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Literature DB >> 35190702

Revealing chromosome contours, one dot at a time.

Amber Dance.

Abstract

Entities: Chemical

Keywords: Computational biology and bioinformatics; Epigenetics; Genomics; Transcriptomics

Mesh：

Year: 2022 PMID： 35190702 DOI： 10.1038/d41586-022-00496-7

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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References

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7 in total

1. 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing.

Authors: Huy Q Nguyen; Shyamtanu Chattoraj; David Castillo; Son C Nguyen; Guy Nir; Antonios Lioutas; Elliot A Hershberg; Nuno M C Martins; Paul L Reginato; Mohammed Hannan; Brian J Beliveau; George M Church; Evan R Daugharthy; Marc A Marti-Renom; C-Ting Wu
Journal: Nat Methods Date: 2020-07-27 Impact factor: 28.547

2. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.

Authors: Sofia A Quinodoz; Noah Ollikainen; Barbara Tabak; Ali Palla; Jan Marten Schmidt; Elizabeth Detmar; Mason M Lai; Alexander A Shishkin; Prashant Bhat; Yodai Takei; Vickie Trinh; Erik Aznauryan; Pamela Russell; Christine Cheng; Marko Jovanovic; Amy Chow; Long Cai; Patrick McDonel; Manuel Garber; Mitchell Guttman
Journal: Cell Date: 2018-06-07 Impact factor: 41.582

3. Single-cell in situ RNA profiling by sequential hybridization.

Authors: Eric Lubeck; Ahmet F Coskun; Timur Zhiyentayev; Mubhij Ahmad; Long Cai
Journal: Nat Methods Date: 2014-04 Impact factor: 28.547

4. In situ genome sequencing resolves DNA sequence and structure in intact biological samples.

Authors: Andrew C Payne; Zachary D Chiang; Paul L Reginato; Edward S Boyden; Jason D Buenrostro; Fei Chen; Sarah M Mangiameli; Evan M Murray; Chun-Chen Yao; Styliani Markoulaki; Andrew S Earl; Ajay S Labade; Rudolf Jaenisch; George M Church
Journal: Science Date: 2020-12-31 Impact factor: 47.728

Revealing chromosome contours, one dot at a time.

1. 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing.

2. Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.

3. Single-cell in situ RNA profiling by sequential hybridization.

4. In situ genome sequencing resolves DNA sequence and structure in intact biological samples.

5. Single-cell nuclear architecture across cell types in the mouse brain.

6. Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.

7. Insulator dysfunction and oncogene activation in IDH mutant gliomas.