| Literature DB >> 35262731 |
Emilie van der Sande1,2,3, Annechien E G Haarman1,2, Wim H Quint1,2, Kirke C D Tadema1,2, Magda A Meester-Smoor1,2, Maarten Kamermans3,4, Chris I De Zeeuw3,5, Caroline C W Klaver1,2,6,7, Beerend H J Winkelman1,2,3,5, Adriana I Iglesias1,8.
Abstract
Refractive errors are common eye disorders characterized by a mismatch between the focal power of the eye and its axial length. An increased axial length is a common cause of the refractive error myopia (nearsightedness). The substantial increase in myopia prevalence over the last decades has raised public health concerns because myopia can lead to severe ocular complications later in life. Genomewide association studies (GWAS) have made considerable contributions to the understanding of the genetic architecture of refractive errors. Among the hundreds of genetic variants identified, common variants near the gap junction delta-2 (GJD2) gene have consistently been reported as one of the top hits. GJD2 encodes the connexin 36 (Cx36) protein, which forms gap junction channels and is highly expressed in the neural retina. In this review, we provide current evidence that links GJD2(Cx36) to the development of myopia. We summarize the gap junctional communication in the eye and the specific role of GJD2(Cx36) in retinal processing of visual signals. Finally, we discuss the pathways involving dopamine and gap junction phosphorylation and coupling as potential mechanisms that may explain the role of GJD2(Cx36) in refractive error development.Entities:
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Year: 2022 PMID: 35262731 PMCID: PMC8934558 DOI: 10.1167/iovs.63.3.5
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Expression of GJD2(Cx36) in Human Tissue
| Database | Tissue |
| Unit | Based On (N) | Method |
|---|---|---|---|---|---|
| GTEx | Pituitary | 10.51 | TPM | 283 | RNA seq |
| Brain-frontal cortex | 2.75 | 209 | |||
| IOWA | Retina | 49.11 | PLIER score | 6 | RNA expression chip |
| Trabecular meshwork | 44.15 | 6 | |||
| Ciliary body | 41.50 | 6 | |||
| Optic nerve | 39.05 | 6 | |||
| Choroid RPE | 32.54 | 6 | |||
| Sclera | 31.18 | 6 | |||
| Lens | 24.77 | 6 | |||
| Iris | 22.60 | 6 | |||
| Optic nerve head | 20.99 | 6 | |||
| Cornea | 11.54 | 6 | |||
| Fantom5 | Pituitary | 33.20 | Scaled tags per million | 1 | RNA seq |
| Retina | 12.50 | Mixed | |||
| HPA Atlas | Adrenal gland | 9.90 | pTPM | 3 | RNA seq |
| Cerebral cortex | 2.40 | 3 | |||
| Pancreas | 1.00 | 2 | |||
| Booij et al. 2009 | RPE | 30.00 (9.30) | percentiles | 6 | RNA expression chip |
| Photoreceptors | 29.60 (3.40) | 6 | |||
| Choroid | 35.80 (10.30) | 6 | |||
| Young et al. 2013 | Adults optic nerve | −0.57 | Avg signal | 6 | RNA expression chip |
| Fetal optic nerve | −2.05 | 15 | |||
| Adult cornea | −0.82 | 6 | |||
| Fetal cornea | −0.40 | 15 | |||
| Adult retina | 8.42 | 6 | |||
| 24 week retina/RPE | 11.10 | 15 | |||
| 12 week Ret/ RPE/Chr | 13.84 | 15 | |||
| Li et al. 2014 | Macular retina | 22.54 | FPKM | 8 | RNA expression chip |
| Macular retinal pigment epithelium/choroid/sclera | 0.00 | 8 | |||
| Peripheral retina | 22.17 | 8 | |||
| Peripheral RPE/Chr/sclera | 0.00 | 8 | |||
| Cowan et al. 2020 | Rods | per = 0.00513%, fov = 0.00353% | NTP | 3 | single cell RNA seq |
| Cones | per = 0.02973%, fov = 0.01649% | 3 | |||
| Horizontal cells | per = 0.00047%, fov = 0.00020% | 3 | |||
| On BCs | per = 0.00165%, fov = 0.00219% | 3 | |||
| OFF BCs | per = 0.00321%, fov = 0.00139% | 3 | |||
| Acs | per = 0.01546%, fov = 0.02133% | 3 | |||
| GCs | per = 0.00094%, fov = 0.00023% | 3 | |||
| Glycinergic Acs | per = 0.00046%, fov = 0.00014% | 3 | |||
| RPE | per = 0.00010%, fov = 0.00005% | 3 |
RNA expression data from expression chips (IOWA, Bergen et al., Young et al., and Stambolian et al.) and RNAseq data (GTEx, Fantom5, HPA atlas, and Cowan et al.). Data from Bergen AAB et al., is shown in percentiles. In Young TL et al., a strong signal is defined as >40. These data include microarray data from gene expression chips. Data from Stambolian DE et al., presents fragments per kilobase of gene per million mapped reads. In Cowan et al., gene expression is shown as a percentage of normalized transcripts.
Abbreviations: GTEx, Genotype-Tissue Expression; IOWA, the ocular tissue database; accessed via https://genome.uiowa.edu/otdb/; HPA, Human Protein Atlas; TPM, transcripts per million; pTPM, protein-coding transcripts per million; Avg signal, average values for each tissue type from raw, un-normalized data; FPKM, fragments per kilobase of gene per million mapped reads; NTP, normalized transcript percentages; Ret, retina; RPE, retinal pigment epithelium; Chr, choroid; BCs, bipolar cells; Acs, amacrine cells; GCs, ganglion cells; per, peripheral; fov, foveal.
Summary of the Studies and Study Design in Which rs634990 and rs524952 Have Been Associated With Myopia or Related Phenotypes
| Variant | Pos (hg38) | Ref | Alt | Discovery Study | Study Design | Outcome | Cohort (N) | Replicated in | Study Design | Trait | Study Cohorts (N) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| rs634990 | 34713872 | T | C | Solouki | GWAS | MSE | RS-I (5,328) and RS-2 and 3, Erasmus Ruchpen Family Study an Twins UK (replication, 10,280). | Stambolian et al. (2013) | GWAS meta-analysis | MSE | AREDS; KORA; FES; OGP-Talana, the Multiethnic Study of Atherosclerosis (7,280 [26,953 replication]) |
| Hysi et al. (2010) | GWAS | Refractive error | TwinUK (4270) | ||||||||
| Verhoeven et al. (2012) | GWAS meta-analysis | MSE | 31 studies from CREAM (49363) | ||||||||
| Schache et al. (2013) | Genetic association study | Refractive error | BMES (1571) | ||||||||
| Schache et al. (2013) | GWAS | Axial length | BMES (1571) | ||||||||
| rs524952 | 34713685 | T | A | Verhoeven et al. (2012) | GWAS meta-analysis | MSE | 31 studies from CREAM (49363) | Stambolian et al. (2013) | GWAS meta-analysis | MSE | AREDS; KORA; FES; OGP-Talana, the Multiethnic Study of Atherosclerosis (7,280 [26,953 replication]) |
| Schache et al. (2013) | Genetic association study | Refractive error | BMES (1571) | ||||||||
| Simpson et al. (2013) | GWAS | Refractive error | AREDS (2000) | ||||||||
| Verhoeven et al. (2013) | GWAS meta-analysis | MSE | 32 studies from CREAM (45,758) | ||||||||
| Kiefer et al. (2013) | Survival analysis | Age of first spectacle wear (23 and me) | 23andMe (45,771) | ||||||||
| Hayashi et al. (2011) | Case-control design | High myopia | Japanese (1125 vs. 366 [cataract] or 929 [healthy]) | ||||||||
| Tideman et al. (2016) | Meta-analysis of linear regression | AL/CR ratio | 18 cohorts from CREAM (26,764) | ||||||||
| Yoshikawa et al. (2014) | GWAS | MSE | The Nagahama Study (3712) | ||||||||
| Fan et al. (2016) | GxE: meta-analysis of linear regression MSE and educational attainment | MSE | 34 studies from CREAM (50,351) | ||||||||
| Tedja et al. (2018) | GWAS | MSE | 37 studies from CREAM and two from 23andMe (discovery 160,420 and replication 95,505) | ||||||||
| Hysi et al. (2020) | GWAS meta-analysis | MSE | UK Biobank, GERA, 23andMe, and CREAM Consortium studies (542,934) |
Abbreviations: RS, Rotterdam Study; MSE, mean spherical equivalent; AREDS, Age-Related Eye Disease Study; KORA, Cooperative Health Research in the Region of Augsburg; FES, Framingham Eye Study; OGP-Talana, the Ogliastra Genetic Park-Talana; CREAM, Consortium for refractive error and myopia; BMES, Blue Mountains Eye Study; AL/CR, axial length corneal radius ratio; GERA, Genetic Epidemiology Research on Adult Health and Aging.
Variants in LD With rs634990
| SNPs in LD With rs634990 Showing Evidence to be Regulatory Variants | HaploReg. Version 4.1 Annotation | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Variant | Identified in (PMID) | Pos (hg38) | Ref | Alt | LD (r2, in Relation to rs634-990) | LD (D', in Relation to rs634-990) | GERP Cons | Prom-oter Histone Marks (Roa-dmap) | Enha-ncer Histone Marks (Road-map) | DNA se | Proteins Bound | Motifs Changed | eQTL Results | Ref Seq Genes | dbSNP Functional Annotation | Query SNP Overlaps With ENC-ODE Data (≥ 2 Elem-ents)± | Query SNP overlaps with ENC-ODE Data (≥ 3 Elem-ents)± | Regu-lome DB v. Regu-lome DB_Score |
| rs634990 | 20835239, 23474815, 20835236, 22665138, 23131718 | 34713872 | T | C | NA | NA | yes | HRT | KID | 6 altered motifs | 2 hits | 39kb 3' of GJD2 |
| yes | yes |
| ||
| rs524952 | 22665138, 23474815, 23131718, 24227913, 23396134, 23468642, 21436269, 27611182, 25335978, 27020472, 29808027, 32231278 | 34713685 | T | A | 1 | 1 | HRT | AFP1,SIX5 | 2 hits | 39kb 3' of GJD2 |
| yes | yes |
| ||||
| rs685352 | 22665138, 23474815, 23131718, 24227913 | 34716134 | A | G | 0.86 | 0.99 | LIV, PANC, MUS | 5 altered motifs | 2 hits | 36kb 3' of GJD2 |
| yes | yes |
| ||||
| rs688220 | 22665138, 23474815, 23131718, 24227913 | 34706674 | G | A | 0.6 | 0.84 | BLD,BRN | 2 hits | 46kb 3' of GJD2 |
| yes | no |
| |||||
| rs560766 | 22665138, 23474815, 23131718, 24227913 | 34708741 | G | A | 0.6 | 0.84 | BRN, HRT, PANC | 7 tissues | 15 tissues | CTCF,GATA1 | Msx-1 | 2 hits | 44kb 3' of GJD2 |
| yes | yes |
| |
| rs619788 | 22665138, 23474815, 23131718, 24227913 | 34702905 | C | A | 0.58 | 0.83 | yes | HNF1 | 2 hits | 50kb 3' of GJD2 |
| yes | no |
| ||||
| rs580839 | 22665138, 23474815, 23131718, 24227913 | 34706628 | G | A | 0.58 | 0.84 | BLD,BRN | CACD,GR | 2 hits | 46kb 3' of GJD2 |
| yes | yes |
| ||||
| rs9920099 | 34701123 | C | T | 0.57 | 0.83 | 5 tissues | 5 tissues | CEBPB | 4 altered motifs | 1 hit | 51kb 3' of GJD2 |
| yes | yes |
| |||
| rs7176510 | 22665138, 23474815, 23131718, 24227913 | 34707278 | C | T | 0.57 | 0.83 | 20 altered motifs | 1 hit | 45kb 3' of GJD2 |
| yes | no |
| |||||
| rs4924134 | 22665138, 23474815, 23131718, 24227913 | 34702364 | A | G | 0.56 | 0.83 | BRN | 8 altered motifs | 1 hit | 50kb 3' of GJD2 |
| yes | yes |
| ||||
| rs11073058 | 22665138, 23474815, 23131718, 24227913, 24144296, 25823570 | 34697425 | G | T | 0.54 | 0.81 | ESC, IPSC, BLD | CHD2 | 1 hit | 55kb 3' of GJD2 |
| yes | yes |
| ||||
| rs11073059 | 22665138, 23474815, 23131718, 24227913 | 34697473 | T | A | 0.54 | 0.81 | ESC, IPSC, BLD | GR | 1 hit | 55kb 3' of GJD2 |
| yes | yes |
| ||||
| rs11073060 | 22665138, 23474815, 23131718, 24227913 | 34697650 | C | A | 0.54 | 0.81 | IPSC, BLD | 10 altered motifs | 1 hit | 55kb 3' of GJD2 |
| yes | yes |
| ||||
| rs7163001 | 22665138, 23474815, 23131718, 24227913 | 34698373 | G | A | 0.54 | 0.82 | Arid5b, HDAC2, Nanog | 1 hit | 54kb 3' of GJD2 |
| yes | no |
| |||||
| rs678510 | 34711108 | T | C | 0.51 | 0.99 | ESDR | CCNT2, GATA, TATA | 2 hits | 41kb 3' of GJD2 |
| yes | yes |
| |||||
| rs652158 | 34719259 | A | G | 0.49 | 0.79 | 10 tissues | HRT, KID, CRVX | 4 altered motifs | 2 hits | 33kb 3' of GJD2 |
| yes | yes |
| ||||
| rs684374 | 34716391 | G | C | 0.47 | 0.99 | MUS | 6 tissues | 6 tissues | GR | GR, Myf, TCF12 | 2 hits | 36kb 3' of GJD2 |
| yes | yes |
| ||
| rs513587 | 34709645 | T | C | 0.46 | 0.99 | 8 tissues | 10 altered motifs | 1 hit | 43kb 3' of GJD2 |
| yes | yes |
| |||||
| rs8032019 | 22665138, 23474815, 23131718, 24227913 | 34699289 | A | G | 0.44 | 0.85 | 13 altered motifs | 53kb 3' of GJD2 |
| no | no |
| ||||||
| rs3932344 | 34708040 | T | C | 0.44 | 0.86 | 6 altered motifs | 44kb 3' of GJD2 |
| no | no |
| |||||||
| rs4924135 | 34702599 | A | C | 0.43 | 0.85 | 4 altered motifs | 50kb 3' of GJD2 |
| no | no |
| |||||||
| rs6495707 | 34691197 | G | A | 0.34 | 0.82 | 6 tissues | 11 tissues | STAT3 | Smad3, VDR | 61kb 3' of GJD2 |
| yes | yes |
| ||||
| rs56062557 | 34692394 | T | G | 0.34 | 0.82 | BLD | GR, NF-kappaB | 60kb 3' of GJD2 |
| yes | no |
| ||||||
| rs17237002 | 34692429 | C | G | 0.34 | 0.82 | BLD | Nanog, Sox | 60kb 3' of GJD2 |
| yes | no |
| ||||||
| rs1370156 | 25233373 | 34692682 | G | C | 0.21 | 0.67 | BLD | Pax-5 | 1 hit | 60kb 3' of GJD2 |
| yes | yes |
| ||||
| rs649782 | 34712867 | A | C | 0.21 | 0.63 | 10 altered motifs | 40kb 3' of GJD2 |
| no | no |
| |||||||
SNPs in LD with rs634990 showing evidence to be regulatory variants or which were identified in certain study. Using the software HaploReg (version 4.1) (Ward and Kellis 2012) and RegulomeDB version 1.1 (Boyle et al. 2012), we investigated regulatory annotations for variants in LD (r2 > 0.2, 1000 genomes CEU) with the refractive error SNPs annotated to GJD2(Cx36). Using HaploReg version 4.1 all variants were extracted and examined for overlap with regulatory elements of the ENCODE data. RegulomeDB score was used to assess their potential functional consequence, as described previously (Schaub et al. 2012).
Figure 1.Structure and conservation of . Panel (A) shows the GJD2(Cx36) protein consisting of four transmembrane domains (TMD1-4), alternated by two extracellular loops (EL1-2), with the phosphorylation sites on the intracellular loop (IL; Ser110) and on the C-terminus (COOH; Ser293, Ser276 for zebrafish). Panel (B) shows the conservation of GJD2(Cx36) throughout commonly used species for myopia research. The phylogenetic tree in vertebrate lineages of reptiles and birds shows two subfamilies, GJD2(Cx35/Cx36) and GJD1(Cx34). The latter paralog is not present in mammals, whereas in teleost fish four functional orthologs have been identified (gjd1a(Cx34.1), gjd1b(Cx34.7), gjd2b(Cx35.1), and gjd2a(Cx35.5)). Panel (C) shows that for mammalian species 98% to 100% and for zebrafish 70% to 83% of the GJD2(Cx35/Cx36) protein is conserved relative to the human protein. Intergenic variation is mainly located in the intracellular loop (red trace) and in the C-terminus (final black trace), whereas the two phosphorylation sites are conserved throughout all species *P).
Figure 2.Gap junction proteins in the human retina and their coupling with Panel (A) shows the gap junction proteins present in the different retinal layers. Panels (B) and (C) show the gap junction coupling that contains GJD2(Cx36). Dot colors define the different gap junction proteins. Numbers represent the species for which the gap junction locations have been described. Gap junctions are detected at the protein level, when additionally detected on RNA (including cDNA) level, color dots are marked with an asterisk. Homotypic GJD2(Cx36)-containing gap junctions are present between dendrites of alpha ganglion cells, between dendrites of AII amacrine cells, between (ON/OFF) cone bipolar cells, between cones, and between rods and cones. For the latter homotypic configuration, most evidence localizes GJD2(Cx36) on the cone side. GJA7(Cx45) is the only gap junction protein forming channels with GJD2(Cx36). Heterotypic channels are present between subtypes of amacrine cells (providing GJD2(Cx36)) and (ON/OFF) cone bipolar cells (providing GJA7(Cx45)). GJA1(Cx43), GJA4(Cx37), and GJA10 (hCx62, mCx57, and pCx60) are the remaining gap junction proteins in the retina, localized between horizontal cells, but these do not colocalize with GJD2(Cx36). In addition to the gap junctions visualized in the figure, GJD2(Cx36) gap junctions have been reported between amacrine cells and alpha ganglion cells. Abbreviations: A, amacrine cell; BC, bipolar cells; C, cone photoreceptor cell; GC, ganglion cell; GCL, ganglion cell layer; H, horizontal cell; ILM, inner limiting membrane; INL, inner nuclear layer; IPL, inner plexiform layer; IS, inner segment; NFL, optic nerve fiber layer; OLM, outer limiting membrane; ONL, outer nuclear layer; OPL, outer plexiform layer; OS, outer segment; R, rod photoreceptor cell; RPE, retinal pigmented epithelium.
Figure 3.Gap junction proteins (connexins) in the eye. Color dots define the different gap junction proteins. Numbers represent the species for which the gap junction locations have been described. Gap junctions are detected at the protein level, when additionally detected on RNA (including cDNA) level color dots are marked with an asterisk. GJD2(Cx36) is expressed in the retina exclusively. GJA1(Cx43) is widely expressed throughout the eyes and is identified in all ocular segments.
Figure 4.Overview of potential mechanisms for GJD2(Cx36) (marked red) causing myopia. Green arrows indicate a positive (i.e. stimulatory) effect; red arrows a negative (i.e. inhibiting) effect. Dotted lines indicate hypothesized mechanisms not fully advocated yet by the literature but mentioned in the current manuscript as possible mechanisms. Conditions highlighted with black triangles are frequently linked in the literature with decreased myopia/axial elongation, whereas white triangles are associated with increased myopia/axial elongation.