Literature DB >> 35218433

Shewanella jiangmenensis sp. nov., isolated from aquaculture water.

Yingli Song1,2, Anzhang Li2, Shuaishuai Xu2, Mingxia Zhang2, Qing Yao3, Lian Ma4,5, Honghui Zhu6,7.   

Abstract

A Gram-stain-negative and facultatively anaerobic bacterial strain designated as JM162201T was isolated from aquaculture water for farming Pacific white shrimp (Litopenaeus vannamei). The genome size of strain JM162201T was 4,436,316 bp, and the genomic DNA G + C content was 55.0%. Phylogenetic analysis based on 16S rRNA gene sequences and genomes showed that strain JM162201T belonged to the genus Shewanella and was closely related to Shewanella litorisediminis SMK1-12T (97.1%), Shewanella khirikhana TH2012T (97.0%), and Shewanella amazonensis SB2BT (96.0%). The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain JM162201T and three reference type strains were below the recognized thresholds of 95.0-96.0% (for ANI) and 70.0% (for dDDH) for species delineation. Growth occurred at 10-40 °C (optimum, 30 °C), at pH 4.0-10.0 (optimum, 7.0-8.0), and in 0-6.0% NaCl (w/v, optimum, 0-0.1%). The major cellular fatty acids of strain JM162201T were summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C17:1 ω8c, iso-C15:0, C16:0, and C15:0. The predominant quinones were MK7, Q-7, and Q-8. The major polar lipids were phosphatidylethanolamine (PE) and phosphatidylglycerol (PG). Based on the polyphasic taxonomical analyses, strain JM162201T represents a novel species of the genus Shewanella, for which the name Shewanella jiangmenensis sp. nov. is proposed, with the type strain JM162201T (= GDMCC 1.2006T = KCTC 82340T).
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Aquaculture water; Genomic analysis; Genotypes and phenotypes; Polyphasic taxonomy; Shewanella jiangmenensis

Mesh:

Substances:

Year:  2022        PMID: 35218433     DOI: 10.1007/s00203-022-02761-9

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  24 in total

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Journal:  Int J Syst Evol Microbiol       Date:  2008-08       Impact factor: 2.747

7.  Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water.

Authors:  Elena P Ivanova; Nataliya M Gorshkova; John P Bowman; Anatoli M Lysenko; Natalia V Zhukova; Alexander F Sergeev; Valery V Mikhailov; Dan V Nicolau
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

8.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.

Authors:  Alexander F Auch; Mathias von Jan; Hans-Peter Klenk; Markus Göker
Journal:  Stand Genomic Sci       Date:  2010-01-28

9.  CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.

Authors:  Baofeng Jia; Amogelang R Raphenya; Brian Alcock; Nicholas Waglechner; Peiyao Guo; Kara K Tsang; Briony A Lago; Biren M Dave; Sheldon Pereira; Arjun N Sharma; Sachin Doshi; Mélanie Courtot; Raymond Lo; Laura E Williams; Jonathan G Frye; Tariq Elsayegh; Daim Sardar; Erin L Westman; Andrew C Pawlowski; Timothy A Johnson; Fiona S L Brinkman; Gerard D Wright; Andrew G McArthur
Journal:  Nucleic Acids Res       Date:  2016-10-26       Impact factor: 16.971

10.  Positive regulation of the Shewanella oneidensis OmpS38, a major porin facilitating anaerobic respiration, by Crp and Fur.

Authors:  Tong Gao; Lili Ju; Jianhua Yin; Haichun Gao
Journal:  Sci Rep       Date:  2015-09-18       Impact factor: 4.379

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