Literature DB >> 35259932

Technologies to Assess Drug Response and Heterogeneity in Patient-Derived Cancer Organoids.

Melissa C Skala1,2,3, Dustin A Deming3,4,5, Jeremy D Kratz3,4,6.   

Abstract

Patient-derived cancer organoids (PDCOs) are organotypic 3D cultures grown from patient tumor samples. PDCOs provide an exciting opportunity to study drug response and heterogeneity within and between patients. This research can guide new drug development and inform clinical treatment planning. We review technologies to assess PDCO drug response and heterogeneity, discuss best practices for clinically relevant drug screens, and assert the importance of quantifying single-cell and organoid heterogeneity to characterize response. Autofluorescence imaging of PDCO growth and metabolic activity is highlighted as a compelling method to monitor single-cell and single-organoid response robustly and reproducibly. We also speculate on the future of PDCOs in clinical practice and drug discovery.Future development will require standardization of assessment methods for both morphology and function in PDCOs, increased throughput for new drug development, prospective validation with patient outcomes, and robust classification algorithms.

Entities:  

Keywords:  assay development; cancer treatment; optical microscopy; organotypic cultures; precision medicine; single-cell assessment

Mesh:

Year:  2022        PMID: 35259932      PMCID: PMC9177801          DOI: 10.1146/annurev-bioeng-110220-123503

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   11.324


  86 in total

1.  Fluorescence lifetime imaging of free and protein-bound NADH.

Authors:  J R Lakowicz; H Szmacinski; K Nowaczyk; M L Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1992-02-15       Impact factor: 11.205

Review 2.  Mechanisms and Implications of Metabolic Heterogeneity in Cancer.

Authors:  Jiyeon Kim; Ralph J DeBerardinis
Journal:  Cell Metab       Date:  2019-09-03       Impact factor: 27.287

3.  A Living Biobank of Breast Cancer Organoids Captures Disease Heterogeneity.

Authors:  Norman Sachs; Joep de Ligt; Oded Kopper; Ewa Gogola; Gergana Bounova; Fleur Weeber; Anjali Vanita Balgobind; Karin Wind; Ana Gracanin; Harry Begthel; Jeroen Korving; Ruben van Boxtel; Alexandra Alves Duarte; Daphne Lelieveld; Arne van Hoeck; Robert Frans Ernst; Francis Blokzijl; Isaac Johannes Nijman; Marlous Hoogstraat; Marieke van de Ven; David Anthony Egan; Vittoria Zinzalla; Jurgen Moll; Sylvia Fernandez Boj; Emile Eugene Voest; Lodewyk Wessels; Paul Joannes van Diest; Sven Rottenberg; Robert Gerhardus Jacob Vries; Edwin Cuppen; Hans Clevers
Journal:  Cell       Date:  2017-12-07       Impact factor: 41.582

4.  Organoid models of human and mouse ductal pancreatic cancer.

Authors:  Sylvia F Boj; Chang-Il Hwang; Lindsey A Baker; Iok In Christine Chio; Dannielle D Engle; Vincenzo Corbo; Myrthe Jager; Mariano Ponz-Sarvise; Hervé Tiriac; Mona S Spector; Ana Gracanin; Tobiloba Oni; Kenneth H Yu; Ruben van Boxtel; Meritxell Huch; Keith D Rivera; John P Wilson; Michael E Feigin; Daniel Öhlund; Abram Handly-Santana; Christine M Ardito-Abraham; Michael Ludwig; Ela Elyada; Brinda Alagesan; Giulia Biffi; Georgi N Yordanov; Bethany Delcuze; Brianna Creighton; Kevin Wright; Youngkyu Park; Folkert H M Morsink; I Quintus Molenaar; Inne H Borel Rinkes; Edwin Cuppen; Yuan Hao; Ying Jin; Isaac J Nijman; Christine Iacobuzio-Donahue; Steven D Leach; Darryl J Pappin; Molly Hammell; David S Klimstra; Olca Basturk; Ralph H Hruban; George Johan Offerhaus; Robert G J Vries; Hans Clevers; David A Tuveson
Journal:  Cell       Date:  2014-12-31       Impact factor: 41.582

5.  Long-term, hormone-responsive organoid cultures of human endometrium in a chemically defined medium.

Authors:  Margherita Y Turco; Lucy Gardner; Jasmine Hughes; Tereza Cindrova-Davies; Maria J Gomez; Lydia Farrell; Michael Hollinshead; Steven G E Marsh; Jan J Brosens; Hilary O Critchley; Benjamin D Simons; Myriam Hemberger; Bon-Kyoung Koo; Ashley Moffett; Graham J Burton
Journal:  Nat Cell Biol       Date:  2017-04-10       Impact factor: 28.824

6.  Cellular Metabolic Heterogeneity In Vivo Is Recapitulated in Tumor Organoids.

Authors:  Joe T Sharick; Justin J Jeffery; Mohammad R Karim; Christine M Walsh; Karla Esbona; Rebecca S Cook; Melissa C Skala
Journal:  Neoplasia       Date:  2019-05-09       Impact factor: 5.715

7.  An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity.

Authors:  Camilla Calandrini; Frans Schutgens; Rurika Oka; Thanasis Margaritis; Tito Candelli; Luka Mathijsen; Carola Ammerlaan; Ravian L van Ineveld; Sepide Derakhshan; Sanne de Haan; Emmy Dolman; Philip Lijnzaad; Lars Custers; Harry Begthel; Hindrik H D Kerstens; Lindy L Visser; Maarten Rookmaaker; Marianne Verhaar; Godelieve A M Tytgat; Patrick Kemmeren; Ronald R de Krijger; Reem Al-Saadi; Kathy Pritchard-Jones; Marcel Kool; Anne C Rios; Marry M van den Heuvel-Eibrink; Jan J Molenaar; Ruben van Boxtel; Frank C P Holstege; Hans Clevers; Jarno Drost
Journal:  Nat Commun       Date:  2020-03-11       Impact factor: 14.919

8.  Patient-derived organoids model treatment response of metastatic gastrointestinal cancers.

Authors:  Georgios Vlachogiannis; Somaieh Hedayat; Alexandra Vatsiou; Yann Jamin; Javier Fernández-Mateos; Khurum Khan; Andrea Lampis; Katherine Eason; Ian Huntingford; Rosemary Burke; Mihaela Rata; Dow-Mu Koh; Nina Tunariu; David Collins; Sanna Hulkki-Wilson; Chanthirika Ragulan; Inmaculada Spiteri; Sing Yu Moorcraft; Ian Chau; Sheela Rao; David Watkins; Nicos Fotiadis; Maria Bali; Mahnaz Darvish-Damavandi; Hazel Lote; Zakaria Eltahir; Elizabeth C Smyth; Ruwaida Begum; Paul A Clarke; Jens C Hahne; Mitchell Dowsett; Johann de Bono; Paul Workman; Anguraj Sadanandam; Matteo Fassan; Owen J Sansom; Suzanne Eccles; Naureen Starling; Chiara Braconi; Andrea Sottoriva; Simon P Robinson; David Cunningham; Nicola Valeri
Journal:  Science       Date:  2018-02-23       Impact factor: 47.728

9.  Drug Sensitivity Assays of Human Cancer Organoid Cultures.

Authors:  Hayley E Francies; Andrew Barthorpe; Anne McLaren-Douglas; William J Barendt; Mathew J Garnett
Journal:  Methods Mol Biol       Date:  2019

10.  Patient-derived Organoid Pharmacotyping is a Clinically Tractable Strategy for Precision Medicine in Pancreatic Cancer.

Authors:  Toni T Seppälä; Jacquelyn W Zimmerman; Elisabetta Sereni; Dennis Plenker; Reecha Suri; Noah Rozich; Alex Blair; Dwayne L Thomas; Jonathan Teinor; Ammar Javed; Hardik Patel; John L Cameron; William R Burns; Jin He; David A Tuveson; Elizabeth M Jaffee; James Eshleman; Annamaria Szabolcs; David P Ryan; David T Ting; Christopher L Wolfgang; Richard A Burkhart
Journal:  Ann Surg       Date:  2020-09-01       Impact factor: 13.787

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  1 in total

Review 1.  In vitro models as tools for screening treatment options of head and neck cancer.

Authors:  Barbara Seliger; Ahmed Al-Samadi; Bo Yang; Tuula Salo; Claudia Wickenhauser
Journal:  Front Med (Lausanne)       Date:  2022-09-07
  1 in total

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