Deficiency of X-linked TENT5D causes male infertility by disrupting the mRNA stability during spermatogenesis.

Dear Editor,

Infertility has become a worldwide health problem affecting ~10% of couples[1]. However, genetic causes of male infertility remain largely elusive and unexplained. In addition, advances in assisted reproduction technologies (ART) to obtain biological children are in increasing demand.

Oligoasthenoteratozoospermia (OAT) is a common type of male infertility with genetic heterogeneity, manifesting low sperm concentrations, reduced motility and various malformations. A group of OAT-affected men fail to father a biological child via conventional ART, such as intracytoplasmic sperm injection (ICSI), probably due to severe defects in spermatogenesis. Modeling human genetic variants in mice has been shown to be efficient in establishing gene–disease relationships for male infertility[2]. In addition, mouse models have superiority for the exploration and optimization of ART approaches. Herein, by taking advantage of the availability of OAT patients and a gene-edited mouse model, we investigated a novel genetic cause of male infertility and tested a “FACS + ROSI” (fluorescence activated cell sorting + round spermatid injection) strategy for a potential compensatory ART approach.

First, whole-exome sequencing (WES) and bioinformatic analyses were performed to analyze our cohort of 186 unrelated Han Chinese men with OAT. A hemizygous stop-gain variant (c.637G > T [p.Glu213*]) of X-linked TENT5D (NCBI GenBank: NM_001170574.2) was identified in the proband (II-1 in Fig. 1a) from nonconsanguineous family HX001. Sanger sequencing showed that the mother (I-2 in Fig. 1a) is a heterozygous carrier. The variant p.Glu213* with glutamicacid that located at a conserved position of TENT5D changed to a stop codon was predicted to be deleterious by MutationTaster and CADD tools (Fig. 1a; Supplementary Table S1). This TENT5D variant is novel and absent in human population genome databases, including the 1000 Genomes Project and gnomAD (Supplementary Table S1). In the OAT patient harboring a hemizygous TENT5D variant, the sperm DNA fragmentation index and high DNA stainability were dramatically increased (Supplementary Table S2). The spermatozoa from the hemizygous TENT5D-mutated patient displayed multiple heads and/or multiple flagella upon hematoxylin and eosin (H&E) staining and scanning electron microscopy (SEM) detection (Fig. 1b; Supplementary Fig. S1 and Table S2). Transmission electron microscopy (TEM) also revealed multiple heads and/or multiple flagellar ultrastructural abnormalities (Fig. 1c). These findings suggest that TENT5D deficiency may cause human male infertility with OAT.

Fig. 1

Deficiency of X-linked TENT5D causes male infertility by disrupting mRNA stability during spermatogenesis.

a Pedigree of family HX001 affected by a stop-gain TENT5D variant. The black-filled square indicates the male case with oligoasthenoteratozoospermia. Sanger sequencing confirmed the hemizygous TENT5D variant in proband HX001 II-1. Schematic representation of TENT5D and phylogenetic conservation of the variant location. b, c SEM (b) and TEM (c) analyses of the spermatozoa from a male control individual and the TENT5D-associated proband. Scale bars, 5 μm. d Expression of Tent5d was investigated by reverse-transcription PCR in various tissues from adult male mice. Gapdh was used as an internal control. e, f The sperm count (e) and percentages of motile sperm (f) in WT (Tent5d+/Y) and Tent5d-mutated (Tent5d−/Y) male mice (**P < 0.01, ***P < 0.001). Error bars represent the standard error of the mean. Two-tailed Student’s paired or unpaired t-tests were used as appropriate. g H&E staining performed on testis sections of Tent5d+/Y and Tent5d−/Y male mice. Scale bars, 20 μm. h PAS staining and immunostaining assays were performed on adult mouse testis sections. Scale bars, 20 μm. i Volcano plots of the transcriptome analysis showing the expression changes of mRNAs in spermatocytes and round spermatids of MU and WT male mice. j PCR-based poly(A) test of Clu, Cst9, Cst12, Defb19 and Gkap1 mRNAs in the testes of MU and WT male mice. The downregulated genes were marked in pink. k Schematic model showing that TENT5D stabilizes mRNAs by extending the length of poly(A) tails in spermatocytes and round spermatids. l Representative development of mouse embryos. The offspring was obtained by “FACS + ROSI” using round spermatids from Tent5d+/Y and Tent5d−/Y male mice.

Considering that TENT5D is highly conserved between humans and mice (83.8% similarity in consensus positions), we used a mouse model to investigate whether TENT5D deficiency plays a causative role in male infertility. Murine ortholog X-linked Tent5d is preferentially expressed in the testis and epididymis (Fig. 1d). Furthermore, Tent5d was highly expressed at 3 to 4 weeks, the time point matching the first wave of spermatocytes producing spermatids in wild-type (WT, Tent5d+/Y) testes (Supplementary Fig. S2).

To further investigate the physiological role of Tent5d during spermatogenesis, we generated Tent5d-mutated mice using CRISPR/Cas9 technology and tentatively ruled out potential off-target effects of the gRNA on a set of genomic regions that we predicted based on sequence similarity (Supplementary Table S3). Finally, we obtained Tent5d-mutated (MU, Tent5d−/Y) male mice by introducing a frameshift deletion (c.622_625del), which was predicted to cause premature translational termination (Supplementary Fig. S3). Furthermore, the expressions of Tent5d and TENT5D were almost absent in the testes of Tent5d-mutated male mice (Supplementary Fig. S4). We also found that Tent5d-mutated male mice were completely sterile (Supplementary Fig. S5a).

Eight-week-old Tent5d-mutated male mice exhibited dramatically smaller testes as compared with WT controls (Supplementary Fig. S5b). Sperm concentration and motility were significantly reduced in Tent5d-mutated male mice (Fig. 1e, f). The testicular lumen of 8-week-old WT male mice was composed of spermatogenic cells at various stages. In contrast, the testicular lumens of age-matched Tent5d-mutated male mice were full of round spermatids but lacked elongating spermatids and later forms (Fig. 1g). These “round spermatid-like” and few elongated sperms were also found in both caput and cauda epididymides of Tent5d-mutated male mice (Supplementary Fig. S6a).

To further investigate the role of TENT5D during spermatogenesis, we performed periodic acid-Schiff (PAS) staining and immunostaining assays using peanut agglutinin fluorescent dye. Proacrosomal granules began to form until late-round spermatid cells appeared abnormal (Fig. 1h; Supplementary Fig. S6b). TEM analysis also indicated that spermatids did not develop normally to the acrosome phase in Tent5d-mutated adult male mice (Supplementary Fig. S6c). We also observed that multinucleated giant cells (symplasts) contained multiple spermatids within a single plasma membrane in the testicular lumen of Tent5d-mutated adult male mice (Supplementary Fig. S7). There were few symplasts in the testes of the 4-week-old Tent5d-mutated male mice (Supplementary Fig. S8a). However, the symplasts were obviously increased in the 8-week-old Tent5d-mutated male mice (Supplementary Fig. S8b), indicating that the symplasts appeared in late spermatogenesis.

In germ cells, intercellular bridges, which are produced during mitosis and meiosis to connect the daughter cells, are thought to be important for intracellular communication[3,4]. F-actin (a marker of cell junctions) and TEX14 (a marker of intercellular bridges) exhibited abnormal localization in the testicular lumen of Tent5d-mutated male mice (Supplementary Fig. S9a, b). Moreover, the TUNEL assay showed a high level of apoptosis in the testicular lumen of 8-week-old Tent5d-mutated male mice, while no apoptosis signals were observed in the 4-week-old group (Supplementary Fig. S9c). Collectively, these observations indicate that the appearance of spermatogenic abnormalities at step 8 (late-round spermatids) of spermiogenesis in Tent5d-mutated male mice might be due to abnormal connections between cells.

TENT5D belongs to the TENT5 subfamily and is expected to have noncanonical poly(A) polymerase activities and roles in mRNA stability[5]. To test this hypothesis, we first examined the catalytic properties and nucleotide selection of TENT5D. In vitro tailing assays showed that TENT5D extended 5′ [32P]-labeled A15 only in the presence of ATP and the mixture but not UTP, CTP or GTP (Supplementary Fig. S10), indicating that TENT5D is an active noncanonical poly(A) polymerase. Next, we explored the role of TENT5D on mRNA stability during mouse spermatogenesis. Considering the fact that there is active transcription in spermatocytes (SC) and round spermatids (RS)[6], we isolated SC and RS from the testes of Tent5d-mutated and WT mice (Supplementary Fig. S11a, b) and performed transcriptome analyses using RNA sequencing. The qualities of isolated germ cells and sequencing were characterized by hierarchical clustering (Supplementary Fig. S11c). This analysis identified obviously more downregulated genes than upregulated genes in Tent5d-mutated germ cells (|FC| > 2, P.adjust < 0.05; Fig. 1i; Supplementary Fig. S11d, Tables S4 and S5). For example, Clu, Cst9, Cst12 and Defb19 were downregulated in both Tent5d-mutated SC and RS, with Gkap1 as a negative control (Supplementary Fig. S12a, b). These data indicate that TENT5D tends to stabilize mRNAs during spermatogenesis. Gene Ontology (GO) analysis of the downregulated genes revealed multiple distinct gene clusters (Supplementary Fig. S12c). Importantly, in line with defective spermatogenesis and male infertility in Tent5d-mutated male mice, the affected genes were enriched under the GO terms of reproduction in multicellular organisms, germ cell development, spermatid differentiation, single fertilization and fertilization, implying that TENT5D regulates multiple cellular programs in male germ cells. Notably, cell adhesion-related factors Adam26a and Cldn34c4 were downregulated in SC and RS, respectively, indicating that Tent5d deficiency might also affect cell adhesion during mouse spermatogenesis (Supplementary Fig. S13a). Taken together, these data support that TENT5D is a noncanonical poly(A) polymerase important for the stability of mRNAs during spermatogenesis.

Poly(A) tail length is a key determinant of mRNA turnover, and mRNAs with shortened poly(A) tails are easily degraded[7]. Using real-time quantitative PCR assays, we confirmed the downregulation of Adam26a, Cldn34c4, Clu, Cst9, Cst12 and Defb19 in mouse testes, with Gkap1 as the negative control (Supplementary Figs. S12a and S13b). By performing the poly(A) test assay, we found that each downregulated gene had shorter poly(A) tails in the testes of Tent5d-mutated male mice than in those of WT controls, while there were no significant changes for the Gkap1 control group (Fig. 1j; Supplementary Fig. S13c). Collectively, these results reveal that Tent5d deficiency could shorten some mRNA poly(A) tails and further result in mRNA instability, thereby affecting the process of spermatogenesis (Fig. 1k). It has been reported that the length of poly(A) tails can also influence mRNA translational efficiency in maturing oocytes and early embryos[8], and we cannot exclude the possibility that poly(A) tail shortening in Tent5d-mutated male germ cells might affect translational efficiency and subsequently contribute to germ cell defects.

ICSI using ejaculated sperm is an effective treatment for severe OAT[9]. Here, the OAT case HX001 II-1, harboring a hemizygous TENT5D stop-gain variant, also received ICSI treatment in clinic. Unfortunately, the HX001 couples revealed a poor ICSI outcome (Supplementary Table S6). Similarly, ICSI for Tent5d-mutated male mice was also inefficient, limiting its potential application in overcoming TENT5D-associated male infertility (Supplementary Fig. S14).

To develop an efficient method for rescuing TENT5D-associated sterility, we tested the “FACS + ROSI” strategy in the Tent5d-mutated mouse model. To guarantee precise isolation of haploid spermatids from testicular mixtures, we employed FACS to enrich round spermatids and then injected them into oocytes obtained from WT female mice (Supplementary Fig. S15a). Two-cell embryos were successfully obtained. After embryo transfer, we obtained six live offspring at half of the efficiency of the controls (Fig. 1l). Also, the genotypes of offspring fit the expected patterns (Supplementary Fig. S15b). Therefore, “FACS + ROSI” provides a possible approach to enable patients with TENT5D-associated OAT to have their own genetic offspring.

In summary, our genetic and functional data based on human and mouse experimental evidence strongly suggest that hemizygous stop-gain mutations of TENT5D/Tent5d as a novel genetic cause of primary male infertility with OAT and provide insights into the molecular mechanism by which TENT5D function in the process of spermatogenesis. Although TENT5D deficiency may account for a small fraction of the OAT cases, our findings are consistent with the high genetic heterogeneity of male infertility. Furthermore, the success of the “FACS + ROSI” approach in Tent5d-mutated male mice indicates an effective treatment for human male infertility caused by TENT5D mutations. This study will provide new information for genetic counseling and clinical guidance of male infertility with OAT.

Supplementary table S5