Literature DB >> 35267145

Building Models of Functional Interactions Among Brain Domains that Encode Varying Information Complexity: A Schizophrenia Case Study.

Ishaan Batta1,2, Anees Abrol3, Zening Fu3, Adrian Preda4, Theo G M van Erp4, Vince D Calhoun3,5.   

Abstract

Revealing associations among various structural and functional patterns of the brain can yield highly informative results about the healthy and disordered brain. Studies using neuroimaging data have more recently begun to utilize the information within as well as across various functional and anatomical domains (i.e., groups of brain networks). However, most whole-brain approaches assume similar complexity of interactions throughout the brain. Here we investigate the hypothesis that interactions between brain networks capture varying amounts of complexity, and that we can better capture this information by varying the complexity of the model subspace structure based on available training data. To do this, we employ a Bayesian optimization-based framework known as the Tree Parzen Estimator (TPE) to identify, exploit and analyze patterns of variation in the information encoded by temporal information extracted from functional magnetic resonance imaging (fMRI) subdomains of the brain. Using a repeated cross-validation procedure on a schizophrenia classification task, we demonstrate evidence that interactions between specific functional subdomains are better characterized by more sophisticated model architectures compared to less complicated ones required by the others for optimally contributing towards classification and understanding the brain's functional interactions. We show that functional subdomains known to be involved in schizophrenia require more complex architectures to optimally unravel discriminatory information about the disorder. Our study points to the need for adaptive, hierarchical learning frameworks that cater differently to the features from different subdomains, not only for a better prediction but also for enabling the identification of features predicting the outcome of interest.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bayesian optimization; Functional connectivity; Hyperparameter optimization; Multilayer perceptron; Schizophrenia; Subdomain analysis; fMRI

Mesh:

Year:  2022        PMID: 35267145      PMCID: PMC9463406          DOI: 10.1007/s12021-022-09563-w

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  28 in total

1.  Auditory oddball deficits in schizophrenia: an independent component analysis of the fMRI multisite function BIRN study.

Authors:  Dae Il Kim; D H Mathalon; J M Ford; M Mannell; J A Turner; G G Brown; A Belger; R Gollub; J Lauriello; C Wible; D O'Leary; K Lim; A Toga; S G Potkin; F Birn; V D Calhoun
Journal:  Schizophr Bull       Date:  2009-01       Impact factor: 9.306

2.  Deep neural networks and kernel regression achieve comparable accuracies for functional connectivity prediction of behavior and demographics.

Authors:  Tong He; Ru Kong; Avram J Holmes; Minh Nguyen; Mert R Sabuncu; Simon B Eickhoff; Danilo Bzdok; Jiashi Feng; B T Thomas Yeo
Journal:  Neuroimage       Date:  2019-10-11       Impact factor: 6.556

3.  Dissociating the roles of the default-mode, dorsal, and ventral networks in episodic memory retrieval.

Authors:  Hongkeun Kim
Journal:  Neuroimage       Date:  2010-01-22       Impact factor: 6.556

4.  Group information guided ICA for fMRI data analysis.

Authors:  Yuhui Du; Yong Fan
Journal:  Neuroimage       Date:  2012-11-27       Impact factor: 6.556

5.  Disintegration of Sensorimotor Brain Networks in Schizophrenia.

Authors:  Tobias Kaufmann; Kristina C Skåtun; Dag Alnæs; Nhat Trung Doan; Eugene P Duff; Siren Tønnesen; Evangelos Roussos; Torill Ueland; Sofie R Aminoff; Trine V Lagerberg; Ingrid Agartz; Ingrid S Melle; Stephen M Smith; Ole A Andreassen; Lars T Westlye
Journal:  Schizophr Bull       Date:  2015-05-04       Impact factor: 9.306

6.  BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment.

Authors:  Jeremy Kawahara; Colin J Brown; Steven P Miller; Brian G Booth; Vann Chau; Ruth E Grunau; Jill G Zwicker; Ghassan Hamarneh
Journal:  Neuroimage       Date:  2016-09-28       Impact factor: 6.556

7.  Multi-Site Diagnostic Classification of Schizophrenia Using Discriminant Deep Learning with Functional Connectivity MRI.

Authors:  Ling-Li Zeng; Huaning Wang; Panpan Hu; Bo Yang; Weidan Pu; Hui Shen; Xingui Chen; Zhening Liu; Hong Yin; Qingrong Tan; Kai Wang; Dewen Hu
Journal:  EBioMedicine       Date:  2018-03-23       Impact factor: 8.143

8.  The Function Biomedical Informatics Research Network Data Repository.

Authors:  David B Keator; Theo G M van Erp; Jessica A Turner; Gary H Glover; Bryon A Mueller; Thomas T Liu; James T Voyvodic; Jerod Rasmussen; Vince D Calhoun; Hyo Jong Lee; Arthur W Toga; Sarah McEwen; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; H Jeremy Bockholt; Syam Gadde; Adrian Preda; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  Neuroimage       Date:  2015-09-11       Impact factor: 6.556

9.  Evidence of a dissociation pattern in default mode subnetwork functional connectivity in schizophrenia.

Authors:  Huaning Wang; Ling-Li Zeng; Yunchun Chen; Hong Yin; Qingrong Tan; Dewen Hu
Journal:  Sci Rep       Date:  2015-09-30       Impact factor: 4.379

10.  NeuroMark: An automated and adaptive ICA based pipeline to identify reproducible fMRI markers of brain disorders.

Authors:  Yuhui Du; Zening Fu; Jing Sui; Shuang Gao; Ying Xing; Dongdong Lin; Mustafa Salman; Anees Abrol; Md Abdur Rahaman; Jiayu Chen; L Elliot Hong; Peter Kochunov; Elizabeth A Osuch; Vince D Calhoun
Journal:  Neuroimage Clin       Date:  2020-08-11       Impact factor: 4.881

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