| Literature DB >> 35225407 |
Christina D Mack1, Erin B Wasserman1, Christopher J Hostler2,3,4, Gary Solomon5, Deverick J Anderson2,4, Patti Walton6, Kalyani Hawaldar1, Emily Myers5, Michele Best7, Daniel Eichner8, Thom Mayer9,10, Allen Sills5.
Abstract
BACKGROUND: Rapid COVID-19 testing platforms can identify infected individuals at the point of care (POC), allowing immediate isolation of infected individuals and reducing the risk of transmission. While lab-based nucleic acid amplification testing (NAAT) is often considered the gold standard to detect SARS-CoV-2 in the community, results typically take 2-7 days to return, rendering POC testing a critical diagnostic tool for infection control. The National Football League (NFL) and NFL Players Association deployed a new POC testing strategy using a newly available reverse transcriptase polymerase chain reaction (RT-PCR) rapid test during the 2020 season, and evaluated diagnostic effectiveness compared to other available devices using real-world population surveillance data.Entities:
Keywords: COVID-19; SARS-CoV-2; agile analytics; diagnostic concordance; diagnostics; emergency use authorization; infectious disease surveillance; point-of-care testing; real-world data; real-world evidence
Mesh:
Year: 2022 PMID: 35225407 PMCID: PMC9088538 DOI: 10.1002/pds.5424
Source DB: PubMed Journal: Pharmacoepidemiol Drug Saf ISSN: 1053-8569 Impact factor: 2.890
FIGURE 1COVID‐19 incidence and RT‐PCR POC testing by week in the NFL (November 05, 2020–January 02, 2021). NFL, National Football League; POC, point of care; RT‐PCR, reverse transcriptase polymerase chain reaction
Same‐day RT‐PCR POC and NAAT Concordance , (November 05, 2020–January 02, 2021)
| Positive NAAT | Negative NAAT | Total | |
|---|---|---|---|
|
|
|
| |
| Positive RT‐PCR POC | 190 (93.1% [89.7–96.6%]) | 18 (0.4% [0.2–0.6%]) | 208 (4.2%) |
| Negative RT‐PCR POC | 14 (6.9% [3.4–10.3%]) | 4767 (99.6% [99.5–99.8%]) | 4781 (95.8%) |
Abbreviations: NAAT, nucleic acid amplification testing; POC, point of care; RT‐PCR, reverse transcriptase polymerase chain reaction.
Concordance [95% Confidence Interval] indicates agreement between RT‐PCR POC and NAAT. It does not reflect final case status.
These data are restricted to same‐day tests; an individual may have had multiple same‐day test pairs.
FIGURE 2Target 1 (ORF1) Ct values for same‐day NAAT (Roche cobas) by RT‐PCR POC test result against adjudicated case status (November 05, 2020–January 02, 2021). Ct, cycle threshold; Max, maximum; Min, minimum; NAAT, nucleic acid amplification testing; ORF1, cycle threshold values for Target 1; POC, point‐of‐care; RT‐PCR, reverse transcriptase polymerase chain reaction; SD, standard deviation
Sensitivity analyses: comparison of RT‐PCR POC and NAAT results for specific subpopulations
| Population | % Positive concordance [95% CI](# positive RT‐PCR POC‐positive NAAT pairs/# positive NAAT tests) | % Negative concordance [95% CI](# negative RT‐PCR POC‐negative NAAT pairs/# negative NAAT tests) | False negatives [95% CI] | False positives [95% CI] |
|---|---|---|---|---|
| entire population | 93.1% [89.7–96.6%] | 99.6% [99.5–99.8%] | 0.2% [0.1–0.3%] | 2.9% [0.6–5.2%] |
| (n = 4989) | (190/204) | (4767/4785) | (10/4781) | (6/208) |
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| ||||
|
Symptomatic at first positive ( |
97.3% [93.6–100.0%] (72/74) | 33.3% [0.0–86.7%] (1/3) |
66.7% [13.3–100.0%] (2/3) | N/A |
|
Presymptomatic/asymptomatic at first positive ( |
90.1% [84.3–95.9%] (91/101) |
92.9% [85.1–100.0%] (39/42) |
16.3% [6.0–26.7%] (8/49) | N/A |
|
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|
Pilot group ( |
100.0% [N/A] (8/8) |
100.0% [N/A] (843/843) |
0.0% [N/A] (0/843) |
0.0% [N/A] (0/8) |
|
Non‐pilot group testing performed for‐cause ( |
91.4% [87.5–95.3%] (180/197) |
99.5% [99.3–99.8%] (3923/3941) |
0.3% [0.1–0.4%] (10/3940) |
3.0% [0.6–5.4%] (6/198) |
|
| ||||
|
Tier 1 & 2 Only (e.g., in daily NAAT testing protocol) ( |
91.3% [87.3–95.2%] (178/195) |
99.6% [99.5–99.8%] (4536/4553) |
0.2% [0.1–0.4%] (10/4553) |
3.1% [0.7–5.0%] (6/195) |
Abbreviations: NAAT, nucleic acid amplification testing; POC, point of care; RT‐PCR, reverse transcriptase polymerase chain reaction.
See Figure S1.
Based on adjudicated case status.
The case adjudication algorithm classified any symptomatic individual testing positive on a NAAT platform as a confirmed case of COVID‐19 (noting that individuals who had recently recovered from COVID‐19 were not in the testing pool). Therefore, no positive NAAT results for symptomatic individuals were considered false positives.
Due to differential missingness in symptom information for cases compared to non‐cases, rate of false positives not calculated.
Pilot group testing includes RT‐PCR POC tests done alongside NAAT (same day) across five select Clubs from November 9 to November 18, 2020.
Non‐pilot group testing includes RT‐PCR POC tests performed for‐cause when RT‐PCR POC was in operational use after the pilot phase ended on November 18, 2021 (all 32 Clubs) or use at any time in the study period among the non‐pilot Clubs.
Tier 1 & 2 only included RT‐PCR POC tests for‐cause (n = 3897) and daily during the pilot study (n = 851); these represent individuals likely tested earlier in infection (i.e., likely with lower viral load).