, People's Republic of China. chenguofu@hitwh.edu.cn.
Abstract
BACKGROUND: Aptamers refer to the artificially synthesized nucleic acid sequences (DNA/RNA) that can bind to a wide range of targets with high affinity and specificity, which are generally generated from systematic evolution of ligands by exponential enrichment (SELEX). As a novel method of aptamers screening, whole-cell-SELEX (WC-SELEX) has gained more and more attention in many fields such as biomedicine, analytical chemistry, and molecular diagnostics due to its ability to screen multiple potential aptamers without knowing the detailed structural information of target molecules. METHODS AND RESULTS: In recent years, with the deepening of research on application of aptamers, the traditional WC-SELEX cannot meet the practical application because of long experimental period, complicated operation process and low specificity, etc. Therefore, the development of more efficient methods for screening aptamer is always on the road. This paper summarizes the current research status of WC-SELEX for bacteria, parasites and animal cells, and reviews the latest advances of WC-SELEX techniques that are dependent on novel instruments, materials and microelectronics, including fluorescence-activated cell sorting-assisted SELEX, three-dimensional assisted WC-SELEX, and microfluidic chip system-assisted WC-SELEX. In addition, the application of aptamers targeting cells was discussed. CONCLUSION: Taken together, this review is aimed at providing a reference for WC-SELEX selection and application of aptamer targeting cells.
BACKGROUND: Aptamers refer to the artificially synthesized nucleic acid sequences (DNA/RNA) that can bind to a wide range of targets with high affinity and specificity, which are generally generated from systematic evolution of ligands by exponential enrichment (SELEX). As a novel method of aptamers screening, whole-cell-SELEX (WC-SELEX) has gained more and more attention in many fields such as biomedicine, analytical chemistry, and molecular diagnostics due to its ability to screen multiple potential aptamers without knowing the detailed structural information of target molecules. METHODS AND RESULTS: In recent years, with the deepening of research on application of aptamers, the traditional WC-SELEX cannot meet the practical application because of long experimental period, complicated operation process and low specificity, etc. Therefore, the development of more efficient methods for screening aptamer is always on the road. This paper summarizes the current research status of WC-SELEX for bacteria, parasites and animal cells, and reviews the latest advances of WC-SELEX techniques that are dependent on novel instruments, materials and microelectronics, including fluorescence-activated cell sorting-assisted SELEX, three-dimensional assisted WC-SELEX, and microfluidic chip system-assisted WC-SELEX. In addition, the application of aptamers targeting cells was discussed. CONCLUSION: Taken together, this review is aimed at providing a reference for WC-SELEX selection and application of aptamer targeting cells.
Authors: Hongyu Wang; Xin Li; Lisa A Lai; Teresa A Brentnall; David W Dawson; Kimberly A Kelly; Ru Chen; Sheng Pan Journal: Biochimie Date: 2020-11-23 Impact factor: 4.079