Literature DB >> 35210618

Deubiquitinase-targeting chimeras for targeted protein stabilization.

Nathaniel J Henning1,2,3, Lydia Boike1,2,3, Jessica N Spradlin1,2,3, Carl C Ward2,3,4, Gang Liu2,5, Erika Zhang1,2,3, Bridget P Belcher1,2,3, Scott M Brittain2,5, Matthew J Hesse2,6, Dustin Dovala2,6, Lynn M McGregor2,5, Rachel Valdez Misiolek5, Lindsey W Plasschaert5, David J Rowlands5, Feng Wang2,6, Andreas O Frank2,6, Daniel Fuller2,5, Abigail R Estes1,2,3, Katelyn L Randal1,2,3, Anoohya Panidapu1,2,3, Jeffrey M McKenna2,5, John A Tallarico2,5, Markus Schirle2,5, Daniel K Nomura7,8,9,10,11.   

Abstract

Many diseases are driven by proteins that are aberrantly ubiquitinated and degraded. These diseases would be therapeutically benefited by targeted protein stabilization (TPS). Here we present deubiquitinase-targeting chimeras (DUBTACs), heterobifunctional small molecules consisting of a deubiquitinase recruiter linked to a protein-targeting ligand, to stabilize the levels of specific proteins degraded in a ubiquitin-dependent manner. Using chemoproteomic approaches, we discovered the covalent ligand EN523 that targets a non-catalytic allosteric cysteine C23 in the K48-ubiquitin-specific deubiquitinase OTUB1. We showed that a DUBTAC consisting of our EN523 OTUB1 recruiter linked to lumacaftor, a drug used to treat cystic fibrosis that binds ΔF508-cystic fibrosis transmembrane conductance regulator (CFTR), robustly stabilized ΔF508-CFTR protein levels, leading to improved chloride channel conductance in human cystic fibrosis bronchial epithelial cells. We also demonstrated stabilization of the tumor suppressor kinase WEE1 in hepatoma cells. Our study showcases covalent chemoproteomic approaches to develop new induced proximity-based therapeutic modalities and introduces the DUBTAC platform for TPS.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35210618     DOI: 10.1038/s41589-022-00971-2

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   16.174


  53 in total

Review 1.  Transforming targeted cancer therapy with PROTACs: A forward-looking perspective.

Authors:  William Farnaby; Manfred Koegl; Darryl B McConnell; Alessio Ciulli
Journal:  Curr Opin Pharmacol       Date:  2021-03-30       Impact factor: 5.547

2.  Reimagining Druggability Using Chemoproteomic Platforms.

Authors:  Jessica N Spradlin; Erika Zhang; Daniel K Nomura
Journal:  Acc Chem Res       Date:  2021-03-18       Impact factor: 22.384

3.  Phosphorylation-Inducing Chimeric Small Molecules.

Authors:  Sachini U Siriwardena; Dhanushka N P Munkanatta Godage; Veronika M Shoba; Sophia Lai; Mengchao Shi; Peng Wu; Santosh K Chaudhary; Stuart L Schreiber; Amit Choudhary
Journal:  J Am Chem Soc       Date:  2020-08-04       Impact factor: 15.419

4.  Heterobifunctional Molecules Induce Dephosphorylation of Kinases-A Proof of Concept Study.

Authors:  Sayumi Yamazoe; Jeffrey Tom; Yue Fu; Wenqiong Wu; Liang Zeng; Changlei Sun; Qi Liu; Jie Lin; Kui Lin; Wayne J Fairbrother; Steven T Staben
Journal:  J Med Chem       Date:  2020-01-14       Impact factor: 7.446

5.  Targeted protein degradation: expanding the toolbox.

Authors:  Matthieu Schapira; Matthew F Calabrese; Alex N Bullock; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2019-10-30       Impact factor: 84.694

6.  AUTACs: Cargo-Specific Degraders Using Selective Autophagy.

Authors:  Daiki Takahashi; Jun Moriyama; Tomoe Nakamura; Erika Miki; Eriko Takahashi; Ayami Sato; Takaaki Akaike; Kaori Itto-Nakama; Hirokazu Arimoto
Journal:  Mol Cell       Date:  2019-10-09       Impact factor: 17.970

Review 7.  Proteolysis-Targeting Chimeras as Therapeutics and Tools for Biological Discovery.

Authors:  George M Burslem; Craig M Crews
Journal:  Cell       Date:  2020-01-16       Impact factor: 41.582

Review 8.  Identifying druggable disease-modifying gene products.

Authors:  Scott J Dixon; Brent R Stockwell
Journal:  Curr Opin Chem Biol       Date:  2009-09-07       Impact factor: 8.822

9.  Lysosome-targeting chimaeras for degradation of extracellular proteins.

Authors:  Steven M Banik; Kayvon Pedram; Simon Wisnovsky; Green Ahn; Nicholas M Riley; Carolyn R Bertozzi
Journal:  Nature       Date:  2020-07-29       Impact factor: 49.962

Review 10.  PROTACs: An Emerging Therapeutic Modality in Precision Medicine.

Authors:  Dhanusha A Nalawansha; Craig M Crews
Journal:  Cell Chem Biol       Date:  2020-08-13       Impact factor: 9.039

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  7 in total

Review 1.  One Size Does Not Fit All: The Past, Present and Future of Cystic Fibrosis Causal Therapies.

Authors:  Marjolein M Ensinck; Marianne S Carlon
Journal:  Cells       Date:  2022-06-08       Impact factor: 7.666

2.  DUB be good to me.

Authors:  Xingui Liu; Alessio Ciulli
Journal:  Nat Chem Biol       Date:  2022-04       Impact factor: 16.174

3.  Ligandability of E3 Ligases for Targeted Protein Degradation Applications.

Authors:  Bridget P Belcher; Carl C Ward; Daniel K Nomura
Journal:  Biochemistry       Date:  2021-09-02       Impact factor: 3.162

Review 4.  Proteostasis Regulators in Cystic Fibrosis: Current Development and Future Perspectives.

Authors:  Irene Brusa; Elvira Sondo; Federico Falchi; Nicoletta Pedemonte; Marinella Roberti; Andrea Cavalli
Journal:  J Med Chem       Date:  2022-04-04       Impact factor: 8.039

Review 5.  Key Considerations in Targeted Protein Degradation Drug Discovery and Development.

Authors:  Liena Qin; Han Dai; Junfeng Wang
Journal:  Front Chem       Date:  2022-08-01       Impact factor: 5.545

Review 6.  Advances in covalent drug discovery.

Authors:  Lydia Boike; Nathaniel J Henning; Daniel K Nomura
Journal:  Nat Rev Drug Discov       Date:  2022-08-25       Impact factor: 112.288

Review 7.  The emerging roles of deubiquitinases in plant proteostasis.

Authors:  Michael J Skelly
Journal:  Essays Biochem       Date:  2022-08-05       Impact factor: 7.258

  7 in total

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