Literature DB >> 35171473

Measuring Bulk Translation Activity in Single Mammalian Cells During the Integrated Stress Response.

Alyssa M English1,2, Stephanie L Moon3,4.   

Abstract

The attenuation of global translation is a critical outcome of the integrated stress response (ISR). Consequently, it is important to effectively detect and measure protein synthesis in studies seeking to evaluate the ISR. This chapter details two methods, surface sensing of translation (SUnSET) and fluorescent noncanonical amino acid tagging (FUNCAT), to measure global translation activity in individual cells using fluorescence microscopy as a read-out. Detecting bulk translation activity in single cells is advantageous for the concurrent observation of newly synthesized proteins and other cellular structures and to identify differences in translation activity among individuals within a population of cells.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Click chemistry; FUNCAT; Fluorescent noncanonical amino acid tagging; Immunofluorescence; Integrated stress response; Puromycin; Puromycylation; SUnSET; Surface sensing of translation; Translation

Mesh:

Substances:

Year:  2022        PMID: 35171473     DOI: 10.1007/978-1-0716-1975-9_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  32 in total

1.  PUROMYCIN INHIBITION OF PROTEIN SYNTHESIS: INCORPORATION OF PUROMYCIN INTO PEPTIDE CHAINS.

Authors:  D NATHANS
Journal:  Proc Natl Acad Sci U S A       Date:  1964-04       Impact factor: 11.205

2.  INHIBITION BY PUROMYCIN OF AMINO ACID INCORPORATION INTO PROTEIN.

Authors:  M B Yarmolinsky; G L Haba
Journal:  Proc Natl Acad Sci U S A       Date:  1959-12       Impact factor: 11.205

3.  SUnSET, a nonradioactive method to monitor protein synthesis.

Authors:  Enrico K Schmidt; Giovanna Clavarino; Maurizio Ceppi; Philippe Pierre
Journal:  Nat Methods       Date:  2009-03-22       Impact factor: 28.547

4.  In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons.

Authors:  Daniela C Dieterich; Jennifer J L Hodas; Géraldine Gouzer; Ilya Y Shadrin; John T Ngo; Antoine Triller; David A Tirrell; Erin M Schuman
Journal:  Nat Neurosci       Date:  2010-06-13       Impact factor: 24.884

5.  Puromycin reaction of the A-site bound peptidyl-tRNA.

Authors:  Y P Semenkov; T G Shapkina; S V Kirillov
Journal:  Biochimie       Date:  1992-05       Impact factor: 4.079

6.  RNase L Reprograms Translation by Widespread mRNA Turnover Escaped by Antiviral mRNAs.

Authors:  James M Burke; Stephanie L Moon; Tyler Matheny; Roy Parker
Journal:  Mol Cell       Date:  2019-09-04       Impact factor: 17.970

Review 7.  The integrated stress response: From mechanism to disease.

Authors:  Mauro Costa-Mattioli; Peter Walter
Journal:  Science       Date:  2020-04-24       Impact factor: 47.728

Review 8.  The science of puromycin: From studies of ribosome function to applications in biotechnology.

Authors:  Ranen Aviner
Journal:  Comput Struct Biotechnol J       Date:  2020-04-24       Impact factor: 7.271

Review 9.  The integrated stress response.

Authors:  Karolina Pakos-Zebrucka; Izabela Koryga; Katarzyna Mnich; Mila Ljujic; Afshin Samali; Adrienne M Gorman
Journal:  EMBO Rep       Date:  2016-09-14       Impact factor: 8.807

10.  EIF2B2 mutations in vanishing white matter disease hypersuppress translation and delay recovery during the integrated stress response.

Authors:  Stephanie L Moon; Roy Parker
Journal:  RNA       Date:  2018-04-09       Impact factor: 4.942

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