| Literature DB >> 35175501 |
Sean Grant1, Kathleen E Wendt2, Bonnie J Leadbeater3, Lauren H Supplee4, Evan Mayo-Wilson5, Frances Gardner6, Catherine P Bradshaw7.
Abstract
The field of prevention science aims to understand societal problems, identify effective interventions, and translate scientific evidence into policy and practice. There is growing interest among prevention scientists in the potential for transparency, openness, and reproducibility to facilitate this mission by providing opportunities to align scientific practice with scientific ideals, accelerate scientific discovery, and broaden access to scientific knowledge. The overarching goal of this manuscript is to serve as a primer introducing and providing an overview of open science for prevention researchers. In this paper, we discuss factors motivating interest in transparency and reproducibility, research practices associated with open science, and stakeholders engaged in and impacted by open science reform efforts. In addition, we discuss how and why different types of prevention research could incorporate open science practices, as well as ways that prevention science tools and methods could be leveraged to advance the wider open science movement. To promote further discussion, we conclude with potential reservations and challenges for the field of prevention science to address as it transitions to greater transparency, openness, and reproducibility. Throughout, we identify activities that aim to strengthen the reliability and efficiency of prevention science, facilitate access to its products and outputs, and promote collaborative and inclusive participation in research activities. By embracing principles of transparency, openness, and reproducibility, prevention science can better achieve its mission to advance evidence-based solutions to promote individual and collective well-being.Entities:
Keywords: Open science; Prevention; Replication; Reproducibility; Research transparency
Mesh:
Year: 2022 PMID: 35175501 PMCID: PMC9283153 DOI: 10.1007/s11121-022-01336-w
Source DB: PubMed Journal: Prev Sci ISSN: 1389-4986
Glossary
| Analysis Plan | Technical, detailed elaboration of the procedures for executing the analysis described in the protocol | Gamble et al. ( |
| Availability Standards | Guidelines for making data, analytic code, and research materials findable, accessible, interoperable, and reusable | Nosek et al. ( |
| Dynamic Documents | Documents combining code, rendered output, and prose that can be continually edited and updated | Xie et al. ( |
| Inferential Reproducibility | Making knowledge claims of similar strength from a study replication or reanalysis | Goodman et al. ( |
| Methods Reproducibility | Ability to implement study procedures as exactly as possible, with the same data and tools, to obtain the same results | Goodman et al. ( |
| Open Access | Free, immediate, online availability of research articles, with copyright that allows sharing and adaptation | Tennant et al. ( |
| Open Notebook | Practice of making the primary record of a research project publicly available (e.g., online as it is recorded) | Schapira and Harding ( |
| Open Source | Software source code released with a copyright that allows use, adaptation, and distribution for any purpose | Peng ( |
| Preprints | Version of a scientific manuscript posted on a public server prior to formal peer review | Sarabipour et al. ( |
| Protocol | Document with comprehensive details on study background, rationale, objectives, design, and methods | Chan et al. ( |
| Registered Reports | Publishing format in which protocols undergo peer review, followed by in-principle acceptance of the results paper | Chambers ( |
| Reporting Standards | Minimum set of study information needed for an accurate, complete, and transparent account of what was done and found | Simera et al. ( |
| Research Lifecycle | Stages of a research study, such as prioritization, design, conduct, reporting, and overall management of a research study | National Academies of Sciences ( |
| Results Reproducibility | Production of corroborating results in a new study, having followed the same methods as the original study | Goodman et al. ( |
| Scientific Ecosystem | Interacting community of scientific stakeholders and their environments | Moher et al. ( |
| Study Registration | Process of entering a minimum dataset about an empirical study in an independently controlled registry that is accessible to the public | De Angelis et al. ( |
| Version Control | System that records changes to files over time in a way the facilitates later recall of specific file versions | Gentzkow and Shapiro ( |
| Workflow | Management and organization of folders, files, metadata, analytic code, and other study data documentation | Project TIER ( |
Fig. 1Roadmap for a Transparent, Open, and Reproducible Research Lifecycle. Note: Figure adapted from the roadmap co-developed by SG for the Berkeley Initiative for Transparency in the Social Sciences Research Transparency and Reproducibility Training (RT2) workshops: https://www.bitss.org/resource-library/
Proposed Stakeholder Actions for Supporting Open Science
| Researchers | Adopt transparent, open, and reproducible research practices in empirical prevention science | Christensen et al. ( |
| Universities and Research Institutions | Explicitly support, recognize, and reward the use of transparent, open, and reproducible practices by faculty and researchers | Moher et al. ( |
| Students, Postdocs and Early Career | Enroll in courses and training in open science practices, build coalitions for peer support, and incorporate open science into daily lab work, dissertations, and research | Morling and Calin-Jageman ( |
| Journals and Publishers | Implement policies and procedures that promote publishing articles of transparent, open, and reproducible research | Nosek et al. ( |
| Funders | Promote or mandate adherence to open science practices in grant applications and funded projects | National Academies of Sciences ( |
| Scientific Societies | Advance the use of transparent, open, and reproducible research practices in guidance, conference proceedings, and trainings | McVay and Conroy ( |
| Practitioners | Advocate for transparent, open, and reproducible research practice in empirical scientific studies of and standards for establishing evidence-based interventions | Mayo-Wilson et al. ( |
| Policymakers | Incorporate transparent, open, and reproducible research practices into policy analysis and standards of evidence | Hoces de la Guardia et al. ( |
| Media | Incorporate considerations and standards related to transparency, openness, and reproducibility when reporting about science to the public | Academy of Medical Sciences ( |
| The Public | Participate and collaborate in scientific research to increase scientific knowledge and address problems of concern in their local communities | Chari et al. ( |
Fig. 2Logic Models of Open Science "Problem Theory" and "Program Theory"
Potential Reservations about Open Prevention Science: A Tool for Promoting Discussion
| The field of prevention science is so different from clinical medicine and lab-based experiments that “open science” doesn’t really fit with the type of work we do | Open science is for all fields of science. The goal of open science is to make the scientific process (rationale, design, methods, statistical approaches) transparent and the results more accessible to scientific and public audiences. This goal is especially important for prevention science to fulfill its mission because it must be accessible and trusted by policymakers and the public |
| Open science dictates one type of scientific study for everyone and restricts academic freedom and discovery | Open science is a set of principles supporting transparency in scientific discovery across scientific methods. These principles can be operationalized in ways sensitive to the underpinnings of each type of study and that respect exploratory work |
| Prospective registration doesn’t work for prevention science because it is difficult to predict all the possible outcomes that might result for a preventive intervention (particularly over the life course), and it precludes exploratory work (like subgroup effects) | Prospective registration does not preclude the addition of outcomes over the course of a study. Rather, it transparently documents which research questions, hypotheses, outcomes, and analyses were planned at which points in time of a research project |
| Study registration isn’t appropriate or needed for descriptive or epidemiologic studies; it is really only relevant for research using hypothesis testing approaches such as RCTs | Study registration can be useful to document the existence and link products for any empirical study. While prospective registration of study protocols and analysis plans is an established practice in randomized trials, researchers using other study designs are discovering benefits to the transparent documentation of the planned research approach prior to study initiation |
| Data archiving is an expensive and burdensome process, particularly because it typically happens after the award ends when the grant has already closed out and there is no funding left to support it | While it is true data archiving has costs, many funders are beginning to either require or encourage the practice, opening the potential for archiving processes to be built into grant budgets and timelines |
| I don’t have the time or staffing to respond to questions or requests for data files from old projects, and it is too much work to do all of this extra stuff to make my files available to other researchers | Archiving data following best-practices can improve the quality of the data available to external parties, minimizing the amount and intensity of requests. Planning for data archiving at the outset of projects can minimize the “extra” amount of work involved |
| I am concerned that if I archive my data sets, someone will try to scoop me before I have had a chance to publish my main findings or supplemental studies | Several platforms allow for archiving data with an embargo period, providing researchers with protected time to publish their findings after self-archiving |
| I am concerned that, if I make my data files and code available to others, then someone may try to prove me wrong, make me look bad, or imply I am unethical or biased in my reporting of prior findings | As with any principles, open science practices have the potential for competitive use or personal gains at the expense of others. The documentation of research rationales, designs, methods, data, and analyses may afford protection against nefarious charges |
| I worked hard to collect all these data, and my collaborators and study partners trust me to keep the data private | There are sophisticated methods for protecting the privacy of data (e.g., data masking, pseudonymization, data generalization, and synthetic data creation) |
| These data reflect years of my effort and energy. Why would I want to just turn them over to anyone else? | Advances in science rely on shared information across researchers and disciplines. Rather than just publishing findings, open science advocates for sharing additional scientific products like data to expand discovery |
| Our consent forms did not include the archiving of data for future research use, so we cannot archive or share data | Research conducted in the past needs to follow the data sharing permissions granted in the informed consent. Going forward, investigators should use informed consent templates that allow for future research use |
| My IRB or study participants won’t let me archive or share my data, as it is too sensitive | Open science principles encourage data sharing but not at the expense of privacy and confidentiality. There may be some data that is sensitive or subject to privacy concerns. However, much of the data collected in prevention science can be shared in fully de-identified form, while protecting privacy and confidentiality |
| I work with Indigenous groups who own data collected and do not want it shared | Research conducted in partnership with Indigenous groups should discuss data sharing as part of study preparation activities. Teams should respect Indigenous Peoples’ rights to control, access, and govern their data |
| Genetic data cannot be used for research outside of its intended purpose and therefore cannot be shared, so open science rules cannot apply to these data | Ethical principles in the use and sharing of genetic data are unique and should be clearly discussed in study planning and transparent in consent forms |
| Prevention studies are not sufficiently funded or resourced to do these additional types of open science activities | As support for open science grows, public and private funders are increasingly including allowances or requirements for open science practices and providing grant support for these activities. In addition, many open science practices are already part of standard research practices, such as clarifying study designs, publishing study protocols, and pre-analysis plans in grant applications |
| The effect sizes for many preventive programs are often small, reflecting the complexity of our work. As such, the application of open science standards has a strong potential to undermine our findings and funding for future prevention research | Prevention science is dedicated to a rigorous process for identifying evidence-based practices using high standards of evidence. Where effect sizes are not robust, this might suggest the need to further enhance the impact and potency of preventative interventions to yield larger impacts |
| Restrictive rules can set the field back, particularly with regard to public perspective on the impact of prevention, much less scale up of any programs previously thought to be “effective.” | Evidence-based policy depends on the trust and understanding that decision-makers and the public have in research. Support for evidence-based policy will continue if it produces strong replicable outcomes. Open science practices can support these goals |
| My university doesn’t give “credit” for engaging in open science, publishing in open access journals, posting pre-prints, or sharing data. I can’t spend a lot of my time doing something that doesn’t count for promotion | Many open science practices can increase researchers’ impact on the field through broader dissemination of findings, engaging with other researchers in collaboration and dialog, and increasing professional reputations |
| Early-career scholars will be negatively affected by having to follow all these new requirements | The science of early-career scholars has the potential to be strengthened through increased collaboration, increased public awareness and value for their science, and the use of resources such as open methods and open data to advance their science |