Literature DB >> 35226313

PCR Methods for the Generation of Catalytic ssDNA.

Deni Szokoli1,2, Kristian K Le Vay1,2, Hannes Mutschler3,4.   

Abstract

The ability to produce single-stranded DNA on a preparative scale from low amounts of starting templates is necessary for most research involving deoxyribozymes, but is particularly important for performing in vitro selections. While the production of single-stranded RNA is straightforward by means of in vitro transcription, the enzymatic production of single-stranded DNA (ssDNA) on a preparative scale is often difficult. Nevertheless, several methods for the production of ssDNA have been published over the years. Here, we present two PCR methods that we find to be particularly effective, fast, and affordable, which we have adapted for our own needs.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  10–23 DNAzyme; DNAzyme preparation; Polymerase chain reaction (PCR); ssDNA library recovery; ssDNA production

Mesh:

Substances:

Year:  2022        PMID: 35226313     DOI: 10.1007/978-1-0716-2047-2_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

Review 1.  Synthetic DNA Synthesis and Assembly: Putting the Synthetic in Synthetic Biology.

Authors:  Randall A Hughes; Andrew D Ellington
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-01-03       Impact factor: 10.005

2.  Production of single-stranded DNA templates by exonuclease digestion following the polymerase chain reaction.

Authors:  R G Higuchi; H Ochman
Journal:  Nucleic Acids Res       Date:  1989-07-25       Impact factor: 16.971

3.  Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus.

Authors:  U B Gyllensten; H A Erlich
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

4.  PCR product with strands of unequal length.

Authors:  K P Williams; D P Bartel
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

5.  Rapid in vitro production of single-stranded DNA.

Authors:  Dionis Minev; Richard Guerra; Jocelyn Y Kishi; Cory Smith; Elisha Krieg; Khaled Said; Amanda Hornick; Hiroshi M Sasaki; Gabriel Filsinger; Brian J Beliveau; Peng Yin; George M Church; William M Shih
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

  5 in total

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