| Literature DB >> 35253369 |
Eline A Verberne1, Jonne M Westermann2, Tamar I de Vries3, Ginette M Ecury-Goossen4, Shirley M Lo-A-Njoe4, Meindert E Manshande4, Sonja Faries4, Hans D Veenhuis4, Patricia Philippi4, Farah A Falix4, Irsa Rosina-Angelista4, Maria Ponson-Wever5, Louise Rafael-Croes5, Patricia Thorsen5, Eric Arends5, Maartje de Vroomen6,7, Sietse Q Nagelkerke6,7, Martijn Tilanus8, Lars T van der Veken9, Karin Huijsdens-van Amsterdam9, Anne-Marie van der Kevie-Kersemaekers1, Mariëlle Alders1, Marcel M A M Mannens1, Mieke M van Haelst1.
Abstract
Worldwide, there are large inequalities in genetic service delivery. In 2011, we established a bi-annual joint pediatric-genetics clinic with a visiting clinical geneticist in the Dutch Caribbean. This retrospective study evaluates the yield of diagnostic testing and the clinical utility of a diagnosis for patients with rare diseases on these relatively isolated, resource-limited islands. A total of 331 patients that were referred to the clinical geneticist between November 2011 and November 2019 and had genetic testing were included in this study. A total of 508 genetic tests were performed on these patients. Microarray, next-generation sequencing gene panels, and single-gene analyses were the most frequently performed genetic tests. A molecularly confirmed diagnosis was established in 33% of patients (n = 108). Most diagnosed patients had single nucleotide variants or small insertions and/or deletions (48%) or copy number variants (34%). Molecular diagnostic yield was highest in patients referred for seizures and developmental delay/intellectual disability. The genetic diagnosis had an impact on clinical management in 52% of patients. Referrals to other health professionals and changes in therapy were the most frequently reported clinical consequences. In conclusion, despite limited financial resources, our genetics service resulted in a reasonably high molecular diagnostic yield. Even in this resource-limited setting, a genetic diagnosis had an impact on clinical management for the majority of patients. Our approach with a visiting clinical geneticist may be an example for others who are developing genetic services in similar settings.Entities:
Keywords: caribbean; clinical genetics; clinical utility; diagnostic yield; rare diseases
Mesh:
Year: 2022 PMID: 35253369 PMCID: PMC9314971 DOI: 10.1002/ajmg.a.62708
Source DB: PubMed Journal: Am J Med Genet A ISSN: 1552-4825 Impact factor: 2.578
General characteristics of the Kingdom of the Netherlands
| Constituent countries | Special municipalities of the Netherlands | ||||||
|---|---|---|---|---|---|---|---|
| The Netherlands | Aruba | Curaçao | St. Maarten | Bonaire | St. Eustatius | Saba | |
| Population | 17,475,415 | 112,190 | 153,671 | 42,577 | 21,745 | 3,142 | 1,918 |
| Area | 41,543 km2 | 180 km2 | 444 km2 | 34 km2 | 288 km2 | 21 km2 | 13 km2 |
| GNI per capita (US$) | 51,060 (2020) | 27,120 (2017) | 17,140 (2020) | 27,680 (2018) | — | — | — |
| Number of clinical genetics visits (2011–2019) | — | 15 | 16 | 3 | 14 | — | — |
On January 1st, 2021. Statistics Netherlands, Population; key figures. https://opendata.cbs.nl/statline/#/CBS/en/dataset/37296eng/table?ts=1640263768026. Accessed 23 December 2021.
On January 1st, 2020. Central Bureau of Statistics Aruba, Quarterly Demographic Bulletin 2020. https://cbs.aw/wp/index.php/2020/12/17/quarterly‐demographic‐bulletin‐2019‐2/. Accessed 23 December 2021.
On January 1st, 2021. Central Bureau of Statistics Curaçao, Population Tables. https://www.cbs.cw/population‐tables. Accessed 23 December 2021.
On January 1st, 2021. Department of Statistics Sint Maarten, Population Estimates and Vital Statistics 2021. http://stats.sintmaartengov.org/. Accessed 23 December 2021.
On January 1st, 2021. Statistics Netherlands, Caribbean Netherlands; population, sex, age and country of birth. https://opendata.cbs.nl/statline/#/CBS/en/dataset/84712ENG/table?ts=1606311418329. Accessed 23 December 2021.
Government of the Netherlands, What are the different parts of the Kingdom of the Netherlands? https://www.government.nl/topics/caribbean‐parts‐of‐the‐kingdom/question‐and‐answer/what‐are‐the‐different‐parts‐of‐the‐kingdom‐of‐the‐netherlands. Accessed 23 December 2021.
The World Bank, GNI per capita, Atlas method (current US$). https://data.worldbank.org/indicator/ny.gnp.pcap.cd?year_high_desc=truel. Accessed 23 December 2021.
Molecular diagnoses: single nucleotide variants and small insertions and/or deletions
| No. | Sex | Phenotype | Variant | Zygosity; inheritance | Transcript | Cl | Associated condition, inheritance pattern [MIM number] |
|---|---|---|---|---|---|---|---|
|
| |||||||
| 1 | M | ID, hyperthyroidism |
| het; unk | NM_001252634.1 | LP | Thyroid hormone resistance, AD [188570] |
| 50 | F | ID, microcephaly, epilepsy, strabismus, facial dysmorphism |
| het; unk | NM_001396.4 | P | Autosomal dominant mental retardation 7, AD [614104] |
| 51 | F | Short stature, ASD, pulmonary stenosis, webbed neck, facial dysmorphism |
| het; unk | NM_005633.3 | LP | Noonan syndrome 4, AD [610733] |
| 65 | M | ID, microcephaly, short stature, facial dysmorphism |
| het; unk | NM_030632.3 | P | Bainbridge‐Ropers syndrome, AD [615485] |
| 74 | F | ID, DD, microcephaly, agenesis of the corpus callosum |
| het; unk | NM_003108.3 | LP | Coffin‐Siris syndrome 9, AD [615866] |
| 127 | F | Cleft palate, cataract |
| het; unk | NM_017745.5 | P | Oculofaciocardiodental syndrome, XLD [300166] |
| 131 | F | ID, DD, short stature, ataxia, nystagmus, hypodontia |
| hmz; mat/pat | NM_018082.5 | P | Hypomyelinating leukodystrophy 8, AR [614381] |
| 133 | M | ID, facial dysmorphism |
| het; dn | NM_003470.2 | LP | Hao‐Fountain syndrome, AD [616863] |
| 164 | M | ID, facial dysmorphism, sialorrhea |
| hem; dn | NM_000489.4 | LP | X‐linked mental retardation‐hypotonic facies syndrome, XLR [309580] |
| 166 | M | ID, speech and language delay, cryptorchidism, hirsutism, facial dysmorphism |
| het; dn | NM_020732.3 | P | Coffin‐Siris syndrome 1, AD [135900] |
| 176 | M | Short stature, pseudomuscular build |
| het; unk | NM_000138.5 | P | Acromicric dysplasia, AD [102370] |
| 243 | F | Obesity |
| het; unk | NM_005912.2 | P | Obesity, AD [618406] |
| 251 | M | Bone fractures, blue sclerae |
| het; unk | NM_000088.3 | P | Osteogenesis imperfecta type I, AD [166200] |
| 303 | F | Neonatal seizures |
| het; unk | NM_172107.2 | P | Benign familial neonatal seizures 1, AD [121200] |
| 307 | M | PDA, PFO, hypospadias, cryptorchidism, short stature, facial dysmorphism, hemangioma |
| het; unk | NM_004333.4 | LP | Cardiofaciocutaneous syndrome, AD [115150] |
| 349 | F | Myasthenic syndrome |
| het; pathet; mat | NM_020549.5 | VUS; LP | Presynaptic congenital myasthenic syndrome 6, AR [254210] |
| 395 | M | ID, short stature, facial dysmorphism |
| het; dn | NM_001197104.1 | P | Wiedemann‐Steiner syndrome, AD [605130] |
| 436 | M | ID, DD, hypotonia, vision problems, unilateral hearing loss |
| het; dn | NM_002074.4 | LP | Autosomal dominant mental retardation 42, AD [616973] |
| 458 | M | Short stature, scoliosis, carpal synostosis |
| hmz, unk | NM_001457.3 | P | Spondylocarpotarsal synostosis syndrome, AR [272460] |
| 464 | F | ID, neonatal diabetes, annular pancreas, duodenal malrotation |
| het; unk | NM_001287174.1 | LP | Permanent neonatal diabetes mellitus 3, AD [618857] |
| 466 | F | Excess skin folds neck, pulmonary artery stenosis, low‐set ears |
| het; unk | NM_006767.4 | LP | Noonan syndrome 10, AD [616564] |
| 507 | F | Hemihypertrophy |
| somatic mosaicism | NM_006218.2 | P | Low‐level PIK3CA mosaicism associated with hemihypertrophy |
| 511 | F | Long QT syndrome |
| het; pat | NM_000238.3 | P | Long QT syndrome 2, AD [613688] |
| 525 | M | ASD, cryptorchidism, short stature, facial dysmorphism |
| het; unk | NM_002834.4 | P | Noonan syndrome 1, AD [163950] |
| 567 | F | Seizures |
| het; unk | NM_001165963.1 | P | Generalized epilepsy with febrile seizures plus (GEFS+) type 2, AD [604403] |
| 568 | M | Seizures |
| het; unk | NM_006545.4 | P | Familial focal epilepsy with variable foci 2, AD [617116] |
| 574 | M | Seizures, cortical tubers on brain MRI |
| het; unk | NM_000368.4 | P | Tuberous sclerosis 1, AD [191100] |
| 621 | F | Focal segmental glomerulosclerosis |
| het; unkhet; unk | NM_014625.3 | P; P | Nephrotic syndrome type 2, AR [600995] |
|
| |||||||
| 15 | M | Multiple café au lait spots |
| het; unk | NM_000267.1 | P | Neurofibromatosis type 1, AD [162200] |
| 40 | M | ID, tall stature, macrocephaly, PDA, facial dysmorphism |
| het; unk | NM_022455.3 | P | Sotos syndrome, AD [117550] |
| 46 | M | Hypotonia, loss of motor skills, areflexia |
| hmz; unk | NM_000344.3 | P | Spinal muscular atrophy type I, AR [253300] |
| 66 | F | Short stature, short arms and legs, macrocephaly |
| het; unk | NM_000142.4 | P | Hypochondroplasia, AD [146000] |
| 69 | F | Insensitivity to pain |
| het; mathet; pat | NM_002977.3 | P; P | Congenital insensitivity to pain, AR [243000] |
| 80 | F | Developmental regression, growth retardation |
| het; unk | NM_004992.3 | P | Rett syndrome, XLR [312750] |
| 106 | M | ID, microcephaly, hypospadias, feeding difficulties, facial dysmorphism |
| het; unk | NM_133433.3 | P | Cornelia de Lange syndrome 1, AD [122470] |
| 114 | F | DD, macrocephaly, facial dysmorphism |
| het; unk | NM_000314.4 | P | Cowden syndrome, AD [158350] |
| 150 | F | Hypertension, brachydactyly |
| het; mat | NM_000921.4 | P | Hypertension and brachydactyly syndrome, AD [112410] |
| 162 | M | Macrocephaly, facial dysmorphism, deep plantar creases |
| het; unk | NM_000141.4 | P | Crouzon syndrome, AD [123500] |
| 178 | F | Seizures, cortical tubers on brain MRI |
| het; unk | NM_000548.3 | P | Tuberous sclerosis 2, AD [613254] |
| 244 | M | DD, behavioral problems, facial dysmorphism |
| het; dn | NM_022455.3 | P | Sotos syndrome, AD [117550] |
| 263 | M | Lung hypoplasia, enlarged kidneys |
| het; mathet; pat | NM_138694.3 | P; LP | Polycystic kidney disease 4, AR [263200] |
| 294 | F | Short stature, short limbs, macrocephaly |
| het; unk | NM_000142.4 | P | Achondroplasia, AD [100800] |
| 302 | F | Seizures, cortical and subcortical tubers on brain MRI, hypopigmented macules |
| het; unk | NM_000548.3 | P | Tuberous sclerosis 2, AD [613254] |
| 304 | M | Camptodactyly of the fingers, bowed lower limbs, club feet, facial dysmorphism |
| het; unkhet; unk | NM_002310.6 | P; P | Stuve‐Wiedemann syndrome, AR [601559] |
| 338 | F | Tall stature, increased arm span‐to‐height ratio, myopia |
| het; unk | NM_000138.3 | P | Marfan syndrome, AD [154700] |
| 411 | M | Capillary malformations |
| het; unk | NM_002890.2 | P | Capillary malformation‐arteriovenous malformation 1, AD [608354] |
| 439 | F | Tall stature, increased arm span‐to‐height ratio |
| het; unk | NM_000138.3 | P | Marfan syndrome, AD [154700] |
| 488 | F | DD, multiple café au lait spots |
| het; unk | NM_000267.3 | P | Neurofibromatosis type 1, AD [162200] |
|
| |||||||
| 16 | F | ID, short stature, GH deficiency, congenital hypothyroidism, congenital cataract |
| het; mathet; pat | NM_017619.3 | P; LP | Pituitary hormone deficiency, combined or isolated, 7 [618160] |
Note: Only patients for whom informed consent was obtained are included in this table.
Abbreviations: AD, autosomal dominant; AR, autosomal recessive; ASD, atrial septal defect; Cl., classification; dn, de novo; ES, exome sequencing; F, female; GH, growth hormone; hem, hemizygous; het, heterozygous; hmz, homozygous; ID, intellectual disability; LP, likely pathogenic; M, male; mat, maternal; NGS, next‐generation sequencing; P, pathogenic; pat, paternal; PDA, patent ductus arteriosus; PFO, patent foramen ovale; unk, unknown; VUS, variant of unknown significance.
Previously published (Verberne, Dalen Meurs, et al., 2020; Verberne, Faries, et al., 2020; Verberne, Manshande, et al., 2020).
Previously published (Fountain et al., 2019). Affected twin with the same molecular diagnosis not included in this cohort.
Novel variant, but genetic details regarding this individuals have been previously published.
Variant classification different from original report. USP7 c.3202 + 1G > T had been reported as VUS but reclassified as likely pathogenic after more patients with variants in this gene were identified and the phenotype had been described (criteria according to Richards et al., 2015: PVS1, PS2, PM2).
Previously published (Stunnenberg et al., 2021).
Previously published (Renkema et al., 2018).
Genetic testing was performed in both parents based on the results of the autopsy (clinical diagnosis of autosomal recessive polycystic kidney disease).
Previously published (Van De Maele et al., 2019).
Previously published (Verberne, Dalen Meurs, et al., 2020; Verberne, Faries, et al., 2020; Verberne, Manshande, et al., 2020). Affected siblings with the same molecular diagnosis not included in this cohort.
Variant classification different from original report. The RNPC3 c.443G > C p.(Gly148Ala) variant was reclassified from VUS to likely pathogenic after segregation analysis in siblings (criteria according to Richards et al., 2015: PM2, PM3, PP1, PP3).
Molecular diagnoses: Copy number variants
| No. | Sex | Phenotype | Variant(s) | Class | Associated condition |
|---|---|---|---|---|---|
| 35 | M | ID, speech and language delay, | arr[GRCh37] 15q11.2(22750305_23272733)x1 | P (sl) | 15q11.2 deletion syndrome |
| 45 | F | DD, hypotonia, clubfoot, facial dysmorphism | arr[GRCh37] 19p13.3(275925_2286201)x3 dn | P | 19p13.3 duplication (~2 Mb) |
| 83 | M | ID, seizures, microcephaly, clinodactyly | arr[GRCh37] 15q11.2q13.2(22299434_30657952)x3,15q13.2q13.3(30936285_32514341)x3 | P; P (sl) | 15q11.2q13.2 duplication/triplication (~8.4 Mb; overlapping PWS/AS deletion syndrome region) and 15q13.2q13.3 duplication (~1.6 Mb; including |
| 84 | M | ID, hirsutism, ptosis, downslanted palpebral fissures, high forehead, uplifted earlobe | arr[GRCh37] 19q13.42q13.43(55447595_59097160)x3,22q11.1q11.21(16197021_20733495)x3 | P; P | 19q13.42q13.43 terminal duplication (~3.6 Mb) and 22q11.1q11.21 duplication (~4.5 Mb; overlapping with cat eye syndrome region and part of DiGeorge syndrome critical region) |
| 104 | F | Short stature, failure to thrive, Dandy‐Walker variant, patent foramen ovale | arr[GRCh37] 17q12(34815551_36450598)x3 dn | P | 17q12 duplication syndrome |
| 122 | F | ID, facial dysmorphism | arr[GRCh37] 6p22.3(15374392_15405436)x1 dn | LP | 6p22.3 deletion (~31 kb; including exon 2 of |
| 128 | M | DD, cryptorchidism, hypotonia, obesity, partial empty sella | arr[GRCh37] 15q11.2q13.1(23656946_28535266)x1 dnMS‐MLPA: deletion of paternal 15q11q13 allele | P | Prader‐Willi syndrome |
| 129 | M | Agenesis of the corpus callosum, hypotonia, facial dysmorphism | arr[GRCh37] 8p23.3p23.1(164984_7007415)x1,8p23.1p11.1(12494265_43674370)x3,8q23.3q24.3(115320834_146293414)x3 dn | P | Suggestive of 8p inverted duplication/deletion syndrome |
| 132 | M | DD, microcephaly, lissencephaly, agenesis of the corpus callosum, short stature, facial dysmorphism | arr[GRCh37] 10q23.31q24.1(91959144_99204791)x1 dn | P | 10q23.31q24.1 deletion (~7.2 Mb; including |
| 154 | M | Supravalvular aortic stenosis, supravalvular and peripheral pulmonary stenosis | arr[GRCh37] 7q11.23(72994476_74000679)x1 | P | 7q11.23 deletion (~1.0 Mb; including |
| 163 | F | ID, hypotonia, severe scoliosis, facial dysmorphism | arr[GRCh37] 10p14p12.33(8926204_18332112)x1 | P | 10p14p12.33 deletion (~9.4 Mb) |
| 169 | M | DD, hypotonia, facial dysmorphism | arr[GRCh37] 14q32.32q32.33(103306215_106199579)x1 dn | P | 14q32.32q32.33 deletion (~2.9 Mb) |
| 174 | M | ID, facial dysmorphism | arr[GRCh37] 3q24q26.1(144955389_161517861)x1 | P | 3q24q26.1 deletion (~16.5 Mb) |
| 249 | F | Lissencephaly, facial dysmorphism | arr[GRCh37] 17p13.3(2540998_2563261)x1 | P | 17p13.3 deletion (~22 kb; including exon 2 of |
| 252 | M | DD, macrocephaly, facial dysmorphism | arr[GRCh37] 16p12.2(21839340_22409463)x1 | P | 16p12.2 deletion syndrome |
| 271 | M | DD, microcephaly, cryptorchism, synophrys, hirsutism | arr[GRCh37] 6q25.3q26(156833278_161216608)x1 | P | 6q25.3q26 deletion (~4.4 Mb; including |
| 300 | F | Speech and language delay, short stature, obesity, facial dysmorphism | arr[GRCh37] 9q31.1q31.3(105904199_114366248)x1 | P | 9q31 deletion syndrome |
| 310 | M | DD, VSD, facial dysmorphism | arr[GRCh37] 1q21.1q21.2(146089268_149376652)x1 dn | P | 1q21.1 deletion syndrome |
| 340 | M | DD, microcephaly, failure to thrive, facial dysmorphism | arr[GRCh37] 7q21.13q21.3(89613897‐94411523)x1 dn | P | 7q21.13q21.3 deletion (~4.8 Mb) |
| 352 | F | Facial dysmorphism | arr[GRCh37] 9p24.3p22.3(203861_16031471)x1 | P | 9p24.3p22.3 deletion (~16 Mb) |
| 375 | F | Mayer‐Rokitansky‐Küster‐Hauser syndrome, obesity | arr[GRCh37] 16p11.2(28825605_29043450)x1 | P | 16p11.2 microdeletion syndrome |
| 380 | F | Short stature, obesity, irregular menstruation | arr[GRCh37] 15q11.2(25068609_25084319)x1 | P | 15q11.2 deletion (~15.7 kb; including exon 1–3 of |
| 433 | M | DD, hypotonia, peripheral pulmonary stenosis, microcephaly, facial dysmorphism | arr[GRCh37] 7q11.23(72718277_74142190)x1,16p13.11(15058820_16330672)x3 | P; P (sl) | Williams syndrome; 16p13.11 deletion syndrome |
| 494 | F | Club feet, agenesis of the corpus callosum, hydronephrosis, hypotonia, pulmonary hypertension, facial dysmorphism | arr[GRCh37] 3q11.1q21.3(93878600_126099226)x1 | P | 3q11.1q21.3 deletion (~32 Mb) |
| 510 | F | Scimitar syndrome, facial dysmorphism | arr[GRCh37] 6q27(166502703_170919470)x1 | P | 6q27 deletion (~4.4 Mb) |
| 518 | F | PKD, subcortical tubers, hypertrophic cardiomyopathy, hypopigmentation | arr[GRCh37] 16p13.3(2106894_2131457)x1 dn | P | 16p13.3 deletion (~25 kb; including several exons of |
| 538 | M | Cleft lip and palate, mild ID, tubular nose, low‐set ears, long fingers | 46,XY,del(21)(q22.3).arr[GRCh37] 21q22.3(43229099_46312018)x1,21q22.3(46337565_48100155)x1 dn | P; P | 21q22.3 deletion (~3.1 Mb) and 21q22.3 terminal deletion (~1.8 Mb) |
| 539 | M | DD, facial dysmorphism | 46,XY.nuc ish 22q13.2(RP11‐101F24x3).arr[GRCh37] 22q13.1q13.2(39606071_43462451)x3 dn | P | 22q13.1q13.2 duplication (~3.9 Mb) |
| 570 | F | DD, seizures, autism | arr[GRCh37] 15q11.2(22669052‐23217514)x3 | P (sl) | 15q11.2 duplication syndrome |
| 571 | M | Seizures, microcephaly | arr[GRCh37] 20q13.33(61987414_62147896)x1 | P | 20q13.33 deletion (~160 kb; including |
| 616 | M | Cleft lip and palate, hearing loss, tubular nose, long fingers | arr[GRCh37] 22q11.21q11.22(21808750_22955072)x1 dn | P | Distal 22q11.2 deletion syndrome |
Note: Only patients for whom informed consent was obtained are included in this table.
Abbreviations: Class, classification; DD, developmental delay; dn, de novo; ID, intellectual disability; LP, likely pathogenic; MS‐MLPA, methylation‐specific multiplex ligation‐dependent probe amplification; P, pathogenic; PKD, polycystic kidney disease; sl, susceptibility locus; VSD, ventricular septal defect.
Previously published (Verberne et al., 2021).
Molecular diagnoses: Other variant types
| No. | Sex | Phenotype | Variant | Associated condition |
|---|---|---|---|---|
|
| ||||
| 109 | F | Severe midline defect | 47,XX,+13.arr(13)x3 | Patau syndrome |
| 165 | F | ID, facial dysmorphism | arr(21)x3 | Down syndrome |
| 218 | F | ID, hypotonia, facial dysmorphism | arr(21)x3 | Down syndrome |
| 278 | F | DD, scoliosis, facial dysmorphism | arr(13)x3[0.15] | Mosaic trisomy 13 |
| 401 | M | Speech and language delay, tall stature | arr(X)x1,(Y)x2 | XYY syndrome |
| 544 | M | PDA, facial dysmorphism | arr(X)x2,(Y)x1 | Klinefelter syndrome |
| 550 | F | PDA, facial dysmorphism, sandal gap | 47,XX,+21.arr(21)x3 | Down syndrome |
| 610 | F | Hypotonia, facial dysmorphism, sandal gap | arr(21)x3 | Down syndrome |
|
| ||||
| 7 | F | Hypotonia, short stature, hypopigmentation, sparse hair, frontal bossing, thick eyebrows, widely spaced eyes | nuc ish(ETV6x4,RUNX1x2)[24/100] | Pallister‐Killian syndrome |
| 115 | F | DD, hypotonia, microcephaly, facial dysmorphism | mos 47,XX,+der(1)(::q10‐ > q23.3::)[4]/46,XX[12].arr[GRCh37] 1q21.1q23.3(144854574_162843606)x2 ~3 | Mosaic trisomy 1q10q23.3 |
| 161 | F | Agenesis of the corpus callosum, HLHS, truncus arteriosus, TAPVD, hirsutism | 46,XX,inv(12)(p?11.2q?14),der(13)t(8;13)(p11.1;p11.1).arr[GRCh37] 8p23.3p11.1(164984_43674370)x3 | Trisomy 8p |
|
| ||||
| 324 | F | Hemihyperplasia | Hypomethylation | Isolated hemihyperplasia |
| 447 | M | Short stature, relative macrocephaly, frontal bossing, clinodactyly of the 5th fingers | Hypomethylation | Silver‐Russell syndrome |
| 471 | M | Omphalocele, ear lobe creases | Hypomethylation | Beckwith‐Wiedemann syndrome |
|
| ||||
| 48 | M | ID, long face, hand flapping |
| Fragile X syndrome |
| 492 | M | ID, DD, epilepsy, hand biting, large testes |
| Fragile X syndrome |
|
| ||||
| 449 | M | SGA, short stature, relative macrocephaly, facial dysmorphism | arr[GRCh37] 7p15.3q21.11(24803592_81535350)x2 hmz,7q34q36.3(138746752_159126310)x2 hmz | UPD7, clinically suggestive of Silver‐Russell syndrome (maternal UPD) |
|
| ||||
| 88 | M | Bilateral radial aplasia, bilateral ulnar hypoplasia, thrombocytopenia | arr[GRCh37] 1.q21.1(145395440_145762959) (paternal) | Thrombocytopenia‐absent radius (TAR) syndrome |
Note: Only patients for whom informed consent was obtained are included in this table.
Abbreviations: DD, developmental delay; HLHS, hypoplastic left heart syndrome; ID, intellectual disability; PDA, patent ductus arteriosus; SGA, small for gestational age; TAPVD, total anomalous pulmonary venous drainage; UPD, uniparental disomy.
Previously published (Lo‐A‐Njoe et al., 2016).
FIGURE 1Molecular diagnostic results. (a) Variant types. (b) Mode of inheritance in patients with small variants (single nucleotide variants or small insertions and/or deletions). (c) Molecular diagnostic yield per primary reason for referral (reason for referral only included if n > 10). (d) Molecular diagnostic yield per type of genetic test (genetic test only included if n > 10). AD, autosomal dominant; AR, autosomal recessive; CA, congenital anomalies; CNVs, copy number variants; CTD, connective tissue disorder; DD/ID, developmental delay and/or intellectual disability (with or without other anomalies); NGS, next‐generation sequencing; NGS, next‐generation sequencing; UPD, uniparental disomy
Impact on clinical management of molecularly confirmed diagnosis
| Consequence in management |
|
|---|---|
| Referral to health professional(s) | 13 |
| Change in therapy/medication | 11 |
| Standardized follow‐up care | 9 |
| Additional diagnostics | 5 |
| Guided clinical decision making | 4 |
| Change in surveillance | 3 |
| Treatment limitations | 3 |
| (Avoid) overseas referral | 2 |
| Tailored advice | 2 |
| Access to support services | 2 |
Note: Total does not add up to 46, as there were several different clinical consequences for some patients.