Literature DB >> 35154873

Deep learning-based single-shot autofocus method for digital microscopy.

Jun Liao1,2, Xu Chen1, Ge Ding1, Pei Dong1, Hu Ye1, Han Wang1, Yongbing Zhang2, Jianhua Yao1.   

Abstract

Digital pathology is being transformed by artificial intelligence (AI)-based pathological diagnosis. One major challenge for correct AI diagnoses is to ensure the focus quality of captured images. Here, we propose a deep learning-based single-shot autofocus method for microscopy. We use a modified MobileNetV3, a lightweight network, to predict the defocus distance with a single-shot microscopy image acquired at an arbitrary image plane without secondary camera or additional optics. The defocus prediction takes only 9 ms with a focusing error of only ∼1/15 depth of field. We also provide implementation examples for the augmented reality microscope and the whole slide imaging (WSI) system. Our proposed technique can perform real-time and accurate autofocus which will not only support pathologists in their daily work, but also provide potential applications in the life sciences, material research, and industrial automatic detection.
© 2021 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.

Entities:  

Year:  2021        PMID: 35154873      PMCID: PMC8803042          DOI: 10.1364/BOE.446928

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  21 in total

1.  Use of whole slide imaging in surgical pathology quality assurance: design and pilot validation studies.

Authors:  Jonhan Ho; Anil V Parwani; Drazen M Jukic; Yukako Yagi; Leslie Anthony; John R Gilbertson
Journal:  Hum Pathol       Date:  2006-03       Impact factor: 3.466

2.  Dynamic autofocus for continuous-scanning time-delay-and-integration image acquisition in automated microscopy.

Authors:  Miguel E Bravo-Zanoguera; Casey A Laris; Lam K Nguyen; Mike Oliva; Jeffrey H Price
Journal:  J Biomed Opt       Date:  2007 May-Jun       Impact factor: 3.170

3.  Simple and robust image-based autofocusing for digital microscopy.

Authors:  Siavash Yazdanfar; Kevin B Kenny; Krenar Tasimi; Alex D Corwin; Elizabeth L Dixon; Robert J Filkins
Journal:  Opt Express       Date:  2008-06-09       Impact factor: 3.894

4.  Single-frame rapid autofocusing for brightfield and fluorescence whole slide imaging.

Authors:  Jun Liao; Liheng Bian; Zichao Bian; Zibang Zhang; Charmi Patel; Kazunori Hoshino; Yonina C Eldar; Guoan Zheng
Journal:  Biomed Opt Express       Date:  2016-10-27       Impact factor: 3.732

Review 5.  Digital imaging in pathology: whole-slide imaging and beyond.

Authors:  Farzad Ghaznavi; Andrew Evans; Anant Madabhushi; Michael Feldman
Journal:  Annu Rev Pathol       Date:  2012-11-15       Impact factor: 23.472

Review 6.  Autofocusing technologies for whole slide imaging and automated microscopy.

Authors:  Zichao Bian; Chengfei Guo; Shaowei Jiang; Jiakai Zhu; Ruihai Wang; Pengming Song; Zibang Zhang; Kazunori Hoshino; Guoan Zheng
Journal:  J Biophotonics       Date:  2020-09-18       Impact factor: 3.207

7.  An augmented reality microscope with real-time artificial intelligence integration for cancer diagnosis.

Authors:  Po-Hsuan Cameron Chen; Krishna Gadepalli; Robert MacDonald; Yun Liu; Shiro Kadowaki; Kunal Nagpal; Timo Kohlberger; Jeffrey Dean; Greg S Corrado; Jason D Hipp; Craig H Mermel; Martin C Stumpe
Journal:  Nat Med       Date:  2019-08-12       Impact factor: 53.440

8.  Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning.

Authors:  Yichen Wu; Yair Rivenson; Hongda Wang; Yilin Luo; Eyal Ben-David; Laurent A Bentolila; Christian Pritz; Aydogan Ozcan
Journal:  Nat Methods       Date:  2019-11-04       Impact factor: 28.547

9.  Evaluation and development of deep neural networks for image super-resolution in optical microscopy.

Authors:  Chang Qiao; Di Li; Yuting Guo; Chong Liu; Tao Jiang; Qionghai Dai; Dong Li
Journal:  Nat Methods       Date:  2021-01-21       Impact factor: 28.547

10.  Autofocus methods of whole slide imaging systems and the introduction of a second-generation independent dual sensor scanning method.

Authors:  Michael C Montalto; Richard R McKay; Robert J Filkins
Journal:  J Pathol Inform       Date:  2011-10-19
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