| Literature DB >> 35207763 |
Ahmad Naeem1, Tayyaba Anees2, Rizwan Ali Naqvi3, Woong-Kee Loh4.
Abstract
Brain tumors are a deadly disease with a high mortality rate. Early diagnosis of brain tumors improves treatment, which results in a better survival rate for patients. Artificial intelligence (AI) has recently emerged as an assistive technology for the early diagnosis of tumors, and AI is the primary focus of researchers in the diagnosis of brain tumors. This study provides an overview of recent research on the diagnosis of brain tumors using federated and deep learning methods. The primary objective is to explore the performance of deep and federated learning methods and evaluate their accuracy in the diagnosis process. A systematic literature review is provided, discussing the open issues and challenges, which are likely to guide future researchers working in the field of brain tumor diagnosis.Entities:
Keywords: brain tumor; deep learning; federated learning; health care; magnetic resonance imaging; tumor detection; tumor diagnosis
Year: 2022 PMID: 35207763 PMCID: PMC8880689 DOI: 10.3390/jpm12020275
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Figure 1Key Steps for SLR.
Research questions.
| Statement of Research Question | Motivation | |
|---|---|---|
| Q1 | What are the best available methods for the detection of a brain tumor? | This question investigates a deep and federated-learning-based method for the diagnosis of brain tumors. |
| Q2 | What are the metrics used to determine the performance of different methods used for brain tumor diagnosis? | This question determines the research efficacy of deep learning and federated-learning-based methods for brain tumor diagnosis. |
| Q3 | What datasets are used in recent research for the diagnosis of brain tumors? | This question identifies the available benchmark, public, and non-public datasets for brain tumor diagnosis. |
| Q4 | What is the quality of the selected papers? | This question investigates the quality of the selected studies. |
| Q5 | What is the impact of the selected papers on brain tumor detection? | This question investigates the impact of selected papers on the detection of brain tumors with a minimum intervention of radiologists |
Search strings for repositories.
| Repository Name | Search Strings |
|---|---|
| ACM | ((“deep learning” OR “machine learning” OR “artificial intelligence” OR “convolutional neural network” OR “federated learning”) AND (“glioblastoma,” OR “astrocytoma,” OR “brain cancer,” OR “brain tumor”) AND (“detection” OR “classification”)) Publication Year: 2017–2021 |
| IEEE Xplore | ((“document title”: “deep learning” OR “machine learning” OR “artificial intelligence” OR “convolutional neural network” OR “federated learning” OR “supervised learning” OR “Bayesian”) AND (“abstract”: “glioblastoma,” OR “astrocytoma,” OR “brain cancer,” OR “brain tumor”) AND (“detection” OR “classification”)) Publication Year: 2017–2021 |
| Medline | (“deep learning”(All Fields) OR “machine learning”(All Fields) OR “artificial intelligence”(All Fields) OR “convolutional neural network”(All Fields) OR “federated learning”(All Fields) AND (“glioblastoma,”(All Fields) OR (“astrocytoma “(MeSH Terms) OR (“brain”(All Fields) AND “tumor”(All Fields)) OR “brain tumor”[All Fields] OR (“brain”(All Fields) AND “cancer”(All Fields)) OR “brain cancer”(All Fields)) OR “brain tumor”(All Fields)) AND (“detection”(All Fields) OR “diagnosis”(All Fields) OR “classification”(All Fields)) Publication Year: 2017–2021 |
| Elsevier | (“deep learning” OR “machine learning” OR “artificial intelligence” OR “convolutional neural network” OR “federated learning”) AND (“glioblastoma,” OR “astrocytoma,” OR “brain cancer,” OR “brain tumor”) AND (“detection” OR “classification”) Publication Year: 2017–2021 |
| Springer | ((“deep learning” OR “machine learning” OR “artificial intelligence” OR “convolutional neural network” OR “federated learning”) AND (“glioblastoma,” OR “astrocytoma,” OR “brain cancer,” OR “brain tumor”) AND (“detection” OR “classification”)) Publication Year: 2017–2021 |
| Scopus | TITLE-ABS-KEY (“deep learning” OR “machine learning” OR “artificial intelligence” OR “convolutional neural network” OR “federated learning”) AND (“glioblastoma,” OR “astrocytoma,” OR “brain cancer,” OR “brain tumor”) AND (“detection” OR “diagnosis” OR “classification”)) Year: 2017–2021 |
| Wiley | deep-learning OR machine learning OR artificial intelligence OR convolutional neural network OR federated learning AND glioblastoma, OR astrocytoma, OR brain cancer OR brain tumor AND detection OR diagnosis OR classification Year: 2017–2021 |
Figure 2Selection and screening process.
Figure 3Distribution of (a) selected conference papers and (b) selected journal papers; (c) distribution of total selected papers.
Methods for brain tumor diagnosis.
| Publication Contribution | Architecture | Training | Dataset | Source |
|---|---|---|---|---|
| A revamped CapsNet architecture for the detection of brain tumors that carry the coarse tumor borders into the extra pipeline to improve the emphasis of CapsNet. | CNN | CapsNets | CE-MRI | [ |
| Automatic and efficient brain tumor segmentation and detection is achieved by using U-Net. | CNN | U-Net + Resnet50 | BraTS 2015 | [ |
| The performance of the deep learning model was investigated on MRI data from various institutions. | CNN | Deep learning | BraTS benchmark | [ |
| Two-stage cascaded U-Net for brain tumor detection and segmentation. | CNN | U-Net | [ | |
| Brain tumor classification by transferring CNN-based learning to SVM based classifier. | CNN | CNN + SVM | BraTS challenge 2019 | [ |
| Brain tumor classified using CNN, and for the segmentation of tumor, the watershed technique was implemented. | CNN | CNN + Watershed | Non-published brain MRI dataset | [ |
| Fine and coarse features were extracted using hybrid two-path convolution with a modified down-sampling structure. | CNN | Hybrid two-path CNN | Non-published brain MRI | [ |
| CNN was used with the curvelet domain, which extracts features of reasonable resolution and direction. | CNN | CNN + Curvelet domain | BraTS 2017 | [ |
| Active contours used with CNN to automatically segment the tumor faster, independent of image type | DCNN | CNN + Active contour | Non-published brain MRI | [ |
| The fuzzy c-means efficiently segment the tumor, whereas pretrained SqueezNet effectively detects the tumor. | CNN | Fuzzy c-mean + SqueezNet | BraTS 2015 | [ |
| Accurate segmentation was achieved using triangular fuzzy median filters, whereas classification was done using ELM. | CNN | ST + ELM | BraTS 2012. | [ |
| Pre-processing, feature extraction, imaging classification and brain tumor segmentation were achieved using CNN with SVM. | CNN | CNN + SVM | 40 MRI | [ |
| Brain tumor detection using 3D semantic segmentation with conventional encoder–decoder architecture. | CNN | 3D Semantic with encoder decoder | BraTS 2019 | [ |
| CNN and PNN have been utilized to make an intelligent system that can detect tumors of any shape and size efficiently. | CNN | PNN + CNN | BraTS 2013 | [ |
| Optimal threshold value with OTSU for the optimization of the adaptive swarm. This system uses an anisotropic diffusion filter to remove noise, while classification is done by the CNN. | CNN | CNN + OTSU | IBSR dataset + MS free brain dataset | [ |
| Federated learning to improve the training process; for this purpose, multiple organizations collaborated with the privacy of patient data retained. The performance of federated semantic segmentation is demonstrated using a deep learning model. | FL | DNN | Different institutions; collaborated dataset | [ |
| Federated learning based on deep neural network (DNN) for the segmentation of brain tumor using BraTS dataset. | FL | DNN | BraTS 2018 | [ |
| A cross-site modeling platform using FL for the reconstruction of MR images collected from multiple institutions using different scanners and acquisition protocols. The concealed features extracted from different sub-sites are aligned with the concealed features of the main site | FL | DNN | Multiple datasets | [ |
Performance evaluation.
| Classifier | Sensitivity | Specifity | Precision | Accuracy | Dice | Dataset | Source |
|---|---|---|---|---|---|---|---|
| CNN + SoftMax | 100% | 96.42% | 98.83% | 99.12% | ----- | CE-MRI | [ |
| CNN + GA | 95.5% | 98.7% | 95.8% | 97.54% | ----- | Combined dataset | [ |
| Information Fusion + CNN | 99.81% | ----- | 92.7% | ----- | 92.7% | BraTS 2018 | [ |
| Inception V3 + SoftMax | ----- | ----- | 99.0% | ----- | 99.34% | CE-MRI | [ |
| Encoder-decoder neural network | ----- | ----- | ----- | ----- | 89.28% | BraTS 2017 | [ |
| MLBPNN | 95.10% | 99.8% | ----- | 93.33% | ----- | Infrared imaging technology | [ |
| CRF—HCNN | 97.8% | ----- | 96.5% | ----- | ----- | BraTS 2013 & | [ |
| NS—CNN | 96.25% | 95% | ----- | 95.62% | ----- | TCGA-GBM dataset | [ |
| VGG + Stack classifier | 99.1% | ----- | 99.2% | ----- | ----- | Private collected | [ |
| Statistical learning | 92% | 100% | ----- | 96% | 96% | BraTS 2013 | [ |
| Statistical learning | 91% | 90% | ----- | 90% | 95% | BraTS 2015 | [ |
| SWT + GCNN | 98.23% | ----- | 98.81% | ----- | ----- | BRAINIX dataset | [ |
| Handcrafted + Deep learning | 99% | ----- | ----- | 98.78% | 96.36% | BraTS 2015 | [ |
| Handcrafted + Deep learning | 100% | 100% | 100% | 99..63% | 99.62% | BraTS 2016 | [ |
| Handcrafted + Deep learning | ----- | ----- | ----- | 99.69% | 95.06% | BraTS 2017 | [ |
| OTSU +CNN | ----- | ----- | ----- | 98% | ----- | IBSR | [ |
| Stack autoencoder in DL | 88% | 100% | ----- | 90% | 94% | BraTS 2012 | [ |
| Stack autoencoder in DL | 100% | 100% | 100% | BraTS 2012 | [ | ||
| Stack autoencoder in DL | 100% | 90% | ----- | 95% | 100% | BraTS 2013 | [ |
| Stack autoencoder in DL | 98% | 96% | ----- | 97% | 96% | BraTS 2014 | [ |
| Stack autoencoder in DL | 93% | 100% | ----- | 95% | 98% | BraTS 2015 | [ |
| Ensemble | ----- | ----- | ----- | 98.69% | ----- | CE-MRI | [ |
| Densenet201 with EKbHFV & MGA | 99.9% | ----- | 99.9% | 99.9% | ----- | BraTS 2019 | [ |
| CNN | 94.56% | 89% | 93.33% | 94.39% | ----- | CE-MRI | [ |
| Extreme learning | 91.6% | ----- | ----- | ----- | 94.93% | CE-MRI | [ |
| DNN | 98.4% | 98.4% | 99.9% | 98.6% | 98.4% | BraTS 2012 | [ |
| DNN | 99.8% | 98.9% | 98.9% | 99.8% | 99.8% | BraTS 2013 | [ |
| DNN | 92.01% | 95.5% | 95.5% | 93.1% | 92.9% | BraTS 2014 | [ |
| DNN | 95% | 97.2% | ----- | 95.1% | 96% | BraTS 2015 | [ |
| DNN | 99.05% | 98.20% | ----- | 100% | ISLES 2015 | [ | |
| DNN | 99.44% | 100% | ----- | 98.8.7% | 94.63% | ISLES 2017 | [ |
| Brain MRNet | 96.0% | 96.08% | 92.31% | 96.05% | 84.2% | BrainMRI dataset | [ |
| Pretrained CNN | 88.41% | 96.12% | ----- | 94.58% | ----- | CE-MRI | [ |
| RescueNet | 94.89% | ----- | ----- | ----- | 94.29% | BraTS 2015 | [ |
| RescueNet | 99% | ----- | ----- | ----- | ----- | BraTS 2017 | [ |
| Deep learning | 90% | 94% | ----- | ----- | 88% | BraTS 2013 | [ |
| MultiScale CNN | 94% | 97.3% | 82.8% | CE-MRI | [ | ||
| CBIR—TL | ----- | ----- | 96.13% | ----- | ----- | CE-MRI | [ |
| Transfer learning | 80% | 98.1% | ----- | 97% | ----- | BraTS 2015 | [ |
| Score Level Fusion using TL | 95.31% | 96.30% | ----- | ----- | 96.44% | BraTS 2014 | [ |
| Score Level Fusion using TL | 97.62% | 95.05% | ----- | ----- | 97.74% | BraTS 2013 | [ |
| Score Level Fusion using TL | ----- | ----- | ----- | ----- | ----- | BraTS 2015 | [ |
| Score Level Fusion using TL | 99.9% | ----- | ----- | ----- | 100% | BraTS 2016 | [ |
| Score Level Fusion using TL | 91.27% | ----- | ----- | ----- | 99.80% | BraTS 2017 | [ |
| Resnet50 + Unet | ----- | ----- | ----- | 99.61% | ----- | CE-MRI | [ |
| Fine-tuned CNN) | 94.64% | 100% | ----- | 96.88% | ----- | CE-MRI | [ |
| Active DNN | ----- | ----- | ----- | 98.3% | ----- | BraTS 2013 | [ |
| Active DNN | ----- | ----- | 97.2% | 97.8% | 95.0% | BraTS 2015 | [ |
| Active DNN | 98.39% | 96.06% | ----- | 96.9% | 99.59% | BraTS 2017 | [ |
| Active DNN | 98.7% | 99.0% | 99% | 92.5% | 99.94% | BraTS 2018 | [ |
| CNN with non-quantifiable local texture | 90.12% | ----- | ----- | ----- | 85.25% | BraTS 2015 | [ |
| Dtf + Fc7 | 88.9% | 87.5% | ----- | 88% | ----- | 68% patient data collected from 2010–2015 Haushan hospital | [ |
| Densenet with MGA +EKbHFV | 99.7% | ----- | 99.7% | 99.7% | ----- | BraTS 2018 | [ |
| Densenet with MGA + EKbHFV | ----- | ----- | ----- | 99.8% | 98.7% | BraTS 2019 | [ |
Figure 4Taxonomy for brain tumor diagnosis.
Figure 5Common model for brain tumor diagnosis.
Quality of selected papers.
| Publication Number | Source of Publication | Publication Year | Criteria for Quality | |||
|---|---|---|---|---|---|---|
| a | b | c | Final Score | |||
| [ | Conference paper | 2019 | 0.5 | 1.0 | 1.5 | 3.0 |
| [ | Journal paper | 2017 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2019 | 0.5 | 0.5 | 2.0 | 3.0 |
| [ | Conference paper | 2019 | 0.5 | 0.5 | 2.0 | 3.0 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2020 | 1.0 | 1.0 | 1.0 | 3.0 |
| [ | Conference paper | 2017 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2020 | 0.5 | 0.5 | 2.0 | 3.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 0.5 | 0.5 | 2.0 | 3.0 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2018 | 1.0 | 1.0 | 0.5 | 2.5 |
| [ | Conference paper | 2019 | 0.5 | 0.5 | 1.5 | 2.5 |
| [ | Conference paper | 2021 | 0.5 | 1.0 | 1.5 | 3.0 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 0.5 | 1.0 | 1.5 | 3.0 |
| [ | Journal paper | 2019 | 1.0 | 0.5 | 2.0 | 3.5 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2020 | 0.5 | 1.0 | 1.5 | 3.0 |
| [ | Journal paper | 2019 | 1.0 | 0.5 | 2.0 | 3.5 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 0.0 | 2.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2021 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.0 | 4.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.0 | 3.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.0 | 3.0 |
| [ | Journal paper | 2021 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 1.0 | 3.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2018 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2021 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 1.5 | 3.5 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2021 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Conference paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2020 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2019 | 1.0 | 1.0 | 2.0 | 4.0 |
| [ | Journal paper | 2021 | 1.0 | 1.0 | 2.0 | 4.0 |