Joan M Montes de Oca1,2, Johnson Dhanasekaran1,2, Andrés Córdoba1,2, Seth B Darling1,2,3, Juan J de Pablo1,2,4. 1. Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States. 2. Advanced Materials for Energy-Water Systems (AMEWS) Energy Frontier Research Center, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States. 3. Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States. 4. Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States.
Abstract
Janus, or two-sided, charged membranes offer promise as ionic current rectifiers. In such systems, pores consisting of two regions of opposite charge can be used to generate a current from a gradient in salinity. The efficiency of nanoscale Janus pores increases dramatically as their diameter becomes smaller. However, little is known about the underlying transport processes, particularly under experimentally accessible conditions. In this work, we examine the molecular basis for rectification in Janus nanopores using an applied electric field. Molecular simulations with explicit water and ions are used to examine the structure and dynamics of all molecular species in aqueous electrolyte solutions. For several macroscopic observables, the results of such simulations are consistent with experimental observations on asymmetric membranes. Our analysis reveals a number of previously unknown features, including a pronounced local reorientation of water molecules in the pores, and a segregation of ionic species that had not been anticipated by previously reported continuum analyses of Janus pores. Using these insights, a model is proposed for ionic current rectification in which electric leakage at the pore entrance controls net transport.
Janus, or two-sided, charged membranes offer promise as ionic current rectifiers. In such systems, pores consisting of two regions of opposite charge can be used to generate a current from a gradient in salinity. The efficiency of nanoscale Janus pores increases dramatically as their diameter becomes smaller. However, little is known about the underlying transport processes, particularly under experimentally accessible conditions. In this work, we examine the molecular basis for rectification in Janus nanopores using an applied electric field. Molecular simulations with explicit water and ions are used to examine the structure and dynamics of all molecular species in aqueous electrolyte solutions. For several macroscopic observables, the results of such simulations are consistent with experimental observations on asymmetric membranes. Our analysis reveals a number of previously unknown features, including a pronounced local reorientation of water molecules in the pores, and a segregation of ionic species that had not been anticipated by previously reported continuum analyses of Janus pores. Using these insights, a model is proposed for ionic current rectification in which electric leakage at the pore entrance controls net transport.
Recent efforts
to understand
the transport of aqueous electrolyte solutions in nanofluidic devices
have led to rapid advances. Some of these can be attributed to the
availability of improved nanofabrication and characterization techniques,
while others have resulted from innovative ideas for energy harvesting
and storage.[1,2] The search for devices that maximize
ionic selectivity and current rectification while minimizing electric
resistance, has led to an array of ingenious designs that are often
characterized by symmetry breaking in the axial direction of the pore,
and by having radial dimensions that are commensurate with the Debye
length of the solution.[3] The so-called
”Janus membranes”, in particular, have garnered considerable
attention due to their superior energetic efficiency and the ample
design-space they offer.[4−7] Janus membranes consist of two distinct regions with
opposite charge. Such membranes exploit the asymmetry created between
the two regions to establish unidirectional transport—a feature
that is of interest for osmotic energy harvesting in situations where
a strong built-in salinity gradient is available (e.g., rivers or
oceans). Past reports related to their performance have sometimes
been accompanied by theoretical interpretations that rely on solution
of the Poisson–Boltzmann (PB) or Poisson–Nernst–Planck
(PNP) equations.[5,6,8−10] As helpful as continuum approaches have been for
the design of Janus pores, it is unclear whether such models are capable
of incorporating all of the relevant physics that arise in nanometer
pores.[11,12] Familiar continuum concepts, such as that
of a dielectric constant, viscosity, and diffusion coefficient must
be revisited in pores, the dimensions of which are comparable to those
of the range of interaction between ionic species.The primary
goal of this work is to understand the molecular origin
of current rectification in Janus membranes. While this question has
been addressed using continuum representations,[5,6] molecular
dynamics simulations of rectification have been scarce.[13−15] In particular, all-atom studies have focused on much smaller nanopores
than those used in experiments, and have not considered the complex
geometries that have been shown to enhance rectification in experiments.
The nanopore model considered here is inspired by recent experimental
reports, and it exhibits the main features of fully functional nanoscale
laboratory devices reported in the literature.[5,6] In
the confinement regime considered here (5–10 nm pore diameter),
the three-dimensional hydrogen-bond (HB) network of the solution is
perturbed but not destroyed. At the same time, electrostatic effects
are not too strong because the smallest geometric scale is much larger
than the Debye length of the 0.05 M electrolyte solutions in our simulations
(1.36 nm). Furthermore, when the concentration is raised to 0.17 M,
that Debye length drops to 0.73 nm. This regime is of interest because
electrostatic interactions play a key role in the underlying physical
processes, but they do not dominate the pairwise interaction energy
between molecules, thereby leading to opportunities for more effective
control of ionic transport.Relying on large-scale molecular
dynamic simulations, we are able
to correctly reproduce many of the experimentally observed membrane
characteristics, including the current–voltage response, the
charge density distribution, and the ionic current rectification (ICR)
factor. Having established the ability of the pore model adopted here
to reproduce key experimental features, we are able to identify the
underlying molecular processes responsible for the observed behavior.Our results suggest that the ICR in Janus membranes is linked to
the ability of the electric field induced inside the membrane to pull
in ions from the reservoir. The asymmetry of the membrane is such
that, when a negative bias is applied, the induced field is not able
to reach the ions in the reservoir, thereby inhibiting ionic transport.
Beyond the asymmetrical ionic distribution inside the pore in response
to an applied bias, we find that water also reacts asymmetrically.
Water dipoles align strongly with the electric field produced by the
charged walls, and also with the externally applied field. Importantly,
the dipole alignment is found to be strongly anisotropic, and to depend
on the local ionic concentration. The insights provided by the simulations
presented here should be of considerable assistance for the improvement
of continuum theories used in the description of electrolytes in nanopores,
and for the design of devices with better ICR characteristics.
Results
and Discussion
We start our discussion with a general characterization
of the
Janus membrane, and then examine the molecular mechanisms that influence
its behavior. Perhaps the most important indicator of performance
is the ionic current that is generated in response to an applied potential,
shown in Table . Note
that a nonlinear response to the applied potential is desirable, and
is the reason for the asymmetrical design of the membrane.[1,4,10,16] A qualitative comparison of our results with those reported in the
literature[5,6,17] reveals that
all the major features observed in experiments on Janus membranes
are reproduced by our molecular model, including the ionic selectivity
for sodium over chloride, and a significant rectification factor,
defined as the ratio between the ionic current of the active state
and the inactive state.
Table 1
Ionic Current Generated
in the Configurations
Considered in This Study, Including Two Concentrations (C) and Three Applied Voltagesa
C [M]
I [nA] activated
I [nA] 0 V
I [nA] inactivated
R (I+/I–)
0.05
3.037
0.022
–0.341
8.91
0.17
6.079
0.048
–1.858
3.27
I enhancement
2.00
5.45
The rectification factor R is calculated
by dividing the current obtained for opposite
external biases. The current enhancement is defined as the ratio between
the current obtained for the two concentrations at the same bias.
The rectification factor R is calculated
by dividing the current obtained for opposite
external biases. The current enhancement is defined as the ratio between
the current obtained for the two concentrations at the same bias.The current rectification factor
is a crucial indicator of the
membrane’s performance. It is also independent of the number
of pores, thereby allowing for direct comparison between our results
and experimental measurements. Our simulations show a rectification
factor of 8.91 at a 0.05 M electrolyte concentration, and one of 3.27
at a 0.17 M concentration, which are consistent with the experimental
value of 7.1 reported by Zhang et al. for a similar
electrolyte concentration.[5] Other studies
on Janus membranes of similar design have reported rectification values
of comparable magnitude.[6,17] In agreement with experiments,
our simulations show a drop in rectification with increasing electrolyte
concentration, as evidenced by the 37% reduction reported in Table when the reservoir
concentration is changed from 0.05 M to 0.17 M.We next consider
the average distribution of ions in the absence
and presence of an applied electric field. The mechanism for ionic
current rectification is generally understood in terms of the ion
accumulation and depletion model initially proposed by Woermann for
conical pores,[18] and later extended to
generic asymmetrical channels.[9,10,16,19,20]Figure left column
shows the ionic concentration profiles along the radial and axial
coordinates for both the active (applied electric field, 0.0333 V/nm)
and inactive versions of the pore (external electric field, −0.0333
V/nm), along with the unbiased equilibrium state. Consistent with
the current understanding of current rectification, we find the inactive
state to exhibit a reduced ionic content with respect to the active
state.[5−7,15] However, in contrast
to the Woermann model of ICR, we find that the pore is never fully
depleted of ions with respect to the bulk. Instead, the concentration
of ions inside the channel is always greater than that in the reservoir.
Figure 1
2D ionic
(Na+Cl) concentration distribution (left column) and the
radially averaged concentration individual sodium and chloride projected
onto x (right column) are shown. The top row is the
equilibrium state at 0 V, the middle row is the activated state, while
the bottom row is the inactivated case. The 2D ion concentration plot
is for a reservoir concentration of 0.05 M. For the higher 0.17 M
case please see the Figure S2 in the Supporting
Information.
2D ionic
(Na+Cl) concentration distribution (left column) and the
radially averaged concentration individual sodium and chloride projected
onto x (right column) are shown. The top row is the
equilibrium state at 0 V, the middle row is the activated state, while
the bottom row is the inactivated case. The 2D ion concentration plot
is for a reservoir concentration of 0.05 M. For the higher 0.17 M
case please see the Figure S2 in the Supporting
Information.In Figure , the
three right-hand column plots show a comparison of the ionic distribution
inside the pore for the two electrolyte solution concentrations considered
here. For clarity, the ionic concentration has been projected only
over the axial coordinate, and split into the anion and cation contributions.
The addition of ions does not translate into a substantial change
in the distribution of ions within the pore. The bulk of the extra
ions is accommodated by the reservoir, raising the total concentration
in that region from about 0.05 M to 0.17 M. This implies that the
screening of the charged walls of the pores is barely altered. Figure compares the sodium
radial concentration profiles in the narrow pore for the two reservoir
concentrations. Both configurations exhibit a similar profile, even
in the presence of very different Debye electric double layer thicknesses.
Figure 2
Radial
concentration distribution of sodium ions in the narrow
channel, obtained by averaging over its middle portion 30 nm < x < 50 nm, as a function of r. The results
for a reservoir salt concentration of 0.05 and 0.17 M are nearly identical,
even though the two Debye lengths, shown using dashed lines, are different.
Radial
concentration distribution of sodium ions in the narrow
channel, obtained by averaging over its middle portion 30 nm < x < 50 nm, as a function of r. The results
for a reservoir salt concentration of 0.05 and 0.17 M are nearly identical,
even though the two Debye lengths, shown using dashed lines, are different.While most of the pore interior is unaffected by
the higher electrolyte
concentration, there is a noticeable uptick in the local ion concentrations
near the sharp edges at the entrance of the narrow pore, which exposes
the wall charge that would have been screened in the equilibrium state.
This leads to a significant drop in ϕ around a value of x of 60 nm for the active state when the cations approach
from the right, and around 20 nm for the cations moving from left
to right in the inactive pore. This can be appreciated in the radially
averaged local electric (ϕ) in Figure . It shows a symmetric ϕ profile when
adjusted for the direction of ionic movement. These results also confirm
that sodium ions are the dominant charge carriers, even if the net
charge of the lumen is positive. To show both cation dominance and
symmetry more clearly, we also present the radially averaged electric
field along the x direction (E) in Figure . The peak location and width are set by the sodium
ions for both nonequilibrium states of the channel.
Figure 3
ϕ averaged over
the radial coordinate, as a function of x. We show
six cases: two reservoir electrolyte concentrations,
in the activated, inactivated, and equilibrium states. Also shown
is an illustration of the direction taken by the dominant current
carrying sodium ions. ϕ has been computed with a reference of
0 at x = 0 and integrating the electric field reported
in Figure .
Figure 4
Radially averaged local electric field along the x direction is shown as a function of the axial coordinate x for the active and the inactivate states. At equilibrium,
the electric field can be barely detected and is not included here.
For reference, the direction of sodium ion transport is also included.
The curves shown here are for the reservoir concentration of 0.05
M. For the 0.17 M result, readers are referred to Figure S3. The electric field is calculated from the electrostatic
force generated on the ions. This is converted to an electric field
via knowledge of the charge. The spatial (r, x) electric field is obtained by averaging over multiple
ion instances crossing that location.
ϕ averaged over
the radial coordinate, as a function of x. We show
six cases: two reservoir electrolyte concentrations,
in the activated, inactivated, and equilibrium states. Also shown
is an illustration of the direction taken by the dominant current
carrying sodium ions. ϕ has been computed with a reference of
0 at x = 0 and integrating the electric field reported
in Figure .Radially averaged local electric field along the x direction is shown as a function of the axial coordinate x for the active and the inactivate states. At equilibrium,
the electric field can be barely detected and is not included here.
For reference, the direction of sodium ion transport is also included.
The curves shown here are for the reservoir concentration of 0.05
M. For the 0.17 M result, readers are referred to Figure S3. The electric field is calculated from the electrostatic
force generated on the ions. This is converted to an electric field
via knowledge of the charge. The spatial (r, x) electric field is obtained by averaging over multiple
ion instances crossing that location.There is no asymmetry in the underlying field; the rectification
is driven by the local concentration changes that arise from the electrical
double layer near the entrance of the narrow section of the pore.
Measuring these local concentrations reveals a 2-fold rise in the
active case and a 5-fold increase in the inactive state when the reservoir
concentration is increased from 0.05 M to 0.17 M. These increases
are directly correlated with the higher ionic current reported in Table . To understand ICR
further, we also consider the possibility that the asymmetry between
the active and inactive modes of the pore might be related to diffusion.
To that end, we report the radially averaged axial sodium velocities
(V) along x in Figure . We once
again recover the symmetry, and the qualitative features of the sodium
velocity are consistent with the electric field reported in Figure , underscoring that
enhanced diffusion does not account for the magnitude of R of nearly 9 reported in Table .
Figure 5
Sodium axial velocity, averaged over the radial coordinate,
as
a function of position x for both the active and
inactive states of the channel. The ions in the reservoir and in contact
with the outer wall are excluded from the average. A complete 2D velocity
snapshot is presented in Figure S4.
Sodium axial velocity, averaged over the radial coordinate,
as
a function of position x for both the active and
inactive states of the channel. The ions in the reservoir and in contact
with the outer wall are excluded from the average. A complete 2D velocity
snapshot is presented in Figure S4.Our proposed electric-field leakage model for ICR
is based on both
the electric force and the concomitant acceleration that starts well
before the ion-depleted regions of the small section of the pore.
In the active pore, ions are brought to the entrance from as far as
5 nm away, in the reservoir, by the electric field generated by the
pore when voltage is applied. Similarly, in the inactive pore, ions
are accelerated from remote positions but, this time, in the interior
of the positively charged chamber, where the sodium concentration
is much lower (even lower than in the bulk). Thus, the impact of ionic
concentration on current is through an increase in the probability
of crossing a barrier, and not necessarily a change in the barrier
height.To better illustrate the dynamics of the Janus membrane
operation
we show in Figure the path taken by a sodium ion as it traverses the nanopore. We
can observe a Brownian motion mechanism, aided by the applied electric
field, through which the sodium ion approaches the membrane entrance.
There, it spends a considerable amount of time before it crosses over
to the negatively charged section of the pore. Once in that section,
it is rapidly shuttled to the wall and dragged toward the wider section,
where it is pushed to the center of the channel.
Figure 6
Representative trajectory
of a sodium ion, the dominant charge
carrier, across the membrane. It begins with classical Brownian motion
in the reservoir. As it enters the narrow pore, the ion is driven
to the wall and dragged along its surface. As the ion approaches the
wider portion of the pore, it is forced to the center of the channel.
The return to Brownian motion on the other side of the pore is not
shown for conciseness.
Representative trajectory
of a sodium ion, the dominant charge
carrier, across the membrane. It begins with classical Brownian motion
in the reservoir. As it enters the narrow pore, the ion is driven
to the wall and dragged along its surface. As the ion approaches the
wider portion of the pore, it is forced to the center of the channel.
The return to Brownian motion on the other side of the pore is not
shown for conciseness.We now turn our focus
toward the explicit role of water in a system
with dimensions comparable to those used in laboratory experiments.
It is well-known that water behavior deviates from that of the bulk
under extreme confinement conditions. In the context of nanofluidics,
this level of confinement is often understood to occur below one nanometer,
where the size of the system is comparable to molecular dimensions.[11,21,22] However, the size of the pore
considered here is 1 order of magnitude above that scale, and therefore
in a regime that has been assumed in the past to approach the continuum
limit. In that regime, classical theories are expected to be valid,
but have been less explored by MD simulations.[12] In what follows, we only highlight some of the most salient
features of the structure and dynamics of water in our simulated Janus
membrane.One of the main reasons that water behavior is difficult
to predict
is that molecular interactions propagate well beyond the size of a
single molecule through a complex hydrogen-bonding network. Furthermore,
many of the unusual phenomena observed in nanofluidic devices occur
in pore sizes that are too small to accommodate a fully three-dimensional
HB network.[23−25] Our results indicate that the number of hydrogen
bonds per molecule inside the pore is similar to the value computed
in the reservoir.The average dipole moment under negative and
positive applied potentials
is shown in Figure . One can appreciate a clear tendency for water molecules to align,
with both the external electric field and the electric field emanating
from the charged walls. The anisotropic nature of the order spans
a length that is many times larger than the size of a water molecule.
There is some precedent for the dipole behavior found here in the
literature.[26−29] Past studies also proposed a reduction of the dielectric constant
in the direction perpendicular to the confinement, and an increase
in the parallel direction. The strength of the electrostatic interactions
and, therefore, the dynamics of ionic motion, could be significantly
affected by the distinctive orientation of water at the entrance of
the smaller section of the pore.[30] Importantly,
although the dipole moment is altered in these regions, the average
number of HB per molecule remains at 3.47, which almost exactly matches
the average all across the system, including the reservoir, of 3.44.
Figure 7
A 2D slice
showing the dipole moment of water when the reservoir
concentration is 0.05 M for both the active (a) and inactive (b) pore.
There is strong alignment next to the charged wall in both cases,
but the peak along x occurs at the respective depletion
regions. Results for the 0.17 M case are shown in Figure S5.
A 2D slice
showing the dipole moment of water when the reservoir
concentration is 0.05 M for both the active (a) and inactive (b) pore.
There is strong alignment next to the charged wall in both cases,
but the peak along x occurs at the respective depletion
regions. Results for the 0.17 M case are shown in Figure S5.The results in Figure allow us to make
two additional, important observations.
First, as seen in panel b, the orientation of water molecules starts
inside the pore, but extends well into the reservoir, for about 5
nm, highlighting the need for a reservoir when this kind of system
is modeled either by molecular simulations or continuum approaches.[31] Second, the zones displaying the strongest water
alignment in Figure , naturally correlate with the regions of augmented electric field
displayed in Figure , which are also the depletion regions seen in Figure .For completeness, in Figure , we show how the water velocity
developed in the radial direction
is related to the sodium velocity that drives it. From this figure,
one can appreciate a clear correlation between the two velocities.
In fact, away from the depletion region, water velocity exactly matches
the sodium velocity. Figure b shows how the proportionality is maintained even at different
electrolyte concentrations and applied biases, for the region (30
nm < x < 50 nm). These data are consistent
with previous reports for pores of smaller sizes, which have noted
the concurrence of ionic current and the underlying electro-osmotic
flow.[15,32,33] This behavior
can be explained by the considerable influence that one of the ionic
species (sodium in our case) has over the transport across the channel.
Figure 8
Water
velocity averaged along the radial direction and projection
onto the axis of the pore, along with the sodium result for reference,
as a function of x in panel a. The full lines are
sodium velocities: blue lines are active 0.05 and 0.017 M (darker),
the red lines are inactive 0.05 M and 0.17 M (darker). The dashed
lines are water velocities for inactive (pink, both concentrations)
and light blue for active (both concentrations) pores. For ease of
comparison with Figure , the velocities computed between 30 nm < x <
50 nm for both sodium and water are shown in panel b. There is no
lag in the sodium motion relative to the underlying solvent within
the narrow pore. The complete 2D water velocity information for a
reservoir concentration of 0.05 M is given in Figure S6.
Water
velocity averaged along the radial direction and projection
onto the axis of the pore, along with the sodium result for reference,
as a function of x in panel a. The full lines are
sodium velocities: blue lines are active 0.05 and 0.017 M (darker),
the red lines are inactive 0.05 M and 0.17 M (darker). The dashed
lines are water velocities for inactive (pink, both concentrations)
and light blue for active (both concentrations) pores. For ease of
comparison with Figure , the velocities computed between 30 nm < x <
50 nm for both sodium and water are shown in panel b. There is no
lag in the sodium motion relative to the underlying solvent within
the narrow pore. The complete 2D water velocity information for a
reservoir concentration of 0.05 M is given in Figure S6.Beyond the dynamics (via
coupling of sodium and solvent velocity)
and complex electrostatic effects (e.g., the nontrivial dipole alignment),
there is another way in which the often overlooked presence of water
is manifest in all the interactions taking place within the system. Figure shows the immediate
vicinity of the charged wall. The sodium ions belonging to the so-called
“stern layer” or “stagnant layer” are
not in direct contact with the charged particles of the walls of the
pore, but instead are located precisely between the first and the
second layers of the water hydrating the surface. In addition to the
“static” ion distribution, the nonzero water velocity
that arises from the surface roughness drags the ions in the stern
layer along with it, thus impacting the dynamics of the system. The
fact that water mediates interfacial interactions certainly introduces
more complexity to the already intricate structure and dynamics of
the electrical double layer.
Figure 9
Water mediating the contact between the ions
and the walls of the
pore. The radial concentration profile for water and ions in the inset
reveals that sodium ions sit precisely between the first and the second
layer of the water’s oxygen atoms. These results are for the
0.05 M reservoir and active state simulation.
Water mediating the contact between the ions
and the walls of the
pore. The radial concentration profile for water and ions in the inset
reveals that sodium ions sit precisely between the first and the second
layer of the water’s oxygen atoms. These results are for the
0.05 M reservoir and active state simulation.
Conclusions
The results of equilibrium and nonequilibrium molecular dynamics
simulations of a Janus pore in the active and inactive states are
in agreement with a number of experimentally determined observables
from asymmetric membranes, serving to underscore the validity of the
models adopted here.The electric current and rectification
reported in this work can
be explained in terms of an electric-field leakage model. The “leaking”
electric field arises from the applied electric field, and rearranges
ions to expose wall charges. The crossing of these depletion regions
at the entrance of the narrow pore, along the direction of the dominant
(current carrying) sodium ions, is proposed to occur through the induced
electric field. This electric field leaks into the reservoir for the
active case, and pulls in the cations to increase conduction. In the
inactive case, the leakage of the electric field does not reach into
the reservoir, and instead ends in the positively charged chamber,
where the sodium concentration is very small, resulting in a low output.
The addition of electrolytes to the bulk (for both directions of applied
electric field) should increase sodium availability, thereby enhancing
electric throughput. More specifically, the enhancement depends on
the increase of the local concentration in the narrow pore entrance,
which depends on the spatial evolution of the double layer. Hence,
to increase ICR, measures could be taken to limit sodium concentration
at the narrow/wide pore junction (at x = 10 nm) such
as extending the wider section of the membrane, or increasing its
positive wall charge density.Our comprehensive characterization
of the water structure and its
influence over the membranes’ performance indicates that water
dipoles align not only with the externally applied electric field,
but also with the field that originates from the charged walls. More
importantly, water orientation is found to be highly anisotropic,
with a larger average dipole moment that coincides with the ionic
depletion regions. Water molecules not only align their dipoles toward
the charged walls, but also in a way in which dipole-induced interactions
dominate the physics at the surface of the pore. Ions, in contrast,
occupy the space between the first and the second layers of water,
instead of being in direct contact with the charged particles of the
walls.The results of this work confirm that ICR is not limited
to pore
radii below the Debye length. We find that the radial ion distribution
in the central portion of the membrane is not too sensitive to the
electrolyte concentration in the reservoir.
Model
and Methods
In the experiments by Zhang et al.,[5] the active part of the Janus pore
consisted of
two contiguous cylindrical sections. The narrow section had a surface
charge of −0.08 C/m2, while the wider section had
a surface charge of +0.24 C/m2. We retained what was designed
in our simulations but rescaled the length of the pore to 10 nm at
the wider section and 40 nm at the narrower part as to preserve the
original length and diameter ratio between the oppositely charged
sections and still be numerically feasible. In our model a “reservoir”
with dimensions 20 nm × 28.5 nm × 28.5 nm is connected to
both sides of the pore. A schematic representation of the system is
shown in Figure . This Janus membrane is operated with a NaCl 1:1 electrolyte solution.
The molecular simulations were conducted under the assumption that
the transport properties in the real membrane consist of the sum of
the transport of many noninteracting independent pores working in
parallel. Under this supposition, the behavior of the membrane is
expected to be recovered from the simulation of a single pore. This
is justified by the negligible change in conductance for different
pore arrangement densities at ionic concentrations similar to ours
in the experiments by Zhu et al.[17]
Figure 10
A 2D slice of the model Janus membrane used in our molecular
dynamics
simulations. The gray spheres are the fixed walls; pink represents
water molecules, blue is sodium ions, and green is chloride ions.
Only the horizontal walls are charged.
A 2D slice of the model Janus membrane used in our molecular
dynamics
simulations. The gray spheres are the fixed walls; pink represents
water molecules, blue is sodium ions, and green is chloride ions.
Only the horizontal walls are charged.For simulations, the nanopore was carved from an FCC structure
with a lattice constant of 0.407 nm. The particles of the walls are
modeled with Lennard-Jones parameters σ = 0.32 nm and ε
= 0.65 kJ/mol. The small section of the channel is composed of 41 691
particles, each carrying a charge of Q = −0.01504
au to achieve the desired surface charge. Similarly, the large section
of the channel contains 17 921 particles, each carrying a charge
of 0.04464 in atomic units. The channel is embedded in a box with
dimensions provided in Figure , and is filled with approximately 705 000 water molecules.
Using pre-equilibrated NaCl solutions, two simulations are performed,
with 2234 and 4393 ions, in an overall electroneutral simulation box.
For the electrolyte solution, we use the Dang parameters[34] for the ions and SPC/E[35] for the water.All the MD simulations were performed using
GROMACS[36] in the NVT ensemble with periodic
boundary conditions.
Long-range electrostatic forces were calculated using the particle-mesh
Ewald method, with a grid density of 0.16 nm and a real space cutoff
at 1.2 nm. The temperature of all simulations was kept constant at
300 K using a velocity-rescaling algorithm coupled every 0.1 ps with
no center of mass motion removal. The positions of all the particles
of the walls were restrained using harmonic potentials of 9000 kJ·mol–1·nm–2 over the entire course
of the simulations. A uniform electrostatic field of (±)0.0333
V/nm, corresponding to active and inactive, states, respectively,
was applied in the axial direction to produce the ionic current.The entire system was first equilibrated without external bias
for a period of 30 ns. After that, a production simulation was run
for another 30 ns to generate the reference equilibrium state of the
pore. Starting from the equilibrium state, intermediate simulations
were conducted at each different potential for a period of 30 ns until
steady state was reached. The simulations were continued for an additional
30 ns period for the final data collection. The steady state of the
final runs was determined by inspecting the ionic current evolution
over the course of the simulations (see Figure S1 ).
Authors: Wen-Jie Lan; Martin A Edwards; Long Luo; Rukshan T Perera; Xiaojian Wu; Charles R Martin; Henry S White Journal: Acc Chem Res Date: 2016-09-30 Impact factor: 22.384