| Literature DB >> 35205828 |
Benedikt Schmidl1, Michael Siegl1, Melanie Boxberg2, Fabian Stögbauer2, Daniel Jira1, Christof Winter3, Leonhard Stark1, Anja Pickhard1, Barbara Wollenberg1, Markus Wirth1.
Abstract
(1) Background: NOTCH1 is the second most common mutated gene in whole-exome sequencing of HNSCC. The aim of this project was to gain further insight into the relevance of NOTCH1 in HNSCC, potentially establishing NOTCH1 as a prognostic marker or therapeutic target; (2)Entities:
Keywords: HNSCC; HPV; NICD; NOTCH1; OPSCC; immune system; immunoscore
Year: 2022 PMID: 35205828 PMCID: PMC8870336 DOI: 10.3390/cancers14041080
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Primers and annealing temperatures for qPCR.
| Primer | Sequence | Annealing Temperature |
|---|---|---|
| NOTCH1 forward | TGAATGGCGGGAAGTGTGAAG | 62 °C |
| GAPDH forward | AGCCACATCGCTCAGACA | 56 °C |
Figure 1Results of (a) migration assay (scratch assay, 9 h) and (b) proliferation assay (72 h) after siRNA-mediated NOTCH1 knockdown, inhibition of NOTCH1 signaling via DAPT, and stimulation with DLL4; depicted are the grouped results of all six cell lines, the three HPV+ cell lines and the three HPV− cell lines. Data are depicted as mean ± SD. Significance was tested with one-way ANOVA and Dunnet’s multiple testing (** means p < 0.01, *** means p < 0.001, **** means p < 0.0001).
Depiction of clinicopathological characteristics and distribution of parameters in high and low NICD or NOTCH1 expression groups in the 70 oropharyngeal squamous cell carcinoma (OPSCC) patients included in this study (60 of these with mRNA data).
| Variate | Overall | NICD IHC Expression | Overall | NOTCH1 mRNA Expression | ||||
|---|---|---|---|---|---|---|---|---|
| Low | High | Low | High | |||||
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| ||||||||
| T1/T2 | 48 (68.6%) | 23 | 25 | 43 (71.7%) | 26 | 17 | ||
| T3/T4 | 22 (31.4%) | 5 | 17 | 0.0659 | 17 (28.3%) | 4 | 13 | 0.0204 |
|
| ||||||||
| N0 | 20 (28.6%) | 12 | 8 | 17 (28.3%) | 10 | 7 | ||
| N1-3 | 50 (71.4%) | 16 | 34 | 0.0571 | 43 (71.7%) | 20 | 23 | 0.5676 |
|
| ||||||||
| M0 | 67 (95.7%) | 28 | 39 | 57 (95%) | 29 | 28 | ||
| M1 | 3 (4.3%) | 0 | 3 | 0.2696 | 3 (5%) | 1 | 2 | >0.9999 |
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| p16 | 26 (37.1%) | 6 | 20 | 23 (38.3%) | 8 | 15 | ||
| p16 | 44 (62.9%) | 22 | 22 | 0.0425 | 37 (61.7%) | 22 | 15 | 0.1102 |
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| ||||||||
| Male | 56 (80%) | 24 | 31 | 47 (78.3%) | 24 | 23 | ||
| Female | 14 (20%) | 4 | 11 | 0.3730 | 13 (21.7%) | 6 | 7 | >0.9999 |
Figure 2(a) Exemplary images of immunohistochemical NICD staining in HNSCC; (b) Association of NICD and immunoscore; (c) Overall survival of patients in relation to NICD expression (p value (log-rank) = 0.0477); (d) OS of patients in relation to the immunoscore (p value (log-rank) = 0.022); (e) OS of patients in relation to NICD expression and the immunoscore (p value (log-rank) = 0.0061).