| Literature DB >> 35164963 |
Biao Tang1, Fan Xia2, Nicola Luigi Bragazzi3, Zachary McCarthy4, Xia Wang5, Sha He5, Xiaodan Sun2, Sanyi Tang5, Yanni Xiao2, Jianhong Wu6.
Abstract
We conducted a comparative study of the COVID-19 epidemic in three different settings: mainland China, the Guangdong province of China and South Korea, by formulating two disease transmission dynamics models which incorporate epidemic characteristics and setting-specific interventions, and fitting the models to multi-source data to identify initial and effective reproduction numbers and evaluate effectiveness of interventions. We estimated the initial basic reproduction number for South Korea, the Guangdong province and mainland China as 2.6 (95% confidence interval (CI): (2.5, 2.7)), 3.0 (95%CI: (2.6, 3.3)) and 3.8 (95%CI: (3.5,4.2)), respectively, given a serial interval with mean of 5 days with standard deviation of 3 days. We found that the effective reproduction number for the Guangdong province and mainland China has fallen below the threshold 1 since February 8th and 18th respectively, while the effective reproduction number for South Korea remains high until March 2nd Moreover our model-based analysis shows that the COVID-19 epidemics in South Korean is almost under control with the cumulative confirmed cases tending to be stable as of April 14th. Through sensitivity analysis, we show that a coherent and integrated approach with stringent public health interventions is the key to the success of containing the epidemic in China and especially its provinces outside its epicenter. In comparison, we find that the extremely high detection rate is the key factor determining the success in controlling the COVID-19 epidemics in South Korea. The experience of outbreak control in mainland China and South Korea should be a guiding reference for the rest of the world.Entities:
Keywords: COVID-19 epidemic; Comparative study; Mainland china and south korea; Mathematical model; Multi-source data
Mesh:
Year: 2021 PMID: 35164963 PMCID: PMC8713134 DOI: 10.1016/j.isatra.2021.12.004
Source DB: PubMed Journal: ISA Trans ISSN: 0019-0578 Impact factor: 5.911
Fig. 1The datasets related to the COVID-19 epidemics, including newly reported cases, cumulative number of reported cases, cumulative number of cured cases, cumulative number of death cases, cumulative quarantined cases and cumulative suspected cases for mainland China (A–C), the Guangdong province of China (E), and South Korea (F).
Fig. 2The illustration of the compartmental models incorporating important interventions and features of reporting systems, for mainland China (model I) including its Province of Guangdong, and for South Korea (model II).
Parameter estimates for the COVID-19 epidemic in China, Guangdong Province of China and Korea.
| Parameter | Definitions | Estimated values | Source | |||
|---|---|---|---|---|---|---|
| Guangdong | China | Korea | ||||
| Contact rate at the initial time | 14.78 | 21.9 (Est) | ||||
| Minimum contact rate under the current control strategies | 4.00 | 7.78 | 2.01 | Estimated | ||
| Exponential decreasing rate of contact rate | 0.01 | 2 | 0.1312 | Estimated | ||
| Probability of transmission per contact | 0.13 | 0.143 | 0.143 (F) | Estimated | ||
| Modification factor of the transmission probability of asymptotical infected individual | 0.02 | 0.0437 | 0.1758 | Estimated | ||
| Quarantined rate of exposed individuals at the initial time | 0.28 | – | Estimated | |||
| Maximum quarantined rate of exposed individuals under the current control strategies | 0.99 | 0.8 | – | Estimated | ||
| Exponential increasing rate of quarantined rate of exposed individuals | 0.0361 | 0.15 | – | Estimated | ||
| Constant quarantined rate | – | – | 02215 | Estimated | ||
| Transition rate of susceptible individuals to the suspected class | Estimated | |||||
| Detection rate of the suspected class | 0.0891 | 0.20 | 0.4004 | Estimated | ||
| Confirmation ratio: Transition rate of exposed individuals in the suspected class to the quarantined infected class | 0.01 | 0.50 | 0.001 | Estimated | ||
| Ratio of symptomatic infection | 0.5 | 0.4022 | 0.9409 | Estimated | ||
| Transition rate of exposed individuals to the infected class | ||||||
| Rate at which the quarantined uninfected contacts were released into the wider community | ||||||
| Initial transition rate of symptomatic infected individuals to the quarantined infected class | 0.12 (Est) | 0.1326 | – | |||
| Fastest diagnosis rate | 0.50 | 0.50 | – | Estimated | ||
| Exponential decreasing rate of diagnosis rate | 0.2410 | 0.10 | – | Estimated | ||
| Constant transition rate of symptomatic infected individuals to the quarantined infected class | – | – | 0.651 | Estimated | ||
| Recovery rate of asymptotic infected individuals | 0.1397 | 0.1397 | 0.1397 | |||
| Recovery rate of quarantined infected individuals at initial time | 0.001 | – | – | Estimated | ||
| Fastest recovery rate of quarantined infected individual | 0.2283 | – | – | Estimated | ||
| Exponential increasing rate of recovery rate of quarantined infected individuals | 0.01 | – | – | Estimated | ||
| Constant recovery rate of quarantined infected individuals | – | 0.2 | 0.2 (F) | Estimated | ||
| Disease-induced death rate | 0 (Assumed) | 0.0076 | 0.0076 (F) | Estimated | ||
| Initial values | Definitions | Estimated values | Source | |||
| Guangdong | China | Korea | ||||
| Initial susceptible population | Estimated | |||||
| Initial exposed population | 250 | 204 | Estimated | |||
| Initial infected population | 378 | 108 | Estimated | |||
| Initial asymptotical population | 100 | 395 | Estimated | |||
| Initial suspected population | 258 | 1072 | 11 (Est) | Data | ||
| Initial quarantined susceptible population | 21 (Est) | 7347 | 7123 | Data | ||
| Initial quarantined infected population | 53 | 771 | 21 | Data | ||
| Initial recovered population | 2 | 34 | 9 | Data | ||
Note that, ‘Est’ means that the parameter values are estimated by fitting the models to the data when the source column indicates that they are not. ‘F’ means that the parameter values are fixed as the same as those estimated by fitting the proposed model to the multiple source data of China.
Estimated basic reproduction number for mainland China, Guangdong province of China, Korea for various serial intervals.
| Std = 3 | E = 4 | E = 5 | E = 6 | E = 7 | E = 8 |
| Mainland China | 2.9 (2.6, 3.2) | 3.8 (3.5, 4.2) | 5.4 (4.9, 6.0) | 7.8 (7.1, 8.6) | 11.1 (10.0, 12.2) |
| Guangdong | 2.4 (2.1, 2.7) | 3.0 (2.6, 3.3) | 3.8 (3.4, 4.3) | 5.1 (4.5, 5.8) | 6.9 (6.1, 7.8) |
| South Korea | 2.1 (2.0, 2.2) | 2.6 (2.5, 2.7) | 3.4 (3.2, 3.5) | 4.5 (4.3, 4.7) | 6.0 (5.7, 6.3) |
| Std = 4 | E = 4 | E = 5 | E = 6 | E = 7 | E = 8 |
| Mainland China | 2.8 (2.5, 3.1) | 3.4 (3.1, 3.7) | 4.4 (4.0, 4.9) | 6.0 (5.4, 6.6) | 8.4 (7.6, 9.2) |
| Guangdong | 2.4 (2.1, 2.7) | 2.8 (2.5, 3.1) | 3.4 (3.0, 3.9) | 4.4 (3.9, 4.9) | 5.8 (5.1, 6.5) |
| South Korea | 2.1 (2.0, 2.1) | 2.4 (2.3, 2.5) | 3.0 (2.8, 3.1) | 3.8 (3.7, 4.0) | 5.0 (4.8, 5.3) |
| Std = 5 | E = 4 | E = 5 | E = 6 | E = 7 | E = 8 |
| Mainland China | 2.8 (2.5, 3.1) | 3.2 (2.9, 3.5) | 3.9 (3.5, 4.3) | 4.9 (4.5, 5.6) | 6.6 (5.9, 7.2) |
| Guangdong | 2.4 (2.1, 2.7) | 2.7 (2.4, 3.0) | 3.2 (2.8, 3.6) | 3.9 (3.4, 4.3) | 4.9 (4.3, 5.5) |
| South Korea | 2.1 (2.0, 2.2) | 2.3 (2.2, 2.4) | 2.7 (2.6, 2.9) | 3.4 (3.2, 3.5) | 4.3 (4.1, 4.4) |
E: mean of serial interval, Std: standard deviation of serial interval.
Fig. 3Estimated effective reproduction number over sliding weekly windows for the entire country of China, the Guangdong province of China, and Korea. The solid lines show the posterior means and the colored zones show the 95% confidence intervals; the horizontal dashed line indicates .(For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 4Model fitting results (curves marked as black) and variations in cumulative number of reported cases (A), death cases (B), quarantined cases (C) and suspected cases (D) for mainland China. (E) Variation in number of infected (asymptomatic/symptomatic) individuals with contact rate function . (F) Here the contact rate function is changed by varying the exponential decreasing rate , representing the variation in intensity of control measures. denotes the estimated baseline value of .
Fig. 6(A–B) Model fitting results and the impact of the randomness of the data set including the cumulative number of tested cases and the cumulative number of reported cases on the COVID-19 epidemic in Korea. The 95% confidence intervals have been given and the mean curve is marked as black. The red cycles denote the real data. (C–D) Sensitivity analysis. The impact of the diagnose rate on the cumulative confirmed cases and the infected populations in South Korea. Here, denotes the estimated baseline value of the diagnose rate.. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 7Model fitting results (curves marked as green) and variations in cumulative number of reported cases (A), recovery cases (B), and suspected cases (C) for Guangdong province. (D) Variation in the effective reproduction number with parameter in contact rate function . Here the contact rate function is changed by varying the exponential decreasing rate , representing the variation in intensity of control measures. denotes the estimated baseline value for parameter .. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 8Goodness of fit (green curves) and variations in cumulative number of reported cases (A), recovery cases (B), and suspected cases (C) for Guangdong province. (D) Variation in the effective reproduction number with parameter in detection rate function . Here the detection rate function is changed by varying the exponential decreasing rate , representing the variation in intensity of control measures. denotes the estimated baseline value of .. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Fig. 5Model fitting results (curves marked as black) and variations in cumulative number of reported cases (A), cumulative number of death cases (B), quarantined cases (C) and suspected cases (D) for mainland China. (E) Variation in number of infected (asymptomatic/symptomatic) individuals with detection rate function . (F) Variation in the effective reproduction number of China. Here the detection rate function is changed by varying the exponential decreasing rate , representing the variation in intensity of control measures. denotes the estimated baseline value of .