Literature DB >> 35233556

Simpson's Paradox in COVID-19 Case Fatality Rates: A Mediation Analysis of Age-Related Causal Effects.

Julius von Kugelgen1,2, Luigi Gresele1, Bernhard Scholkopf1.   

Abstract

We point out an instantiation of Simpson's paradox in COVID-19 case fatality rates (cfrs): comparing a large-scale study from China (February 17) with early reports from Italy (March 9), we find that cfrs are lower in Italy for every age group, but higher overall. This phenomenon is explained by a stark difference in case demographic between the two countries. Using this as a motivating example, we introduce basic concepts from mediation analysis and show how these can be used to quantify different direct and indirect effects when assuming a coarse-grained causal graph involving country, age, and case fatality. We curate an age-stratified cfr dataset with [Formula: see text]750 k cases and conduct a case study, investigating total, direct, and indirect (age-mediated) causal effects between different countries and at different points in time. This allows us to separate age-related effects from others unrelated to age and facilitates a more transparent comparison of cfrs across countries at different stages of the COVID-19 pandemic. Using longitudinal data from Italy, we discover a sign reversal of the direct causal effect in mid-March, which temporally aligns with the reported collapse of the healthcare system in parts of the country. Moreover, we find that direct and indirect effects across 132 pairs of countries are only weakly correlated, suggesting that a country's policy and case demographic may be largely unrelated. We point out limitations and extensions for future work, and finally, discuss the role of causal reasoning in the broader context of using AI to combat the COVID-19 pandemic. Impact Statement-During a global pandemic, understanding the causal effects of risk factors such as age on COVID-19 fatality is an important scientific question. Since randomised controlled trials are typically infeasible or unethical in this context, causal investigations based on observational data-such as the one carried out in this article-will, therefore, be crucial in guiding our understanding of the available data. Causal inference, in particular mediation analysis, can be used to resolve apparent statistical paradoxes; help educate the public and decision-makers alike; avoid unsound comparisons; and answer a range of causal questions pertaining to the pandemic, subject to transparently stated assumptions. Our exposition helps clarify how mediation analysis can be used to investigate direct and indirect effects along different causal paths and thus serves as a stepping stone for future studies of other important risk factors for COVID-19 besides age. This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/.

Entities:  

Keywords:  COVID-19; Causal inference; Simpson's paradox; mediation analysis

Year:  2021        PMID: 35233556      PMCID: PMC8791436          DOI: 10.1109/TAI.2021.3073088

Source DB:  PubMed          Journal:  IEEE Trans Artif Intell        ISSN: 2691-4581


  26 in total

1.  Simpson's Paradox in COVID-19 Case Fatality Rates: A Mediation Analysis of Age-Related Causal Effects.

Authors:  Julius von Kugelgen; Luigi Gresele; Bernhard Scholkopf
Journal:  IEEE Trans Artif Intell       Date:  2021-04-14

2.  Sex bias in graduate admissions: data from berkeley.

Authors:  P J Bickel; E A Hammel; J W O'connell
Journal:  Science       Date:  1975-02-07       Impact factor: 47.728

3.  New machine learning method for image-based diagnosis of COVID-19.

Authors:  Mohamed Abd Elaziz; Khalid M Hosny; Ahmad Salah; Mohamed M Darwish; Songfeng Lu; Ahmed T Sahlol
Journal:  PLoS One       Date:  2020-06-26       Impact factor: 3.240

4.  COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning.

Authors:  Edison Ong; Mei U Wong; Anthony Huffman; Yongqun He
Journal:  Front Immunol       Date:  2020-07-03       Impact factor: 7.561

5.  Rapid triage for COVID-19 using routine clinical data for patients attending hospital: development and prospective validation of an artificial intelligence screening test.

Authors:  Andrew A S Soltan; Samaneh Kouchaki; Tingting Zhu; Dani Kiyasseh; Thomas Taylor; Zaamin B Hussain; Tim Peto; Andrew J Brent; David W Eyre; David A Clifton
Journal:  Lancet Digit Health       Date:  2020-12-11

6.  Social contacts and mixing patterns relevant to the spread of infectious diseases.

Authors:  Joël Mossong; Niel Hens; Mark Jit; Philippe Beutels; Kari Auranen; Rafael Mikolajczyk; Marco Massari; Stefania Salmaso; Gianpaolo Scalia Tomba; Jacco Wallinga; Janneke Heijne; Malgorzata Sadkowska-Todys; Magdalena Rosinska; W John Edmunds
Journal:  PLoS Med       Date:  2008-03-25       Impact factor: 11.069

7.  The many estimates of the COVID-19 case fatality rate.

Authors:  Dimple D Rajgor; Meng Har Lee; Sophia Archuleta; Natasha Bagdasarian; Swee Chye Quek
Journal:  Lancet Infect Dis       Date:  2020-03-27       Impact factor: 25.071

8.  Real estimates of mortality following COVID-19 infection.

Authors:  David Baud; Xiaolong Qi; Karin Nielsen-Saines; Didier Musso; Léo Pomar; Guillaume Favre
Journal:  Lancet Infect Dis       Date:  2020-03-12       Impact factor: 25.071

9.  Age-specific SARS-CoV-2 infection fatality ratio and associated risk factors, Italy, February to April 2020.

Authors:  Piero Poletti; Marcello Tirani; Danilo Cereda; Filippo Trentini; Giorgio Guzzetta; Valentina Marziano; Sabrina Buoro; Simona Riboli; Lucia Crottogini; Raffaella Piccarreta; Alessandra Piatti; Giacomo Grasselli; Alessia Melegaro; Maria Gramegna; Marco Ajelli; Stefano Merler
Journal:  Euro Surveill       Date:  2020-08

10.  Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020.

Authors:  Timothy W Russell; Joel Hellewell; Christopher I Jarvis; Kevin van Zandvoort; Sam Abbott; Ruwan Ratnayake; Stefan Flasche; Rosalind M Eggo; W John Edmunds; Adam J Kucharski
Journal:  Euro Surveill       Date:  2020-03
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  1 in total

1.  Simpson's Paradox in COVID-19 Case Fatality Rates: A Mediation Analysis of Age-Related Causal Effects.

Authors:  Julius von Kugelgen; Luigi Gresele; Bernhard Scholkopf
Journal:  IEEE Trans Artif Intell       Date:  2021-04-14
  1 in total

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