| Literature DB >> 35207726 |
Anastasia Ponasenko1, Maxim Sinitsky1, Varvara Minina2, Anna Vesnina3, Maria Khutornaya1, Alexander Prosekov3, Olga Barbarash4.
Abstract
More than two billion people around the world are overweight or obese. Even in apparently healthy people, obesity has a potent effect on their quality of life. Experimental data indicate the role of infectious agents in systemic inflammation, revealing a correlation between the dietary habits of people with obesity and the level of systemic inflammation mediators, serum lipid concentration, and hormonal and immune status. This study aimed to determine the association of immune response and lipid metabolism gene polymorphisms with the risk of obesity. This study included 560 Caucasian participants living in Western Siberia (Russian Federation). A total of 52 polymorphic sites in 20 genes were analyzed using the 5' TaqMan nuclease assay. Four risk-associated polymorphic variants were discovered-two variants in immune response genes (IL6R rs2229238, OR = 1.92, 95% CI = 1.36-2.7, p = 0.0002 in the dominant model; IL18 rs1946518, OR = 1.45, 95% CI = 1.03-2.04, p = 0.033 in the over-dominant model) and two variants in lipid metabolism genes (LPA rs10455872, OR = 1.86, 95% CI = 1.07-3.21, p = 0.026 in the log-additive model; LEPR rs1137100, OR = 2.88, 95% CI = 1.52-5.46, p = 0.001 in the recessive model). Thus, polymorphisms in immune response and lipid metabolism genes are potentially associated with the modification of obesity risk in the Caucasian population.Entities:
Keywords: genetic polymorphism; immunity; inflammation; lipid metabolism; obesity
Year: 2022 PMID: 35207726 PMCID: PMC8879873 DOI: 10.3390/jpm12020238
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Characteristics of patients included in the study.
| Index | Number (%) |
|---|---|
| Male | 319 (57) |
| Female | 241 (43) |
| Age ≤60 years (middle-aged patients) | 382 (68) |
| Age >60 years (elderly patients) | 178 (32) |
| BMI ≥30 kg/m2 | 220 (39) |
| BMI ≥30 kg/m2 in middle-aged patients | 156 (41) |
| BMI ≥30 kg/m2 in elderly patients | 64 (36) |
Characteristics of the studied polymorphic variants.
| Gene | Reference SNP Number | Chromosomal Position | Nucleotide Change | Variant Type |
|---|---|---|---|---|
|
| rs5743611 | chr4:38798593 | C > G | Missense variant |
| rs5743551 | chr4:38806033 | T > A, C, G | 5’ UTR variant | |
|
| rs5743708 | chr4:153705165 | G > A | Missense variant |
|
| rs4986791 | chr9:117713324 | C > T | Missense variant |
| rs4986790 | chr9:117713024 | A > G, T | Missense variant | |
|
| rs5743810 | chr4:38828729 | A > C, G, T | Missense variant |
| rs3775073 | chr4:38828211 | T > C, G | Missense variant | |
|
| rs4988956 | chr2:102351547 | G > A | Missense variant |
| rs11685424 | chr2:102310521 | G > A | Upstream transcript variant | |
|
| rs1143634 | chr2:112832813 | G > A | Synonymous variant |
| rs16944 | 2:112837290 | A > G | Upstream transcript variant | |
|
| rs2228145 | chr1:154454494 | A > C, T | Missense variant |
| rs2229238 | chr1:154465420 | T > A, C | 3’ UTR variant | |
|
| rs1800796 | chr7:22726627 | G > A, C | Intron variant |
| rs1554606 | chr7:22729088 | T > A, G | Intron variant | |
| rs2069827 | chr7:22725837 | G > C, T | Upstream transcript variant | |
|
| rs2227306 | chr4:73741338 | C > T | Intron variant |
| rs4073 | chr4:73740307 | A > C, G, T | Upstream transcript variant | |
|
| rs1800871 | chr1:206773289 | A > G | Upstream transcript variant |
| rs1800872 | chr1:206773062 | T > G | Upstream transcript variant | |
| rs1800896 | chr1:206773552 | T > C | Upstream transcript variant | |
|
| rs375947 | chr19:18069641 | A > G | Missense variant |
|
| rs3212227 | chr5:159315942 | T > G | 3’ UTR variant |
|
| rs917997 | chr2:102454108 | T > A, C, G | Not announced |
| rs2058659 | chr2:102438096 | G > A | Intron variant | |
|
| rs13015714 | chr2:102355405 | G > A, T | Upstream transcript variant |
| rs1974675 | chr2:102369915 | G > A | Intron variant | |
| rs6758936 | chr2:102374909 | G > A | Intron variant | |
| rs3755276 | chr2:102361999 | C > T | Intron variant | |
|
| rs187238 | chr11:112164265 | C > A, G | Upstream transcript variant |
| rs360719 | chr11:112165426 | A > G | Upstream transcript variant | |
| rs1946518 | chr11:112164735 | T > G | Upstream transcript variant | |
|
| rs7025417 | chr9:6240084 | T > C, G | Intron variant |
|
| rs1799964 | chr6:31574531 | T > C | Upstream transcript variant |
| rs361525 | chr6:31575324 | G > A | Upstream transcript variant | |
| rs1800629 | chr6:31575254 | G > A | Upstream transcript variant | |
|
| rs3093077 | chr1:159709846 | A > C, G, T | Not announced |
| rs1800947 | chr1:159713648 | C > A, G, T | Synonymous variant | |
| rs1130864 | chr1:159713301 | G > A | Intron variant | |
| rs1205 | chr1:159712443 | C > T | 3’ UTR variant | |
|
| rs429358 | chr19: 44908684 | T > C | Missense variant |
| rs769452 | chr19:44907853 | T > A, C | Missense variant | |
| rs7412 | chr19:44908822 | C > T | Missense variant | |
|
| rs1042031 | chr2:21002881 | C > A, T | Missense variant/Stop gained |
| rs6725189 | chr2:20996129 | G > T | Not announced | |
|
| rs10455872 | chr6:160589086 | A > G | Intron variant |
|
| rs1800588 | chr15:58431476 | C > G, T | Intron variant |
|
| rs16858811 | chr2:218165120 | A > C | Missense variant |
|
| rs1126579 | chr2:218136011 | T > C | 3’ UTR variant |
|
| rs689 | chr11:2160994 | A > G, T | Intron variant |
|
| rs2229765 | chr15:98934996 | G > A, T | Missense variant |
|
| rs7799039 | chr7:128238730 | G > A, C | Not announced |
|
| rs1137101 | chr1:65592830 | A > G, T | Missense variant |
| rs1137100 | chr1:65570758 | A > G, T | Missense variant | |
|
| rs17659543 | chr2:112958729 | C > T | Not announced |
Association of SNPs with risk of obesity, adjusted by gender and age.
| Gene | Model | Genotype | No Obesity, | Obesity, | OR (95% CI) |
| AIC |
|---|---|---|---|---|---|---|---|
| Codominant | C/C | 189 (55.9) | 88 (40) | 1.00 | 0.0009 | 741.5 | |
| T/C | 123 (36.4) | 112 (50.9) | 1.97 (1.37–2.83) | ||||
| T/T | 26 (7.7) | 20 (9.1) | 1.66 (0.88–3.14) | ||||
| Dominant | C/C | 189 (55.9) | 88 (40) | 1.00 | 0.0002 | 739.8 | |
| T/C-T/T | 149 (44.1) | 132 (60) |
| ||||
| Recessive | C/C-T/C | 312 (92.3) | 200 (90.9) | 1.00 | 0.56 | 753.3 | |
| T/T | 26 (7.7) | 20 (9.1) | 1.20 (0.65–2.21) | ||||
| Over-dominant | C/C-T/T | 215 (63.6) | 108 (49.1) | 1.00 | 0.0006 | 741.9 | |
| T/C | 123 (36.4) | 112 (50.9) | 1.83 (1.29–2.58) | ||||
| Log-additive | - | - | - | 1.53 (1.17–2.01) | 0.0016 | 743.7 | |
| Codominant | T/T | 91 (26.8) | 71 (32.3) | 1.00 | 0.022 | 748.8 | |
| A/T | 154 (45.4) | 109 (49.5) | 0.90 (0.61–1.34) | ||||
| A/A | 94 (27.7) | 40 (18.2) | 0.53 (0.33–0.86) | ||||
| Dominant | T/T | 91 (26.8) | 71 (32.3) | 1.00 | 0.15 | 752.4 | |
| A/T-A/A | 248 (73.2) | 149 (67.7) | 0.76 (0.53–1.11) | ||||
| Recessive | T/T-A/T | 245 (72.3) | 180 (81.8) | 1.00 | 0.0065 | 747 | |
| A/A | 94 (27.7) | 40 (18.2) |
| ||||
| Over-dominant | T/T-A/A | 185 (54.6) | 111 (50.5) | 1.00 | 0.32 | 753.5 | |
| A/T | 154 (45.4) | 109 (49.5) | 1.19 (0.85–1.67) | ||||
| Log-additive | - | - | - | 0.74 (0.58–0.94) | 0.013 | 748.3 | |
| Codominant | C/C | 103 (30.3) | 77 (35) | 1.00 | 0.0098 | 748 | |
| C/T | 160 (47.1) | 115 (52.3) | 0.94 (0.64–1.38) | ||||
| T/T | 77 (22.6) | 28 (12.7) | 0.48 (0.28–0.81) | ||||
| Dominant | C/C | 103 (30.3) | 77 (35) | 1.00 | 0.21 | 753.7 | |
| C/T-T/T | 237 (69.7) | 143 (65) | 0.79 (0.55–1.14) | ||||
| Recessive | C/C-C/T | 263 (77.3) | 192 (87.3) | 1.00 | 0.0025 | 746.1 | |
| T/T | 77 (22.6) | 28 (12.7) |
| ||||
| Over-dominant | C/C-T/T | 180 (52.9) | 105 (47.7) | 1.00 | 0.25 | 754 | |
| C/T | 160 (47.1) | 115 (52.3) | 1.22 (0.87–1.71) | ||||
| Log-additive | - | - | - | 0.73 (0.57–0.94) | 0.012 | 749 | |
| Codominant | G/G | 261 (77) | 167 (75.9) | 1.00 | 0.028 | 749.2 | |
| G/A | 77 (22.7) | 47 (21.4) | 0.93 (0.62–1.41) | ||||
| A/A | 1 (0.3) | 6 (2.7) | 10.14 (1.20–85.48) | ||||
| Dominant | G/G | 261 (77) | 167 (75.9) | 1.00 | 0.83 | 754.3 | |
| G/A-A/A | 78 (23) | 53 (24.1) | 1.05 (0.70–1.56) | ||||
| Recessive | G/G-G/A | 338 (99.7) | 214 (97.3) | 1.00 | 0.0081 | 747.3 | |
| A/A | 1 (0.3) | 6 (2.7) |
| ||||
| Over-dominant | G/G-A/A | 262 (77.3) | 173 (78.6) | 1.00 | 0.63 | 754.1 | |
| G/A | 77 (22.7) | 47 (21.4) | 0.90 (0.60–1.37) | ||||
| Log-additive | - | - | - | 1.17 (0.81–1.69) | 0.41 | 753.6 | |
| Codominant | G/G | 111 (32.6) | 63 (28.9) | 1.00 | 0.066 | 748.3 | |
| T/G | 158 (46.5) | 122 (56) | 1.32 (0.89–1.95) | ||||
| T/T | 71 (20.9) | 33 (15.1) | 0.78 (0.46–1.31) | ||||
| Dominant | G/G | 111 (32.6) | 63 (28.9) | 1.00 | 0.45 | 751.2 | |
| T/G-T/T | 229 (67.3) | 155 (71.1) | 1.15 (0.79–1.68) | ||||
| Recessive | G/G-T/G | 269 (79.1) | 185 (84.9) | 1.00 | 0.062 | 748.3 | |
| T/T | 71 (20.9) | 33 (15.1) | 0.65 (0.41–1.03) | ||||
| Over-dominant | G/G-T/T | 182 (53.5) | 96 (44) | 1.00 | 0.033 | 747.2 | |
| T/G | 158 (46.5) | 122 (56) |
| ||||
| Log-additive | - | - | - | 0.93 (0.73–1.20) | 0.59 | 751.5 | |
| Codominant | A/A | 315 (92.7) | 191 (87.6) | 1.00 | 0.032 | 746.6 | |
| A/G | 25 (7.3) | 25 (11.5) | 1.64 (0.92–2.95) | ||||
| G/G | 0 (0) | 2 (0.9) | NA (0.00-NA) | ||||
| Dominant | A/A | 315 (92.7) | 191 (87.6) | 1.00 | 0.049 | 747.6 | |
| A/G-G/G | 25 (7.3) | 27 (12.4) | 1.79 (1.00–3.17) | ||||
| Recessive | A/A-A/G | 340 (100) | 216 (99.1) | 1.00 | 0.042 | 747.3 | |
| G/G | 0 (0) | 2 (0.9) | N/A (0.00-N/A) | ||||
| Over-dominant | A/A-G/G | 315 (92.7) | 193 (88.5) | 1.00 | 0.1 | 748.8 | |
| A/G | 25 (7.3) | 25 (11.5) | 1.62 (0.91–2.92) | ||||
| Log-additive | - | - | - |
| 0.026 | 746.5 | |
| Codominant | A/A | 181 (53.4) | 97 (44.5) | 1.00 | 0.0021 | 740.4 | |
| A/G | 141 (41.6) | 94 (43.1) | 1.24 (0.87–1.78) | ||||
| G/G | 17 (5) | 27 (12.4) | 3.19 (1.64–6.18) | ||||
| Dominant | A/A | 181 (53.4) | 97 (44.5) | 1.00 | 0.036 | 746.2 | |
| A/G-G/G | 158 (46.6) | 121 (55.5) | 1.44 (1.02–2.03) | ||||
| Recessive | A/A-A/G | 322 (95) | 191 (87.6) | 1.00 | 0.001 | 739.8 | |
| G/G | 17 (5) | 27 (12.4) |
| ||||
| Over-dominant | A/A-G/G | 198 (58.4) | 124 (56.9) | 1.00 | 0.76 | 750.6 | |
| A/G | 141 (41.6) | 94 (43.1) | 1.06 (0.75–1.49) | ||||
| Log-additive | - | - | - | 1.53 (1.16–2.00) | 0.0021 | 741.2 |
Note: Statistically significant results after applying Akaike’s information criterion (AIC) are highlighted in bold.
Association of SNPs with risk of obesity in groups stratified by gender.
| Gene | Gender | Genotype | No Obesity, | Obesity, | OR (95%CI) |
|
|---|---|---|---|---|---|---|
| Male | C/C | 112 | 43 | 1.00 | 0.002 | |
| T/C | 73 | 64 |
| |||
| T/T | 15 | 10 | 1.74 (0.73–4.17) | |||
| Female | C/C | 77 | 45 | 1.00 | 0.08 | |
| T/C | 50 | 48 | 1.65 (0.96–2.83) | |||
| T/T | 11 | 10 | 1.57 (0.62–4.00) | |||
| Male | C/C | 66 | 42 | 1.00 | 0.5 | |
| C/T | 92 | 61 | 1.04 (0.63–1.72) | |||
| T/T | 44 | 14 | 0.51 (0.25–1.04) | |||
| Female | C/C | 37 | 35 | 1.00 | 0.04 | |
| C/T | 68 | 54 | 0.83 (0.46–1.49) | |||
| T/T | 33 | 14 |
| |||
| Male | A/A | 58 | 37 | 1.00 | 0.023 | |
| G/A | 91 | 65 | 1.12 (0.67–1.89) | |||
| G/G | 51 | 15 |
| |||
| Female | A/A | 45 | 30 | 1.00 | 0.43 | |
| G/A | 67 | 49 | 1.11 (0.61–2.01) | |||
| G/G | 26 | 24 | 1.39 (0.68–2.87) | |||
| Male | G/G | 70 | 43 | 1.00 | 0.48 | |
| T/G | 94 | 59 | 1.01 (0.61–1.66) | |||
| T/T | 38 | 15 | 0.63 (0.31–1.28) | |||
| Female | G/G | 41 | 20 | 1.00 | 0.03 | |
| T/G | 64 | 63 |
| |||
| T/T | 33 | 18 | 1.10 (0.50–2.41) | |||
| Male | A/A | 105 | 53 | 1.00 | 0.028 | |
| A/G | 83 | 45 | 1.07 (0.66–1.75) | |||
| G/G | 13 | 18 |
| |||
| Female | A/A | 76 | 44 | 1.00 | 0.004 | |
| A/G | 58 | 49 | 1.48 (0.87–2.53) | |||
| G/G | 4 | 9 | 4.04 (1.17–13.94) |
Note: Statistically significant results are highlighted in bold.
Association of SNPs with obesity risk in groups stratified by age.
| Gene | Age | Genotype | No Obesity, | Obesity, | OR (95%CI) |
|
|---|---|---|---|---|---|---|
| ≤60 years | A/A | 94 | 88 | 1.00 | 0.004 | |
| A/C | 107 | 59 |
| |||
| C/C | 24 | 9 |
| |||
| >60 years | A/A | 63 | 25 | 1.00 | 0.027 | |
| A/C | 40 | 32 |
| |||
| C/C | 10 | 7 | 1.70 (0.58–4.98) | |||
| ≤60 years | C/C | 130 | 59 | 1.00 | 0.015 | |
| T/C | 82 | 81 |
| |||
| T/T | 14 | 16 |
| |||
| >60 years | C/C | 59 | 29 | 1.00 | 0.49 | |
| T/C | 41 | 31 | 1.54 (0.80–2.93) | |||
| T/T | 12 | 4 | 0.67 (0.20–2.25) | |||
| ≤60 years | T/T | 59 | 50 | 1.00 | 0.027 | |
| A/T | 100 | 79 | 0.93 (0.58–1.51) | |||
| A/A | 67 | 27 |
| |||
| >60 years | T/T | 32 | 21 | 1.00 | 0.07 | |
| A/T | 54 | 30 | 0.84 (0.41–1.71) | |||
| A/A | 27 | 13 | 0.74 (0.31–1.75) | |||
| ≤60 years | C/C | 65 | 54 | 1.00 | 0.04 | |
| C/T | 110 | 82 | 0.89 (0.56–1.40) | |||
| T/T | 51 | 20 |
| |||
| >60 years | C/C | 38 | 23 | 1.00 | 0.05 | |
| C/T | 50 | 33 | 1.08 (0.55–2.14) | |||
| T/T | 26 | 8 | 0.52 (0.20–1.36) | |||
| ≤60 years | G/G | 115 | 79 | 1.00 | 0.19 | |
| G/A | 98 | 62 | 0.91 (0.59–1.39) | |||
| A/A | 13 | 15 | 1.70 (0.77–3.78) | |||
| >60 years | G/G | 55 | 22 | 1.00 | 0.01 | |
| G/A | 47 | 37 |
| |||
| A/A | 12 | 5 | 1.04 (0.33–3.29) | |||
| ≤60 years | A/A | 125 | 70 | 1.00 | 0,03 | |
| A/G | 93 | 67 | 1.29 (0.84–1.98) | |||
| G/G | 8 | 18 |
| |||
| >60 years | A/A | 56 | 27 | 1.00 | 0.15 | |
| A/G | 48 | 27 | 1.14 (0.59–2.20) | |||
| G/G | 9 | 9 | 2.12 (0.75–5.98) | |||
| ≤60 years | T/T | 86 | 64 | 1.00 | 0.36 | |
| T/C | 106 | 68 | 0.86 (0.55–1.34) | |||
| C/C | 34 | 24 | 0.95 (0.52–1.77) | |||
| >60 years | T/T | 56 | 16 | 1.00 | 0.01 | |
| T/C | 41 | 30 |
| |||
| C/C | 17 | 17 |
|
Note: Statistically significant results are highlighted in bold.