| Literature DB >> 35235704 |
Samaneh Jafari Roshan1,2, Yaser Mansoori3, Seyed Reza Hosseini4, Davood Sabour2, Abdolreza Daraei5.
Abstract
BACKGROUND: Loci controlling DNA double-strand breaks (DSBs) repair play an important role in defending against the harmful health effects of benzene, toluene, ethylbenzene, and xylene (BTEX), but their gene variants may alter their repair capacity. The aim of the current study was to determine the relationship of functional polymorphisms ATM-rs228589 A>T, WRN-rs1800392 G>T and H2AX-rs7759 A>G in DBS repair loci with the abnormal hematological indices in workers who exposed to BTEXs.Entities:
Keywords: ATM-rs228589 A>T; BTEXs; H2AX-rs7759 A>G; WRN-rs1800392 G>T; hematotoxicity
Mesh:
Substances:
Year: 2022 PMID: 35235704 PMCID: PMC8993635 DOI: 10.1002/jcla.24321
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Details of RFLP‐PCR technique in genotyping of SNPs under investigation
| Polymorphism | Enzyme | PCR product size | Recognition sequence and cutting site | Restriction fragments (bp) |
|---|---|---|---|---|
| ATM‐RS228589 A>T | BseGI | 258 | 5′…G G A T G N N |
AA;258(no cut) AT;128+130+258 TT;128+130 |
| H2AX‐RS7759 A>G | BsiHKAI | 283 | 5′…G T G C T |
AA;283(no cut) AG;126+157+283 GG;126+157 |
| WRN‐RS1800392 G>T | HinfI | 219 | 5′…G |
GG;219(no cut) GT;219+86+133 TT;86+133 |
Abbreviations: ATM, ataxia telangiectasia mutated; bp, base pair; PCR, polymerase chain reaction.
FIGURE 1The PCR assay and agarose gel electrophoresis for genotyping of ATM‐RS228589 A>T, WRN‐RS1800392 G>T, and H2AX‐RS7759 A>G Polymorphisms. (A) M: 50bp DNA ladder; lanes 1–3: PCR products showing 219bp (WRN‐RS1800392 G>T); lane 4: negative control. (B) M: 50bp DNA ladder; lanes 1–3: PCR products showing 283bp (H2AX‐RS7759 A>G); lane 4: negative control. (C) M: 50bp DNA ladder; lanes 1–2: PCR products showing 258bp (ATM‐RS228589 A>T); lane 3: negative control. (D) The digested PCR products and corresponding different genotypes: From left to right: Lane M marker (50bp ladder); lanes 1–3 show three different genotypes of H2AX rs7759; lane 1 represents heterozygote A/G with 283, 157, and 126bp bands; lane 2 is homozygote A/A with single 283bp band; lane 3 is homozygote G/G with 157 and 126bp bands. Lanes 4–6 display genotypes for ATM rs228589: lane 4 represents homozygote A/A with single 258bp band; lane 5 represents homozygote T/T with 135 and 123bp bands; lane 6 shows heterozygote A/T with 258, 135 and 123bp bands. Lanes 7–9 indicate WRN rs1800392 genotypes: lane 7 represents heterozygote G/T with 219, 133, and 86bp bands; lane 8 represents homozygote T/T with 133 and 86bp bands; lane 9 represents homozygote G/G with single 219bp band
Characteristics of the BTEXs and other variables in two groups of the study participants
| Variables |
Case
|
Control
|
|
|---|---|---|---|
| Age (years) | 34.25 ± 6.54 | 34.59 ± 5.58 | 0.60 |
| BMI (kg/m2) | 25.86 ± 3.37 | 25.97 ± 3.12 | 0.92 |
| Length of exposure in a day (hours) | 11.79 ± 1.43 | 11.66 ± 1.42 | 0.47 |
| Job history (year) | 7.46 ± 3.96 | 7.92 ± 4.34 | 0.36 |
| Smoking: no (%) | |||
| Yes | 7 (5.2%) | 10 (6.8%) | 0.55 |
| No | 128 (94.8%) | 136 (93.2%) | |
| BTEX‐exposure measurements (ppm) | |||
| Benzene | 0.61 ± 1.600 | 0.75 ± 1.647 | 0.56 |
| Toluene | 1.05 ± 2.100 | 1.02 ± 2.09 | 0.76 |
| Ethylbenzene | 1.45 ± 2.53 | 1.27 ± 2.70 | 0.47 |
| o‐xylene | 0.424 ± 1.31 | 0.399 ± 1.61 | 0.28 |
| p‐xylene | 2.46 ± 3.09 | 2.29 ± 3.01 | 0.62 |
| M xylene | 1.65 ± 2.44 | 1.81 ± 2.62 | 0.60 |
Data are presented as mean ± SD or number (percentage); Student t test was used to determine the statistical significance of the differences in quantitative variables and the chi‐square test was used for categorical variables; p‐value < 0.05 was considered statistically significant
Abbreviations: BMI, body mass index; BTEX, benzene toluene ethylbenzene xylene.
Data on hematological indices in case and control subjects
| Hematological indices | Case | Control |
|
|---|---|---|---|
| WBC (×109/L) | 8.15 ± 1.86 | 7.19 ± 1.86 | 0.701 |
| RBC (×1012/L) | 4.90 ± 0.390 | 4.84 ± 0.322 | 0.466 |
| Hgb (g/dl) | 14.74 ± 2.071 | 15.06 ± 0.815 |
|
| HCT (%) | 42.92 ± 4.64 | 43.57 ± 2.11 |
|
| MCV (fL) | 87.95 ± 10.28 | 90.05 ± 3.51 |
|
| MCH (Pg) | 30.22 ± 4.45 | 31.13 ± 1.38 |
|
| MCHC (g/dl) | 34.25 ± 1.54 | 34.53 ± 0.680 |
|
| RDW (%) | 12.17 ± 0.649 | 12.02 ± 0.598 |
|
| PLT (×109/L) | 204.6 ± 36.69 | 210.3 ± 50.23 | 0.842 |
| Lymphocytes (%) | 46.15 ± 7.94 | 38.10 ± 6.80 |
|
| Monocytes (%) | 2.94 ± 8.33 | 3.83 ± 2.43 | 0.326 |
| Granulocytes (%) | 51.04 ± 7.94 | 58.05 ± 6.70 |
|
Values are given as the mean ± standard deviation; Student t test for comparing the difference of hematological indices in the case and control groups was used; p‐value < 0.05 was considered statistically significant (in bold).
Abbreviations: HCT, hematocrit; Hgb, hemoglobin; MCH, mean corpuscular hemoglobin; MCHC, mean corpuscular hemoglobin concentration; MCV, mean corpuscular volume; PLT, platelet; RBC, red blood cell count; RDW, red cell distribution width; WBC, white blood cell count.
Genotype and allele distribution of the selected polymorphisms in study population groups
| SNPs |
Cases (
|
Controls (
|
| P‐HWE |
|---|---|---|---|---|
| rs228589A>T | ||||
| Genotypes | ||||
| AA | 63 (44.7) | 91 (59.9) | ||
| AT | 66 (46.8) | 53 (34.9) |
| |
| TT | 12 (8.5) | 8 (5.3) | 0.64 | |
| Alleles |
| |||
| A | 192 (68.1) | 235 (77.3) | ||
| T | 90 (31.9) | 69 (22.7) | ||
| rs7759A>G | ||||
| Genotypes | ||||
| AA | 54 (38.3) | 85 (55.9) | ||
| AG | 66 (46.8) | 58 (38.2) | ||
| GG | 21 (14.9) | 9 (5.9) |
| 0.76 |
| Alleles | ||||
| A | 174 (61.7) | 228 (75) |
| |
| G | 108 (38.3) | 76 (25) | ||
| rs1800392G>T | ||||
| Genotypes | ||||
| GG | 60 (42.6) | 76 (50) | ||
| GT | 62 (44) | 61 (40.1) | 0.377 | |
| TT | 19 (13.5) | 15 (9.9) | 0.44 | |
| Alleles | ||||
| G | 182 (64.5) | 213 (70.1) | 0.154 | |
| T | 100 (35.5) | 91 (29.9) | ||
Data are presented as number and percentage; chi‐square test was applied; Bold values are statistically significant (p < 0.05).
Abbreviations: P‐HWE, p value for Hardy–Weinberg equilibriumSNPs, single‐nucleotide polymorphisms.
The genotyping was successful in 141 cases and 152 controls for rs228589, rs7759, and rs1800392 polymorphisms.
Association results between SNP genotypes and patterns of hematological parameters in multiple inheritance models
| SNPs | Genotype models | Genotypes | Population groups |
Unadjusted OR (95% CI) |
|
Adjusted OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|
|
Cases ( |
Controls ( | |||||||
| ATM‐rs228589 A>T | Codominant |
A/A A/T T/T | 63 (44.7%) | 91 (59.9%) | 1 | 1 | ||
| 66 (46.8%) | 53 (34.9%) | 1.799 (1.109–2.917) |
| 1.829 (1.107–3.023) |
| |||
| 12 (8.5%) | 8 (5.3%) | 2.167 (0.838–5.605) | 0.111 | 2.464 (0.88–6.899) | 0.086 | |||
| Dominant |
A/A A/T + T/T | 63 (44.7%) | 91 (59.9%) | 1 | 1 | |||
| 78 (55.3%) | 61 (40.1%) | 1.847 (1.161–2.938) |
| 1.890 (1.163–3.071) |
| |||
| Recessive |
A/A + A/T T/T | 129 (91.5%) | 144 (94.7%) | 1 | 1 | |||
| 12 (8.5%) | 8 (5.3%) | 1.674 (0.664–4.225) | 0.275 | 1.629 (0.622–4.265) | 0.321 | |||
| Overdominant |
A/A + T/T A/T | 75 (53.2%) | 99 (65.1%) | 1 | 1 | |||
| 66 (46.8%) | 53 (34.9%) | 1.644 (1.028–2.629) |
| 1.680 (1.032–2.734) |
| |||
| H2AX‐rs7759 A>G | Codominant |
A/A A/G G/G | 54 (38.3%) | 85 (55.9%) | 1 | 1 | ||
| 66 (46.8%) | 58 (38.2%) | 1.791 (1.097–2.926) |
| 2 (1.192–3.356) |
| |||
| 21 (14.9%) | 9 (5.9%) | 3.673 (1.567–8.611) |
| 3.472 (1.451–8.305) |
| |||
| Dominant |
A/A A/G + G/G | 54 (38.3%) | 85 (55.9%) | 1 | 1 | |||
| 87 (61.7%) | 67 (44.1%) | 2.044 (1.282–3.260) |
| 2.239 (1.371–3.657) |
| |||
| Recessive |
A/A + A/G G/G | 120 (85.1%) | 143 (94.1%) | 1 | ||||
| 21 (14.9%) | 9 (5.9%) | 2.781 (1.227–6.299) |
| 2.594 (1.129–5.957) |
| |||
| Overdominant |
A/A + G/G A/G | 75 (53.2%) | 94 (61.8%) | 1 | 1 | |||
| 66 (46.8%) | 58 (38.2%) | 1.426 (0.896–2.271) | 0.135 | 1.582 (0.970–2.581) | 0.066 | |||
| WRN‐rs1800392 G>T | Codominant |
G/G G/T T/T | 60 (42.5%) | 76 (50%) | 1 | 1 | ||
| 62 (44%) | 61 (40.1%) | 1.287 (0.789–2.100) | 0.312 | 1.427 (0.852–2.391) | 0.177 | |||
| 19 (13.5%) | 15 (9.9%) | 1.604 (0.753–3.420) | 0.221 | 1.666 (0.775–3.584) | 0.191 | |||
| Dominant |
G/G G/T + T/T | 60 (42.6%) | 76 (50%) | 1 | 1 | |||
| 81 (57.4%) | 76 (50%) | 1.350 (0.851–2.141) | 0.202 | 1.496 (0.922–2.428) | 0.103 | |||
| Recessive |
G/G + G/T T/T | 122 (86.5%) | 137 (90.1%) | 1 | 1 | |||
| 19 (13.5%) | 15 (9.9%) | 1.422 (0.693–2.921) | 0.337 | 1.413 (0.684–2.917) | 0.350 | |||
| Overdominant |
G/G + T/T G/T | 79 (56%) | 91 (59.9%) | 1 | 1 | |||
| 62 (44%) | 61 (40.1%) | 1.171 (0.736–1.863) | 0.506 | 1.288 (0.791–2.097) | 0.309 | |||
Data are presented as number and percentage; Logistic regression model was applied; p‐value < 0.05 was considered statistically significant (in bold).
Abbreviations: ATM, ataxia telangiectasia mutated; CI, confidence interval; OR, odds ratio; SNPs, single‐nucleotide polymorphisms.
Adjustment for age, BMI, smoking, and length of exposure to benzene.
Genotypes of ATM‐rs228589 A>T polymorphism and their effects on the hematological parameters in the study population
| Hematological parameters | ATM genotypes in controls ( | ATM genotypes in cases ( | ||||
|---|---|---|---|---|---|---|
| TT (8) | AT (53) | AA (91) | TT (12) | AT (66) | AA (63) | |
| WBC Mean ± SD | 6.97 ± 1.831 | 6.98 ± 1.97 | 6.88 ± 1.62 | 7.105 ± 1.49 | 7.05 ± 1.51 | 6.38 ± 1.51 |
|
| Ref | 0.915 | 0.464 | Ref | 0.830 | 0.489 |
|
| 0.874 | 0.200 | ||||
| RBC Mean ± SD | 5.19 ± 0.640 | 4.96 ± 0.502 | 4.73 ± 0.343 | 4.98 ± 0.365 | 5.03 ± 0.363 | 5.02 ± 0.306 |
|
| Ref |
|
| Ref | 0.179 | 0.278 |
|
|
| 0.788 | ||||
| HB Mean ± SD | 14.84 ± 1.53 | 14.76 ± 1.54 | 14.35 ± 1.28 | 15.33 ± 0.815 | 15.31 ± 0.900 | 15.36 ± 0.850 |
|
| Ref | 0.845 | 0.270 | Ref | 0.784 | 0.809 |
|
| 0.311 | 0.919 | ||||
| HCT Mean ± SD | 44.12 ± 4.05 | 42.99 ± 3.09 | 43.09 ± 3.74 | 44.16 ± 2.21 | 44.27 ± 0.332 | 44.35 ± 0.500 |
|
| Ref | 0.091 | 0.289 | Ref | 0.371 | 0.442 |
|
| 0.365 | 0.827 | ||||
| MCV Mean ± SD | 85.26 ± 9.68 | 86.42 ± 9.92 | 88.55 ± 4.04 | 88.79 ± 3.77 | 88.23 ± 3.74 | 88.48 ± 4.98 |
|
| Ref | 0.631 | 0.266 | Ref | 0.348 | 0.494 |
|
| 0.154 | 0.830 | ||||
| MCH Mean ± SD | 28.99 ± 4.38 | 30.03 ± 3.39 | 30.60 ± 1.63 | 30.83 ± 1.65 | 30.53 ± 1.75 | 30.65 ± 1.78 |
|
| Ref | 0.176 | 0.340 | Ref | 0.204 | 0.313 |
|
| 0.179 | 0.765 | ||||
| MCHC Mean ± SD | 33.84 ± 1.90 | 34.28 ± 2.08 | 34.18 ± 1.01 | 34.71 ± 0.867 | 34.59 ± 0.984 | 34.66 ± 0.942 |
|
| Ref | 0.212 | 0.563 | Ref | 0.262 | 0.358 |
|
| 0.586 | 0.873 | ||||
| RDW Mean ± SD | 12.37 ± 1.00 | 12.42 ± 0.946 | 12.65 ± 0.856 | 12.10 ± 0.558 | 12.16 ± 0.573 | 12.07 ± 0.572 |
|
| Ref | 0.630 | 0.225 | Ref | 0.560 | 0.676 |
|
| 0.362 | 0.884 | ||||
| PLT Mean ± SD | 207.4 ± 52.9 | 210.6 ± 39.6 | 231.3 ± 46.1 | 210.9 ± 40.6 | 213.0 ± 38.2 | 217.0 ± 46.2 |
|
| Ref | 0.941 | 0.285 | Ref | 0.592 | 0.627 |
|
| 0.108 | 0.682 | ||||
| LYM Mean ± SD | 44.31 ± 11.89 | 44.77 ± 9.99 | 46.22 ± 8.74 | 38.11 ± 5.32 | 37.53 ± 6.41 | 36.06 ± 4.73 |
|
| Ref | 0.883 | 0.445 | Ref | 0.827 | 0.445 |
|
| 0.576 | 0.330 | ||||
| MO Mean ± SD | 2.92 ± 1.50 | 2.99 ± 1.72 | 2.30 ± 0.961 | 3.13 ± 1.93 | 3.01 ± 1.58 | 3.31 ± 1.12 |
|
| Ref | 0.860 | 0.099 | Ref | 0.432 | 0.694 |
|
| 0.215 | 0.787 | ||||
| GR Mean ± SD | 51.59 ± 11.36 | 50.99 ± 10.28 | 49.95 ± 8.55 | 58.09 ± 5.70 | 58.22 ± 7.46 | 58.73 ± 5.77 |
|
| Ref | 0.815 | 0.515 | Ref | 0.992 | 0.931 |
|
| 0.628 | 0.785 | ||||
Data are presented as the mean ± standard deviation; Linear regression was applied; Bold values are statistically significant (p < 0.05).
Abbreviations: ATM, ataxia telangiectasia mutated; HCT, hematocrit; Hgb, hemoglobin; MCH, mean corpuscular hemoglobin; MCHC, mean corpuscular hemoglobin concentration; MCV, mean corpuscular volume; PLT, platelet; RBC, red blood cell count; RDW, red cell distribution width; WBC, white blood cell count.
Genotypes of H2AX‐RS7759 A>G polymorphism and their effects on the hematological parameters in the study population
| Hematological parameters | H2AX genotypes in cases ( | H2AX genotypes in controls ( | ||||
|---|---|---|---|---|---|---|
| GG (9) | AG (58) | AA (85) | GG (21) | AG (66) | AA (54) | |
| WBC Mean ± SD | 6.852 ± 1.41 | 7.24 ± 1.98 | 6.42 ± 2.270 | 7.084 ± 1.626 | 7.02 ± 1.371 | 6.91 ± 1.366 |
|
| Ref | 0.704 | 0.417 | Ref | 0.728 | 0.828 |
|
| 0.173 | 0.933 | ||||
| RBC Mean ± SD | 5.05 ± 0.609 | 5.11 ± 0.573 | 4.82 ± 0.433 | 4.96 ± 0.370 | 5.04 ± 0.355 | 5.06 ± 0.300 |
|
| Ref | 0.442 | 0.152 | Ref | 0.207 | 0.514 |
|
| 0.133 | 0.382 | ||||
| HB Mean ± SD | 14.91 ± 1.35 | 14.73 ± 1.49 | 14.45 ± 1.93 | 15.24 ± 0.875 | 15.48 ± 0.798 | 15.32 ± 0.70 |
|
| Ref | 0.199 | 0.229 | 0.117 | 0.746 | |
|
| 0.499 | Ref | 0.187 | |||
| HCT Mean ± SD | 43.76 ± 2.84 | 43.58 ± 4.07 | 42.61 ± 3.95 | 43.98 ± 2.31 | 44.61 ± 2.21 | 43.83 ± 1.73 |
|
| Ref | 0.269 | 0.141 | Ref | 0.180 | 0.836 |
|
| 0.459 | 0.230 | ||||
| MCV Mean ± SD | 87.43 ± 7.92 | 85.13 ± 9.01 | 86.21 ± 13.83 | 88.79 ± 3.86 | 88.57 ± 3.73 | 86.68 ± 3.69 |
|
| Ref | 0.245 | 0.490 | Ref | 0.491 | 0.161 |
|
| 0.422 | 0.290 | ||||
| MCH Mean ± SD | 29.87 ± 3.75 | 29.28 ± 3.92 | 30.01 ± 3.58 | 30.78 ± 1.73 | 30.76 ± 1.65 | 29.88 ± 1.41 |
|
| Ref | 0.633 | 0.971 | Ref | 0.858 | 0.194 |
|
| 0.615 | 0.316 | ||||
| MCHC Mean ± SD | 34.04 ± 1.76 | 34.20 ± 2.10 | 33.78 ± 1.85 | 34.64 ± 0.889 | 34.73 ± 0.957 | 34.50 ± 0.832 |
|
| Ref | 0.636 | 0.548 | Ref | 0.411 | 0.761 |
|
| 0.671 | 0.732 | ||||
| RDW Mean ± SD | 12.48 ± 0.889 | 12.28 ± 0.663 | 12.69 ± 1.67 | 12.12 ± 0.557 | 12.07 ± 0.567 | 12.43 ± 0.519 |
|
| Ref | 0.714 | 0.552 | Ref | 0.554 | 0.183 |
|
| 0.209 | 0.573 | ||||
| PLT Mean ± SD | 205.8 ± 44.8 | 215.3 ± 46.4 | 210.4 ± 52.6 | 209.8 ± 38.3 | 216.5 ± 42.3 | 203.5 ± .38.7 |
|
| Ref | 0.659 | 0.800 | Ref | 0.796 | 0.612 |
|
| 0.541 | 0.497 | ||||
| LYM Mean ± SD | 47.35 ± 11.04 | 44.29 ± 8.69 | 39.10 ± 13.62 | 38.28 ± 5.41 | 37.38 ± 5.98 | 36.01 ± 6.35 |
|
| Ref |
|
| Ref | 0.346 | 0.232 |
|
|
| 0.408 | ||||
| MO Mean ± SD | 2.67 ± 1.09 | 3.14 ± 1.82 | 2.65 ± 1.74 | 2.93 ± 1.66 | 3.38 ± 1.95 | 2.86 ± 1.61 |
|
| Ref | 0.811 | 0.782 | Ref | 0.168 | 0.961 |
|
| 0.168 | 0.306 | ||||
| GR Mean ± SD | 48.13 ± 10.56 | 52.10 ± 8.75 | 56.12 ± 13.62 | 58.10 ± 6.22 | 57.94 ± 6.53 | 60.32 ± 6.38 |
|
| Ref |
|
| Ref | 0.886 | 0.305 |
|
|
| 0.573 | ||||
Data are presented as the mean ± standard deviation; Linear regression was applied; Bold values are statistically significant (p < 0.05).
Abbreviations: ATM, ataxia telangiectasia mutated; HCT, hematocrit; Hgb, hemoglobin; MCH, mean corpuscular hemoglobin; MCHC, mean corpuscular hemoglobin concentration; MCV, mean corpuscular volume; PLT, platelet; RBC, red blood cell count; RDW, red cell distribution width; WBC, white blood cell count.