Literature DB >> 35192991

MOVER approximated CV: A tool for quantifying precision in ratiometric droplet digital PCR assays.

Christian Dide-Agossou1, Karen Rossmassler2, Justin Reid2, Juhi Purohit2, Rada M Savic3, Payam Nahid4, Patrick P J Phillips5, Camille M Moore6, Nicholas D Walter7.   

Abstract

Droplet digital PCR is a particularly valuable tool for ratiometric assays because it provides simultaneous absolute quantification of two target sequences in a single assay. This manuscript addresses a challenge in establishing a new ratiometric droplet digital PCR assay for use in sputum, the rRNA synthesis ratio. In principle, the methods established to evaluate precision and determine the limit of quantification for a single measurand cannot be applied to a ratiometric assay. The precision of a ratio depends on precision in both the numerator and denominator. Here, we evaluated the MOVER approximated coefficient of variation as indicator of assay precision that does not require technical replicates. We estimated the MOVER approximated coefficient of variation in dilution series and routine assays and evaluated its agreement with the traditional coefficient of variation. We found that the MOVER approximated coefficient of variation was able to recapitulate the traditional coefficient of variation without the requirement for replicate assays. We also demonstrated that the MOVER approximated coefficient of variation threshold can be used to define the limit of quantification of the rRNA synthesis Ratio. In conclusion, the MOVER approximated coefficient of variation may be useful not only for the rRNA synthesis ratio but for other assays that measure ratios via droplet digital PCR.
Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Droplet Digital PCR Assay; Precision Measurement; Quantification Limit; Ratio Measurement

Mesh:

Year:  2022        PMID: 35192991      PMCID: PMC8923918          DOI: 10.1016/j.jpba.2022.114664

Source DB:  PubMed          Journal:  J Pharm Biomed Anal        ISSN: 0731-7085            Impact factor:   3.571


  25 in total

Review 1.  Early clinical development of anti-tuberculosis drugs: science, statistics and sterilizing activity.

Authors:  Geraint R Davies
Journal:  Tuberculosis (Edinb)       Date:  2010-04-10       Impact factor: 3.131

Review 2.  Validation of laboratory-developed molecular assays for infectious diseases.

Authors:  Eileen M Burd
Journal:  Clin Microbiol Rev       Date:  2010-07       Impact factor: 26.132

3.  Limit of blank, limit of detection and limit of quantitation.

Authors:  David A Armbruster; Terry Pry
Journal:  Clin Biochem Rev       Date:  2008-08

4.  Detection and quantification of BCR-ABL1 fusion transcripts by droplet digital PCR.

Authors:  Lawrence J Jennings; David George; Juliann Czech; Min Yu; Loren Joseph
Journal:  J Mol Diagn       Date:  2013-12-31       Impact factor: 5.568

5.  Clinical applications using digital PCR.

Authors:  Francisco Bizouarn
Journal:  Methods Mol Biol       Date:  2014

6.  Droplet digital PCR for BCR/ABL(P210) detection of chronic myeloid leukemia: A high sensitive method of the minimal residual disease and disease progression.

Authors:  Wen-Jun Wang; Chao-Feng Zheng; Zhuang Liu; Yan-Hong Tan; Xiu-Hua Chen; Bin-Liang Zhao; Guo-Xia Li; Zhi-Fang Xu; Fang-Gang Ren; Yao-Fang Zhang; Jian-Mei Chang; Hong-Wei Wang
Journal:  Eur J Haematol       Date:  2018-07-12       Impact factor: 2.997

7.  Droplet digital polymerase chain reaction (ddPCR) assays integrated with an internal control for quantification of bovine, porcine, chicken and turkey species in food and feed.

Authors:  Hanan R Shehata; Jiping Li; Shu Chen; Helen Redda; Shumei Cheng; Nicole Tabujara; Honghong Li; Keith Warriner; Robert Hanner
Journal:  PLoS One       Date:  2017-08-10       Impact factor: 3.240

8.  Mathematical analysis of copy number variation in a DNA sample using digital PCR on a nanofluidic device.

Authors:  Simant Dube; Jian Qin; Ramesh Ramakrishnan
Journal:  PLoS One       Date:  2008-08-06       Impact factor: 3.240

9.  Validation of a digital PCR method for quantification of DNA copy number concentrations by using a certified reference material.

Authors:  Liesbet Deprez; Philippe Corbisier; Anne-Marie Kortekaas; Stéphane Mazoua; Roxana Beaz Hidalgo; Stefanie Trapmann; Hendrik Emons
Journal:  Biomol Detect Quantif       Date:  2016-08-30

10.  Development of a duplex droplet digital PCR assay for absolute quantitative detection of "Candidatus Liberibacter asiaticus".

Authors:  Vijayanandraj Selvaraj; Yogita Maheshwari; Subhas Hajeri; Jianchi Chen; Thomas Greg McCollum; Raymond Yokomi
Journal:  PLoS One       Date:  2018-05-17       Impact factor: 3.240

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