Literature DB >> 35272863

The current toolbox for APOBEC drug discovery.

Michael J Grillo1, Katherine F M Jones2, Michael A Carpenter3, Reuben S Harris3, Daniel A Harki4.   

Abstract

Mutational processes driving genome evolution and heterogeneity contribute to immune evasion and therapy resistance in viral infections and cancer. APOBEC3 (A3) enzymes promote such mutations by catalyzing the deamination of cytosines to uracils in single-stranded DNA. Chemical inhibition of A3 enzymes may yield an antimutation therapeutic strategy to improve the durability of current drug therapies that are prone to resistance mutations. A3 small-molecule drug discovery efforts to date have been restricted to a single high-throughput biochemical activity assay; however, the arsenal of discovery assays has significantly expanded in recent years. The assays used to study A3 enzymes are reviewed here with an eye towards their potential for small-molecule discovery efforts.
Copyright © 2022 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  APOBEC; DNA deaminase inhibitors; chemical probes; drug discovery; screening

Mesh:

Substances:

Year:  2022        PMID: 35272863      PMCID: PMC9018551          DOI: 10.1016/j.tips.2022.02.007

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   17.638


  130 in total

1.  An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers.

Authors:  Steven A Roberts; Michael S Lawrence; Leszek J Klimczak; Sara A Grimm; David Fargo; Petar Stojanov; Adam Kiezun; Gregory V Kryukov; Scott L Carter; Gordon Saksena; Shawn Harris; Ruchir R Shah; Michael A Resnick; Gad Getz; Dmitry A Gordenin
Journal:  Nat Genet       Date:  2013-07-14       Impact factor: 38.330

Review 2.  The spectrum of APOBEC3 activity: From anti-viral agents to anti-cancer opportunities.

Authors:  Abby M Green; Matthew D Weitzman
Journal:  DNA Repair (Amst)       Date:  2019-09-13

3.  Small molecular compounds inhibit HIV-1 replication through specifically stabilizing APOBEC3G.

Authors:  Shan Cen; Zong-Gen Peng; Xiao-Yu Li; Zhuo-Rong Li; Jing Ma; Yue-Ming Wang; Bo Fan; Xue-Fu You; Yu-Ping Wang; Fei Liu; Rong-Guang Shao; Li-Xun Zhao; Liyan Yu; Jian-Dong Jiang
Journal:  J Biol Chem       Date:  2010-04-02       Impact factor: 5.157

4.  Human APOBEC3G-mediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure.

Authors:  Eun-Young Kim; Tanmoy Bhattacharya; Kevin Kunstman; Peter Swantek; Fransje A Koning; Michael H Malim; Steven M Wolinsky
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

5.  Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein.

Authors:  Ann M Sheehy; Nathan C Gaddis; Jonathan D Choi; Michael H Malim
Journal:  Nature       Date:  2002-07-14       Impact factor: 49.962

Review 6.  AIDing the immune system-DIAbolic in cancer.

Authors:  Kerstin-Maike Schmitz; Svend K Petersen-Mahrt
Journal:  Semin Immunol       Date:  2012-07-26       Impact factor: 11.130

7.  An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model.

Authors:  Elena Harjes; Phillip J Gross; Kuan-Ming Chen; Yongjian Lu; Keisuke Shindo; Roni Nowarski; John D Gross; Moshe Kotler; Reuben S Harris; Hiroshi Matsuo
Journal:  J Mol Biol       Date:  2009-04-21       Impact factor: 5.469

8.  APOBEC3B and APOBEC3C are potent inhibitors of simian immunodeficiency virus replication.

Authors:  Qin Yu; Darlene Chen; Renate König; Roberto Mariani; Derya Unutmaz; Nathaniel R Landau
Journal:  J Biol Chem       Date:  2004-10-04       Impact factor: 5.157

9.  Reaction mechanism of zinc-dependent cytosine deaminase from Escherichia coli: a quantum-chemical study.

Authors:  Bianca Manta; Frank M Raushel; Fahmi Himo
Journal:  J Phys Chem B       Date:  2014-05-15       Impact factor: 2.991

10.  Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F.

Authors:  Karen K Siu; Azmiri Sultana; Farshad C Azimi; Jeffrey E Lee
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  1 in total

Review 1.  Unifying Different Cancer Theories in a Unique Tumour Model: Chronic Inflammation and Deaminases as Meeting Points.

Authors:  Pablo Hernández-Camarero; Elena López-Ruiz; Juan Antonio Marchal; Macarena Perán
Journal:  Int J Mol Sci       Date:  2022-08-05       Impact factor: 6.208

  1 in total

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