Literature DB >> 35156311

Recent insights into the structure, function, and regulation of the eukaryotic transfer RNA splicing endonuclease complex.

Cassandra K Hayne1, Tanae A Lewis2, Robin E Stanley1.   

Abstract

The splicing of transfer RNA (tRNA) introns is a critical step of tRNA maturation, for intron-containing tRNAs. In eukaryotes, tRNA splicing is a multi-step process that relies on several RNA processing enzymes to facilitate intron removal and exon ligation. Splicing is initiated by the tRNA splicing endonuclease (TSEN) complex which catalyzes the excision of the intron through its two nuclease subunits. Mutations in all four subunits of the TSEN complex are linked to a family of neurodegenerative and neurodevelopmental diseases known as pontocerebellar hypoplasia (PCH). Recent studies provide molecular insights into the structure, function, and regulation of the eukaryotic TSEN complex and are beginning to illuminate how mutations in the TSEN complex lead to neurodegenerative disease. Using new advancements in the prediction of protein structure, we created a three-dimensional model of the human TSEN complex. We review functions of the TSEN complex beyond tRNA splicing by highlighting recently identified substrates of the eukaryotic TSEN complex and discuss mechanisms for the regulation of tRNA splicing, by enzymes that modify cleaved tRNA exons and introns. Finally, we review recent biochemical and animal models that have worked to address the mechanisms that drive PCH and synthesize these studies with previous studies to try to better understand PCH pathogenesis. This article is categorized under: RNA Processing > tRNA Processing RNA in Disease and Development > RNA in Disease RNA Interactions with Proteins and Other Molecules > Protein-RNA Recognition. Published 2022. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  CLP1; PCH; TSEN complex; tRNA processing; tRNA splicing

Mesh:

Substances:

Year:  2022        PMID: 35156311      PMCID: PMC9465713          DOI: 10.1002/wrna.1717

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.349


  109 in total

1.  Crystal structure of a dimeric archaeal splicing endonuclease.

Authors:  H Li; J Abelson
Journal:  J Mol Biol       Date:  2000-09-22       Impact factor: 5.469

2.  Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.

Authors:  Ender Karaca; Stefan Weitzer; Davut Pehlivan; Hiroshi Shiraishi; Tasos Gogakos; Toshikatsu Hanada; Shalini N Jhangiani; Wojciech Wiszniewski; Marjorie Withers; Ian M Campbell; Serkan Erdin; Sedat Isikay; Luis M Franco; Claudia Gonzaga-Jauregui; Tomasz Gambin; Violet Gelowani; Jill V Hunter; Gozde Yesil; Erkan Koparir; Sarenur Yilmaz; Miguel Brown; Daniel Briskin; Markus Hafner; Pavel Morozov; Thalia A Farazi; Christian Bernreuther; Markus Glatzel; Siegfried Trattnig; Joachim Friske; Claudia Kronnerwetter; Matthew N Bainbridge; Alper Gezdirici; Mehmet Seven; Donna M Muzny; Eric Boerwinkle; Mustafa Ozen; Tim Clausen; Thomas Tuschl; Adnan Yuksel; Andreas Hess; Richard A Gibbs; Javier Martinez; Josef M Penninger; James R Lupski
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

3.  A conserved lysine residue in the crenarchaea-specific loop is important for the crenarchaeal splicing endonuclease activity.

Authors:  Maho Okuda; Tomoo Shiba; Daniel-Ken Inaoka; Kiyoshi Kita; Genji Kurisu; Shigeru Mineki; Shigeharu Harada; Yoh-Ichi Watanabe; Shigeo Yoshinari
Journal:  J Mol Biol       Date:  2010-11-02       Impact factor: 5.469

Review 4.  Controlling translation via modulation of tRNA levels.

Authors:  Jeremy E Wilusz
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-04-28       Impact factor: 9.957

5.  Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop.

Authors:  Akira Hirata; Tsubasa Kitajima; Hiroyuki Hori
Journal:  Nucleic Acids Res       Date:  2011-08-16       Impact factor: 16.971

6.  Impact of intron removal from tRNA genes on Saccharomyces cerevisiae.

Authors:  Sachiko Hayashi; Shunsuke Mori; Takeo Suzuki; Tsutomu Suzuki; Tohru Yoshihisa
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

7.  Molecular determinants of metazoan tricRNA biogenesis.

Authors:  Casey A Schmidt; Joseph D Giusto; Alicia Bao; Anita K Hopper; A Gregory Matera
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

8.  Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease.

Authors:  Shigeo Yoshinari; Tomoo Shiba; Daniel-Ken Inaoka; Takashi Itoh; Genji Kurisu; Shigeharu Harada; Kiyoshi Kita; Yoh-ichi Watanabe
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

9.  X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.

Authors:  Akira Hirata; Kosuke Fujishima; Ryota Yamagami; Takuya Kawamura; Jillian F Banfield; Akio Kanai; Hiroyuki Hori
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

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