Literature DB >> 35258836

Characterization of Programmable Transcription Activators in the Model Monocot Setaria viridis Via Protoplast Transfection.

Adam Sychla1,2,3, Juan Armando Casas-Mollano1,2,3, Matthew H Zinselmeier1,2,3, Michael Smanski4,5,6.   

Abstract

Recent advances in DNA synthesis and assembly allow for genetic constructs to be designed and constructed in high throughput. Characterizing large numbers of variant genetic designs is not feasible with low-throughput and time-consuming plant transformation workflows. Protoplast transformation offers a rapid, high-throughput compatible alternative for testing genetic constructs in plant-relevant molecular environments. Here, we describe a protocol for protoplast transformation using a recent experiment in genetic optimization of dCas9-based programmable transcription activators as an example.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  High throughput; Monocot; Protoplasts; Setaria viridis; Transcription; Transfection; dCas9

Mesh:

Year:  2022        PMID: 35258836     DOI: 10.1007/978-1-0716-2164-6_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.

Authors:  Noriko Okazaki; Reiko Kikuno; Reiko Ohara; Susumu Inamoto; Hidenori Aizawa; Shigeki Yuasa; Daisuke Nakajima; Takahiro Nagase; Osamu Ohara; Hisashi Koga
Journal:  DNA Res       Date:  2003-02-28       Impact factor: 4.458

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Direct gene transfer in potato: a comparison of particle bombardment of leaf explants and PEG-mediated transformation of protoplasts.

Authors:  W Craig; D Gargano; N Scotti; T T Nguyen; N T Lao; T A Kavanagh; P J Dix; T Cardi
Journal:  Plant Cell Rep       Date:  2005-11-16       Impact factor: 4.570

4.  Enzymatic assembly of DNA molecules up to several hundred kilobases.

Authors:  Daniel G Gibson; Lei Young; Ray-Yuan Chuang; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Nat Methods       Date:  2009-04-12       Impact factor: 28.547

Review 5.  Production and metabolic engineering of bioactive substances in plant hairy root culture.

Authors:  Mei-Liang Zhou; Xue-Mei Zhu; Ji-Rong Shao; Yi-Xiong Tang; Yan-Min Wu
Journal:  Appl Microbiol Biotechnol       Date:  2011-04-06       Impact factor: 4.813

6.  Spike-dip transformation of Setaria viridis.

Authors:  Prasenjit Saha; Eduardo Blumwald
Journal:  Plant J       Date:  2016-03-30       Impact factor: 6.417

7.  CRISPR RNA-guided activation of endogenous human genes.

Authors:  Morgan L Maeder; Samantha J Linder; Vincent M Cascio; Yanfang Fu; Quan H Ho; J Keith Joung
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

  7 in total

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