| Literature DB >> 35237535 |
Desh Deepak Singh1, Anshul Sharma2, Hae-Jeung Lee2,3,4, Dharmendra K Yadav5.
Abstract
Multiple variants of SARS-CoV-2 have emerged and are now prevalent at the global level. Currently designated variants of concern (VOCs) are B.1.1.7, B1.351, P.1, B.1.617.2 variants and B.1.1.529. Possible options for VOC are urgently required as they carry mutations in the virus spike protein that allow them to spread more easily and cause more serious illness. The primary targets for most therapeutic methods against SARS-CoV-2 are the S (Spike) protein and RBD (Receptor-Binding Domain), which alter the binding to ACE2 (Angiotensin-Converting Enzyme 2). The most popular of these strategies involves the use of drug development targeting the RBD and the NTD (N-terminal domain) of the spike protein and multiple epitopes of the S protein. Various types of mutations have been observed in the RBDs of B.1.1.7, B1.351, P. and B.1.620. The incidence of RBD mutations increases the binding affinity to the ACE2 receptor. The high binding affinity of RBD and ACE2 has provided a structural basis for future evaluation of antibodies and drug development. Here we discuss the variants of SARS-CoV-2 and recent updates on the clinical evaluation of antibody-based treatment options. Presently, most of the antibody-based treatments have been effective in patients with SARS-CoV-2. However, there are still significant challenges in verifying independence, and the need for further clinical evaluation.Entities:
Keywords: SARS-CoV-2; antibody; efficacy; neutralization; treatment; variant
Mesh:
Substances:
Year: 2022 PMID: 35237535 PMCID: PMC8883582 DOI: 10.3389/fcimb.2022.839170
Source DB: PubMed Journal: Front Cell Infect Microbiol ISSN: 2235-2988 Impact factor: 5.293
List of important pathogenic coronaviruses their host organisms, genera name, and associated clinical manifestations.
| S. No. | Name | Host organism | Genera name | Clinical manifestations |
|---|---|---|---|---|
| 1 | Feline infectious peritonitis virus | Cat | Alpha | Vasculitis, fever, serositis, with or without effusions |
| 2 | Camel alphacoronavirus isolate camel/Riyadh | Camel | Alpha | Asymptomatic |
| 3 | Canine CoV/TU336/F/2008 | Dog | Alpha | Diarrhea and mild clinical signs |
| 4 | SeACoV-CH/GD-01 | Pig | Alpha | Acute and severe diarrhea and vomiting |
| 5 | TGEV/PUR46-MAD | Pig | Alpha | Diarrhea |
| 6 | PRCV/ISU-1 | Pig | Alpha | Mild respiratory tract infections (RTIs) |
| 7 | PEDV/ZJU-G1-2013 | Pig | Alpha | Severe watery diarrhea |
| 8 | Human CoV-NL63 | Human | Alpha | Mild RTIs |
| 9 | Human CoV-229E | Human | Alpha | Mild RTIs |
| 10 | MHV-A59 | Mouse | Beta | Severe lung injuries and acute pneumonia |
| 11 | Equine CoV/Obihiro12-1 | Horse | Beta | Leucopenia, fever, and anorexia |
| 12 | Bovine CoV/ENT | Cow | Beta | Diarrhea |
| 13 | MERS-CoV | Human | Beta | Severe acute respiratory syndrome |
| 14 | SARS-CoV | Human | Beta | Severe acute respiratory syndrome |
| 15 | Human CoV-OC43 | Human | Beta | Mild RTIs |
| 16 | Human CoV-HKU1 | Human | Beta | Pneumonia |
| 17 | IBV | Chicken | Gamma | Severe respiratory disease |
| 18 | Beluga Whale CoV/SW1 | Whale | Gamma | Terminal acute liver failure and pulmonary disease |
| 19 | Sparrow coronavirus HKU17 | Sparrow | Delta | Respiratory disease |
| 20 | Bulbul coronavirus HKU11 | Bulbul | Delta | Respiratory disease |
Figure 1Schematic representation of receptor recognition and binding, spike receptor binding mechanism, receptor binding domain and receptor binding motifs. * γ-genus is belong to Avian infectious bronchitis virus (IBV).
Relative risk level for variants of concern (VOC).
| Identification | WHO level | Alpha | Alpha | Beta | Delta | Gamma |
|---|---|---|---|---|---|---|
|
| B.1.1.7 | Alpha with E484K | B.1.351 | B.1.617.2 | P.1 | |
|
| VOC−20DEC−01 | VOC−21Feb−02 | VOC−20DEC−02 | VOC−21APR−02 | VOC−21JAN−02 | |
|
| 20I (V1) | 20I (V1) | 20H (V2) | 21A | 20J (V3) | |
|
|
| United Kingdom | United Kingdom | South Africa | India | Brazil |
|
| 20 Sep 2020 | 26 Jan 2021 | May 2020 | Oct 2020 | Nov 2020 | |
|
| 18 Dec 2020 | 5 Feb 2021 | 14 Jan 2021 | 6 May 2021 | 15 Jan 2021 | |
|
|
| 69–70del, N501Y, P681H | E484K, 69–70del, N501Y, P681H | K417N, E484K, N501Y | L452R, T478K, P681R | K417T, E484K, N501Y |
|
| +29% (24–33%) | +29% (24–33%) | +25% (20–30%) | +97% (76–117%) | +38% (29–48%) | |
|
| +52% (47–57%) | +52% (47–57%) | Under investigation | +85% (39–147%) | Possibly increased | |
|
| +59% (44–74%) CFR 0.06% for <50 age group, 4.8% for >50 age group | +59% (44–74%) CFR 0.06% for <50 age group, 4.8% for >50 age group | Possibly increased | +137% (50–230%) CFR 0.04% for <50 age group unvaccinated, 6.5% for >50 age group unvaccinated | +50% (50% CrI, 20–90%) | |
|
|
| Minimal reduction | Considerably reduced | Reduced, T cell response elicited by D614G virus remains effective | Reinfections happened, with smaller occurrence rate than vaccinated infections | Efficacy reduction for non-severe disease |
|
| Minimal reduction | Considerably reduced | Efficacy: reduced against symptomatic disease, retained against severe disease | Efficacy reduction for non-severe disease | Retained by many |
List of variants for further monitoring.
| Pango lineage | GISAID clade | Date of designation | Comments |
|---|---|---|---|
| R.1 | GR | 07-04-2021 | It has found in more than 30 countries, E484K and W152L mutation have been observed, it may cause immune escape. |
| B.1.466.2 | GH | 28-04-2021 | First sampled in Indonesia, in Nov 2021. |
| B.1.1.318 | GR | 02-06-2021 | Detected in the UK, it was named Fin-796H after found in Finland with E484K and D796H mutations originate from Nigeria. |
| B.1.1.519 | GR | 02-06-2021 | Variants Under Monitoring (VUM) in Nov 2021. |
| C.36.3 | GR | 16-06-2021 | VUM in Nov 2021. |
| B.1.214.2 | G | 30-06-2021 | VUM in Nov 2021. |
| B.1.427 B.1.429 | GH/452R.V1 | 06-07-2021 | VUM in Nov 2021. Epsilon, first sample was observed in the United States. |
| B.1.1.523 | GR | 14-07-2021 | VUM in Nov 2021.multiple countries |
| B.1.619 | G | 14-07-2021 | VUM in Nov 2021.multiple countries |
| B.1.620 | G | 14-07-2021 | Detected in Lithuania, Central Africa, North America, France and Belgium, the lineage contains an E484K, P681H, S477N and D614G mutation |
| C.1.2 | GR | 01-09-2021 | It was detected in England and China, Portugal, Switzerland, Democratic Republic of the Congo (DRC), Mauritius, and New Zealand with multiple substitutions C136F, R190S, D215G, Y449H, N484K, N501Y, H655Y, N679K and T859N and deletions (Y144del, L242-A243del) in the spike protein. |
| B.1.617.1 | G/452R.V3 | 20-09-2021 | Kappa |
| B.1.562 | GH/253G.V1 | 20-09-2021 | Iota |
| B.1.525 | G/484K.V3 | 20-09-2021 | Eta |
| B.1.630 | GH | 12-10-2021 | Identified in March 2021, Dominican Republic. |
| B.1.1.529 | GR/484A, 200 | 24-11-2021 | Named Omicron by the WHO, identified in November 2021 in more than 15 countries. |
Recent updates on clinical data of anti-SARS-CoV-2 selected monoclonal antibodies.
| Double-blind, randomized controlled trial in SARS-CoV-2 patients with mild- to -moderate | Phase | Dose concentration | Inclusion criteria | Interventions compared to placebo | Participant characteristics | Interpretation (compared to placebo) | Primary endpoint | Primary outcomes (SARS-CoV-2-related hospitalizations over days) |
|---|---|---|---|---|---|---|---|---|
| Bamlanivimab (BAM) | Double-Blind, Phase 3 | 700 mg + Etesevimab + 1,400 mg in Nonhospitalized | Aged ≥12 years | BAM 700 mg + ETE 1,400 mg ( | Median age 56 years; 30% ≥65, 76% mild and 24% had moderate SARS-CoV-2 patient. | 5% absolute reduction and 87% relative reduction in SARS-CoV-2-related hospitalizations. | defined as ≥24 hours of acute care. | Day 29: 0 in BAM plus ETE arm vs. 4 (1.6%) in placebo arm; |
| At high risk for severe SARS-CoV-2 patient. | ||||||||
| Bamlanivimab with Etesevimab | Phase 3 | Bamlanivimab 2,800 mg Plus Etesevimab (ETE) 2,800 mg in Nonhospitalized patients | Aged ≥12 years | In 3 days of a positive SARS-CoV-2 patient, BAM 2,800 mg with ETE 2,800 mg ( | Mean age 53.8 years; 31% ≥65 years; 52% female; 48% male | Placebo with 4.8% absolute reduction and 70% relative in hospitalized patients. | Proportion of patients with SARS-CoV-2-related hospitalization | Day 7: 9.8% in BAM plus ETE arm vs. 29.5% in placebo arm ( |
| At high risk for severe SARS-CoV-2 or hospitalization | ||||||||
| Casirivimab (CAS) Plus Imdevimab (IMD) in Nonhospitalized | Phase 3 | Aged ≥18 years with SARS-CoV-2 positive; Symptom onset within 7 days of randomization; analysis only: ≥1 risk factor for severe SARS-CoV-2. | Single IV (intravenous)infusion of CAS 600 mg with IMD 600 mg ( | CAS 600 mg plus IMD 600 mg ( | Median age 50 years; 35% Hispanic/Latinx; 5% Black/African American. | CAS 600 mg with IMD 600 mg was associated with 2.2% absolute reduction and 70% relative risk reduction in SARS-CoV-2 Patients. | Proportion of patients with SARS-CoV-2-related hospitalization through Day 29. | Day 29,7 (1.0%) in CAS 600 mg with IMD 600 mg arm vs. 24 (3.2%) in placebo arm ( |
| Sotrovimab (SOT) in Non-hospitalized patients with mild -to- moderate SARS-CoV-2 | Phase -III | SOT 500 mg, Placebo ( | Aged ≥18 years with ≥1 comorbidity, aged ≥55 years, Symptom onset ≤5 days Laboratory-confirmed SARS-CoV-2. | SOT 500 mg IV ( | Median age 53 years; 22% ≥65 years | Receipt of SOT was associated with 6% absolute reduction and 85% relative risk reduction. | Proportion of patients with all-cause hospitalization or death by Day 29 | Day 29: 3 (1%) in SOT arm vs. 21 (7%) in placebo arm ( |
| Placebo ( | 63% Hispanic/Latinx; 7% Black/African American |
Recent updates on clinical evaluation of selected interleukin-6 inhibitors.
| Open-Label RCT in hospitalized patients with SARS-CoV-2 | Key inclusion criteria | Participant characteristics (PCR-confirmed SARS-CoV-2 infection) | Key limitations | Interventions | Primary outcomes | Key secondary endpoints |
|---|---|---|---|---|---|---|
| Tocilizumab | Oxygen saturation (SpO2) <92% on room air or receipt of supplemental oxygen | Mean age 63.6 years; 67% male; 76% White, 41% on HFNC or non-invasive ventilation,14% on IMV,82% on corticosteroids. | Arbitrary enrollment cut off at CRP ≥75 mg/L | 800 mg tocilizumab) and probable second dose ( | Day 28 mortality was lower in tocilizumab arm than in usual care arm (31% vs. 35%; rate ratio 0.85; 95% CI, 0.76–0.94; | Among those not on IMV at enrollment, receipt of IMV (invasive mechanical ventilation) or death. |
| C-reactive protein (CRP)≥75 mg/L | Difficult to define exact subset of patients in RECOVERY cohort who were subsequently selected for secondary randomization/tocilizumab trial | |||||
| Tocilizumab and Sarilumab | Receipt of IMV, noninvasive ventilation, or cardiovascular support. | Mean age 60 years; Median time from ICU admission until enrollment was 14 hours | Enrollment in tocilizumab and sarilumab arms was partially nonconcurrent with SOC (Standard of care) arm. | Tocilizumab 8 mg/kg and possible second dose, plus SOC ( | 1.46 (95% CrI, 1.13–1.87). | 66% in tocilizumab arm and 63% in SOC arm (aOR 1.42; 95% CrI, 1.05–1.93). |
| Sarilumab | Aged ≥18 years; SARS-CoV-2 pneumonia. | Median age 59 years; 63% male; 77% White; 36% Hispanic/Latinx; 39% on HFNC, IMV, or non-invasive mechanical ventilation. | Only 20% of patients received corticosteroids. | There was no benefit of sarilumab in hospitalized adults with SARS-CoV-2 in time to clinical improvement. | No difference in median time to clinical Improvement among the sarilumab arms. | (92% in placebo arm vs. 90% in sarilumab 200 mg arm vs. 92% in sarilumab 400 mg arm). |
Figure 2Inhibition of intracellular signaling by Tocilizumab Humanized Antibody against IL-6.
Randomized clinical trials supporting mAbs approved by FDA EUAs.
| Monoclonal antibody | Clinical trial number | Study Design | Methods | Results | References | ||
|---|---|---|---|---|---|---|---|
| Intervention: | Primary endpoint | Number of Participants | Primary outcome | ||||
| Bamlanivimab plus etesevimab | (Trial Number NCT04427501) | Double-blind, phase 3 randomized clinical trial in outpatients with mild to moderate SARS-CoV-2 who are at high risk for progressing to severe SARS-CoV-2 and/or hospitalization | Single intravenous infusion of etesevimab 2800 mg - Placebo with amlanivimab 2800 mg+ | Proportion of participants with SARS-CoV-2 related hospitalization or death by any cause by day 29 | bamlanivimab + etesevimab ( | Proportion of participants with SARS-CoV-2 related hospitalization in the bamlanivimab + etesevimab |
|
| Casirivimab plus imdevimab | NCT04425629 | Double-blind, Phase 3 RCT in outpatients with mild to moderate SARS-CoV-2 | Single intravenous infusion of: - casirivimab 600 mg + imdevimab 600 mg - casirivimab 1200 mg + imdevimab 1200 mg | Proportion of patients with SARS-CoV-2-related hospitalization or all-cause death through Day 29 | SARS-CoV-2-related hospitalization or all-cause death through Day 29 | Casirivimab 600 mg + imdevimab 600 mg ( |
|
| Sotrovimab | NCT04545060 | Double-blind, Phase 1/2/3 RCT in outpatients with mild to moderate SARS-CoV-2 | Sotrovimab 500 mg IV - Placebo | Proportion of patients with hospitalization or death from any cause by Day 29 | Proportion of patients with hospitalization or death from any cause by Day 29 | Sotrovimab ( | Gupta et al., 2021 |
Figure 3Strategies to generate tailored virus-specific T cells as potential therapeutics for prophylaxis and/or treatment of SARS-CoV-2 infection among vulnerable populations. Monocyte DCs from individuals are treated with SARS-CoV-2 peptide and then used to prime T cells from the same individual to generate SARS-CoV-2-specific T cells. These T cells can be cryopreserved or injected into vulnerable people to prevent or treat SARS-CoV-2.
Mutations of SARS-CoV-2 S in VOC and resistance profile of clinical mAbs.
| VOC | Bamlanivimab | Etesevimab | Casirivimab | Indevimab | Sotrovimab | Cilgavimab | Tixagevimab | Regdanvimab |
|---|---|---|---|---|---|---|---|---|
| B.1.351 (South Africa) | Resistant | R | Resistant | Sensitive | Sensitive | Sensitive | Sensitive | Poorly neutralized or not neutralized |
| B.1.1.7 (UK) | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive |
| P.1 (Brazil) | Resistant | Resistant | Resistant | Sensitive | Sensitive | Sensitive | Sensitive | Poorly neutralized or not neutralized |
| B.1.1.258 (Scotland) | Sensitive | Not known | Sensitive | Resistant | Sensitive | Not known | Not known | Poorly neutralized or not neutralized |
| B.1.526 (New York) | Potential Sensitive pot | Potential Sensitive pot | Potential Sensitive pot | Potential Sensitive pot | Sensitive | Potential Sensitive pot | Potential Sensitive pot | Not known |
| B.1.617.1 (India) | Resistant | Sensitive | Sensitive | Sensitive | Sensitive | Potential Sensitive pot | Potential Sensitive pot | Not known |
| B.1.525 (Nigeria) | Poorly neutralized or not neutralized | Poorly neutralized or not neutralized | Potential Sensitive pot | Potential Sensitive pot | Sensitive | Potential Sensitive pot | Potential Sensitive pot | Not known |
| B.1.429 (California) | Resistant | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive | Sensitive | Poorly neutralized or not neutralized |