Literature DB >> 35254498

Bioprospecting of microbial enzymes: current trends in industry and healthcare.

Eswar Rao Tatta1, Madangchanok Imchen1, Jamseel Moopantakath1, Ranjith Kumavath2.   

Abstract

Microbial enzymes have an indispensable role in producing foods, pharmaceuticals, and other commercial goods. Many novel enzymes have been reported from all domains of life, such as plants, microbes, and animals. Nonetheless, industrially desirable enzymes of microbial origin are limited. This review article discusses the classifications, applications, sources, and challenges of most demanded industrial enzymes such as pectinases, cellulase, lipase, and protease. In addition, the production of novel enzymes through protein engineering technologies such as directed evolution, rational, and de novo design, for the improvement of existing industrial enzymes is also explored. We have also explored the role of metagenomics, nanotechnology, OMICs, and machine learning approaches in the bioprospecting of novel enzymes. Overall, this review covers the basics of biocatalysts in industrial and healthcare applications and provides an overview of existing microbial enzyme optimization tools. KEY POINTS: • Microbial bioactive molecules are vital for therapeutic and industrial applications. • High-throughput OMIC is the most proficient approach for novel enzyme discovery. • Comprehensive databases and efficient machine learning models are the need of the hour to fast forward de novo enzyme design and discovery.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Bio-prospection; Enzyme design; Industrial biotechnology; Industrial enzymes; Microbial enzymes

Mesh:

Substances:

Year:  2022        PMID: 35254498     DOI: 10.1007/s00253-022-11859-5

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  93 in total

Review 1.  Improved biocatalysts by directed evolution and rational protein design.

Authors:  U T Bornscheuer; M Pohl
Journal:  Curr Opin Chem Biol       Date:  2001-04       Impact factor: 8.822

Review 2.  Directed evolution of biocatalysts.

Authors:  F H Arnold; A A Volkov
Journal:  Curr Opin Chem Biol       Date:  1999-02       Impact factor: 8.822

Review 3.  De novo design of biocatalysts.

Authors:  Daniel N Bolon; Christopher A Voigt; Stephen L Mayo
Journal:  Curr Opin Chem Biol       Date:  2002-04       Impact factor: 8.822

4.  Profile of biochemical traits influencing tenderness of muscles from the beef round.

Authors:  M J Anderson; S M Lonergan; C A Fedler; K J Prusa; J M Binning; E Huff-Lonergan
Journal:  Meat Sci       Date:  2012-02-03       Impact factor: 5.209

Review 5.  What has de novo protein design taught us about protein folding and biophysics?

Authors:  David Baker
Journal:  Protein Sci       Date:  2019-04       Impact factor: 6.725

6.  Purification and characterization of an extracellular keratinolytic protease from a new isolate of Aspergillus parasiticus.

Authors:  T S Anitha; P Palanivelu
Journal:  Protein Expr Purif       Date:  2013-01-19       Impact factor: 1.650

7.  Installing hydrolytic activity into a completely de novo protein framework.

Authors:  Antony J Burton; Andrew R Thomson; William M Dawson; R Leo Brady; Derek N Woolfson
Journal:  Nat Chem       Date:  2016-07-04       Impact factor: 24.427

Review 8.  Computational methods for de novo protein design and its applications to the human immunodeficiency virus 1, purine nucleoside phosphorylase, ubiquitin specific protease 7, and histone demethylases.

Authors:  M L Bellows; C A Floudas
Journal:  Curr Drug Targets       Date:  2010-03       Impact factor: 3.465

Review 9.  Cellulase and xylanase synergism in industrial biotechnology.

Authors:  Priyanka Bajaj; Ritu Mahajan
Journal:  Appl Microbiol Biotechnol       Date:  2019-10-18       Impact factor: 4.813

10.  Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Authors:  Brian M Bonk; James W Weis; Bruce Tidor
Journal:  J Am Chem Soc       Date:  2019-02-21       Impact factor: 15.419

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