Literature DB >> 35218543

Super-Resolution Radial Fluctuations (SRRF) Microscopy.

Jayme Salsman1, Graham Dellaire2,3.   

Abstract

Super-resolution Radial Fluctuations (SRRF) imaging is a computational approach to fixed and live-cell super-resolution microscopy that is highly accessible to life science researchers since it uses common microscopes and open-source software plugins for ImageJ. This allows users to generate super-resolution images using the same equipment, fluorophores, fluorescent proteins and methods they routinely employ for their studies without specialized sample preparations or reagents. Here, we discuss a step-by-step workflow for acquiring and analyzing images using the NanoJ-SRRF software developed by the Ricardo Henriques group, with a focus on imaging chromatin. Increased accessibility of affordable super-resolution imaging techniques is an important step in extending the reach of this revolution in cellular imaging to a greater number of laboratories.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Chromatin; EMCCD; SRRF; Super-resolution; sCMOS

Mesh:

Substances:

Year:  2022        PMID: 35218543     DOI: 10.1007/978-1-0716-2051-9_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Correlative light and electron spectroscopic imaging of chromatin in situ.

Authors:  Graham Dellaire; Rozalia Nisman; David P Bazett-Jones
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

2.  Blinking fluorophores: what do they tell us about protein dynamics?

Authors:  C R Bagshaw; D Cherny
Journal:  Biochem Soc Trans       Date:  2006-11       Impact factor: 5.407

Review 3.  How to switch a fluorophore: from undesired blinking to controlled photoswitching.

Authors:  Sebastian van de Linde; Markus Sauer
Journal:  Chem Soc Rev       Date:  2014-02-21       Impact factor: 54.564

4.  Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI).

Authors:  T Dertinger; R Colyer; G Iyer; S Weiss; J Enderlein
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

Review 5.  Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing?

Authors:  Atanu Acharya; Alexey M Bogdanov; Bella L Grigorenko; Ksenia B Bravaya; Alexander V Nemukhin; Konstantin A Lukyanov; Anna I Krylov
Journal:  Chem Rev       Date:  2016-10-18       Impact factor: 60.622

Review 6.  Super-Resolution Fluorescence Microscopy for Single Cell Imaging.

Authors:  Han Feng; Xiaobo Wang; Zhiwei Xu; Xiaoju Zhang; Yongju Gao
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

Review 7.  Soft X-ray tomography: virtual sculptures from cell cultures.

Authors:  Jessica Guo; Carolyn A Larabell
Journal:  Curr Opin Struct Biol       Date:  2019-09-06       Impact factor: 6.809

8.  SRRF: Universal live-cell super-resolution microscopy.

Authors:  Siân Culley; Kalina L Tosheva; Pedro Matos Pereira; Ricardo Henriques
Journal:  Int J Biochem Cell Biol       Date:  2018-05-28       Impact factor: 5.085

9.  Fast live-cell conventional fluorophore nanoscopy with ImageJ through super-resolution radial fluctuations.

Authors:  Nils Gustafsson; Siân Culley; George Ashdown; Dylan M Owen; Pedro Matos Pereira; Ricardo Henriques
Journal:  Nat Commun       Date:  2016-08-12       Impact factor: 14.919

Review 10.  NanoJ: a high-performance open-source super-resolution microscopy toolbox.

Authors:  Romain F Laine; Kalina L Tosheva; Nils Gustafsson; Robert D M Gray; Pedro Almada; David Albrecht; Gabriel T Risa; Fredrik Hurtig; Ann-Christin Lindås; Buzz Baum; Jason Mercer; Christophe Leterrier; Pedro M Pereira; Siân Culley; Ricardo Henriques
Journal:  J Phys D Appl Phys       Date:  2019-02-18       Impact factor: 3.207

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