Literature DB >> 35246374

The space between notes: emerging roles for translationally silent ribosomes.

Patrick R Smith1, Sapna C Pandit2, Sarah Loerch2, Zachary T Campbell3.   

Abstract

In addition to their central functions in translation, ribosomes can adopt inactive structures that are fully assembled yet devoid of mRNA. We describe how the abundance of idle eukaryotic ribosomes is influenced by a broad range of biological conditions spanning viral infection, nutrient deprivation, and developmental cues. Vacant ribosomes may provide a means to exclude ribosomes from translation while also shielding them from degradation, and the variable identity of factors that occlude ribosomes may impart distinct functionality. We propose that regulated changes in the balance of idle and active ribosomes provides a means to fine-tune translation. We provide an overview of idle ribosomes, describe what is known regarding their function, and highlight questions that may clarify their biological roles.
Copyright © 2022 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  eEF2K; hibernating ribosome; idle ribosome; mTOR; vacant ribosome

Mesh:

Substances:

Year:  2022        PMID: 35246374      PMCID: PMC9106873          DOI: 10.1016/j.tibs.2022.02.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   14.264


  108 in total

1.  Translation termination in eukaryotes: polypeptide release factor eRF1 is composed of functionally and structurally distinct domains.

Authors:  L Y Frolova; T I Merkulova; L L Kisselev
Journal:  RNA       Date:  2000-03       Impact factor: 4.942

Review 2.  Regulation and roles of elongation factor 2 kinase.

Authors:  Christopher G Proud
Journal:  Biochem Soc Trans       Date:  2015-06       Impact factor: 5.407

Review 3.  Ribosomopathies: There's strength in numbers.

Authors:  Eric W Mills; Rachel Green
Journal:  Science       Date:  2017-11-03       Impact factor: 47.728

4.  Methylation of eukaryotic elongation factor 2 induced by basic fibroblast growth factor via mitogen-activated protein kinase.

Authors:  Gyung Ah Jung; Bong Shik Shin; Yeon Sue Jang; Jae Bum Sohn; Seon Rang Woo; Jung Eun Kim; Go Choi; Kyung Mi Lee; Bon Hong Min; Kee Ho Lee; Gil Hong Park
Journal:  Exp Mol Med       Date:  2011-10-31       Impact factor: 8.718

5.  The mRNA-binding protein Serbp1 as an auxiliary protein associated with mammalian cytoplasmic ribosomes.

Authors:  Akiko Muto; Yoshihiko Sugihara; Minami Shibakawa; Kenzi Oshima; Tsukasa Matsuda; Daita Nadano
Journal:  Cell Biochem Funct       Date:  2018-07-23       Impact factor: 3.685

6.  Functional Dynamics within the Human Ribosome Regulate the Rate of Active Protein Synthesis.

Authors:  Angelica Ferguson; Leyi Wang; Roger B Altman; Daniel S Terry; Manuel F Juette; Benjamin J Burnett; Jose L Alejo; Randall A Dass; Matthew M Parks; C Theresa Vincent; Scott C Blanchard
Journal:  Mol Cell       Date:  2015-10-22       Impact factor: 17.970

7.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

8.  Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites.

Authors:  Andreas H Ratje; Justus Loerke; Aleksandra Mikolajka; Matthias Brünner; Peter W Hildebrand; Agata L Starosta; Alexandra Dönhöfer; Sean R Connell; Paola Fucini; Thorsten Mielke; Paul C Whitford; José N Onuchic; Yanan Yu; Karissa Y Sanbonmatsu; Roland K Hartmann; Pawel A Penczek; Daniel N Wilson; Christian M T Spahn
Journal:  Nature       Date:  2010-12-02       Impact factor: 49.962

9.  Functionally distinct roles for eEF2K in the control of ribosome availability and p-body abundance.

Authors:  Patrick R Smith; Sarah Loerch; Nikesh Kunder; Alexander D Stanowick; Tzu-Fang Lou; Zachary T Campbell
Journal:  Nat Commun       Date:  2021-11-23       Impact factor: 14.919

10.  Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.

Authors:  Rebecca M Voorhees; Albert Weixlbaumer; David Loakes; Ann C Kelley; V Ramakrishnan
Journal:  Nat Struct Mol Biol       Date:  2009-04-12       Impact factor: 15.369

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  1 in total

1.  Bidirectional sequestration between a bacterial hibernation factor and a glutamate metabolizing protein.

Authors:  David Ranava; Christopher M Scheidler; Martin Pfanzelt; Michaela Fiedler; Stephan A Sieber; Sabine Schneider; Mee-Ngan F Yap
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

  1 in total

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