Literature DB >> 35265950

Information Optimal Control for Single Particle Tracking Microscopy.

Nicholas A Vickers1, Sean B Andersson1,2.   

Abstract

We consider the problem of designing a control policy for a laser scanning microscope (LSM) which will minimize the estimation uncertainty when identifying the state and motion model of a fluorescent biological particle. Using the information optimal design framework we pose an optimization problem which seeks to maximize the Fisher information of the particle's state. We then apply optimal control methods to determine the laser trajectory that maximizes a criterion based on the Fisher information. The resulting optimal control policy is a Bang-Singular control which moves the laser to the set of measurement locations that maximize the rate of information accumulation. Simulations demonstrate the ability of the resulting control system to position the laser to measure the particles location with a minimum uncertainty.

Entities:  

Keywords:  Information Theory; Microscopes; Optimal Control; Optimal Experimental Design; Parameter Estimation; Single Particle Tracking

Year:  2021        PMID: 35265950      PMCID: PMC8903092          DOI: 10.1016/j.ifacol.2021.08.434

Source DB:  PubMed          Journal:  Proc IFAC World Congress


  15 in total

1.  Information bounds and optimal analysis of dynamic single molecule measurements.

Authors:  Lucas P Watkins; Haw Yang
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

Review 2.  A review of progress in single particle tracking: from methods to biophysical insights.

Authors:  Carlo Manzo; Maria F Garcia-Parajo
Journal:  Rep Prog Phys       Date:  2015-10-29

3.  Method for simultaneous localization and parameter estimation in particle tracking experiments.

Authors:  Trevor T Ashley; Sean B Andersson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-11-05

Review 4.  Virus trafficking - learning from single-virus tracking.

Authors:  Boerries Brandenburg; Xiaowei Zhuang
Journal:  Nat Rev Microbiol       Date:  2007-03       Impact factor: 60.633

Review 5.  Exploring dynamics in living cells by tracking single particles.

Authors:  Valeria Levi; Enrico Gratton
Journal:  Cell Biochem Biophys       Date:  2007       Impact factor: 2.194

Review 6.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

7.  Robust real-time 3D single-particle tracking using a dynamically moving laser spot.

Authors:  Shangguo Hou; Xiaoqi Lang; Kevin Welsher
Journal:  Opt Lett       Date:  2017-06-15       Impact factor: 3.776

8.  Tracking single fluorescent particles in three dimensions via extremum seeking.

Authors:  Trevor T Ashley; Eric L Gan; Jane Pan; Sean B Andersson
Journal:  Biomed Opt Express       Date:  2016-08-10       Impact factor: 3.732

Review 9.  Single Particle Tracking: From Theory to Biophysical Applications.

Authors:  Hao Shen; Lawrence J Tauzin; Rashad Baiyasi; Wenxiao Wang; Nicholas Moringo; Bo Shuang; Christy F Landes
Journal:  Chem Rev       Date:  2017-05-18       Impact factor: 60.622

10.  MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells.

Authors:  Klaus C Gwosch; Jasmin K Pape; Francisco Balzarotti; Philipp Hoess; Jan Ellenberg; Jonas Ries; Stefan W Hell
Journal:  Nat Methods       Date:  2020-01-13       Impact factor: 28.547

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  1 in total

Review 1.  Real-Time Feedback-Driven Single-Particle Tracking: A Survey and Perspective.

Authors:  Bertus van Heerden; Nicholas A Vickers; Tjaart P J Krüger; Sean B Andersson
Journal:  Small       Date:  2022-06-27       Impact factor: 15.153

  1 in total

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