| Literature DB >> 35135350 |
Xuankun Li1, Chris A Hamilton1,2, Ryan St Laurent1,3, Liliana Ballesteros-Mejia4,5, Amanda Markee1, Jean Haxaire4, Rodolphe Rougerie4, Ian J Kitching6, Akito Y Kawahara1,7,8.
Abstract
The regions of the Andes and Caribbean-Mesoamerica are both hypothesized to be the cradle for many Neotropical lineages, but few studies have fully investigated the dynamics and interactions between Neotropical bioregions. The New World hawkmoth genus Xylophanes is the most taxonomically diverse genus in the Sphingidae, with the highest endemism and richness in the Andes and Caribbean-Mesoamerica. We integrated phylogenomic and DNA barcode data and generated the first time-calibrated tree for this genus, covering 93.8% of the species diversity. We used event-based likelihood ancestral area estimation and biogeographic stochastic mapping to examine the speciation and dispersal dynamics of Xylophanes across bioregions. We also used trait-dependent diversification models to compare speciation and extinction rates of lineages associated with different bioregions. Our results indicate that Xylophanes originated in Caribbean-Mesoamerica in the Late Miocene, and immediately diverged into five major clades. The current species diversity and distribution of Xylophanes can be explained by two consecutive phases. In the first phase, the highest Xylophanes speciation and emigration rates occurred in the Caribbean-Mesoamerica, and the highest immigration rates occurred in the Andes, whereas in the second phase the highest immigration rates were found in Amazonia, and the Andes had the highest speciation and emigration rates.Entities:
Keywords: DNA barcode; Sphingidae; biogeography; neotropical; phylogenomic
Mesh:
Year: 2022 PMID: 35135350 PMCID: PMC8826137 DOI: 10.1098/rspb.2021.2435
Source DB: PubMed Journal: Proc Biol Sci ISSN: 0962-8452 Impact factor: 5.349
Figure 1(a) Map of the Americas and the defined bioregions based on distribution data of Xylophanes. The delineated bioregions are mainly based on [48]. (b) Ancestral area estimates for Xylophanes under the dispersal–extinction–cladogenesis model and constrained dispersal rates (DEC, M1). The estimation was performed with BioGeoBEARS, based on the chronogram generated using BEAST shown in electronic supplementary material, appendix S4. Scale is in Ma. Distribution of each species is mapped to the right of the chronogram. A single most probable ancestral area is mapped at each node. Maps below the scale are modified from Hoorn et al. [49] showing palaeogeographical models of two time slices used in the constrained analysis. Left: 7–11 Ma, Panama Isthmus open, Acre system present and northern Andes undeveloped; right: 7 Ma to the present, Panama Isthmus closed and northern Andes developed. (Online version in colour.)
Dispersal rates matrix between each pair of biogeographic areas considered and for the two time slices used in our historical biogeography analysis. Basic dispersal rates: 0.5 = regions are contiguous; 0.1 = two regions separated by another; 0.01 = two regions separated by more than two regions. Additional low dispersal rates: 0.1 = two regions separated by water; 0.01 = two regions separated by water and other regions. Additional high dispersal rates: 0.7 = between undeveloped nothern Andes and mesoamerican low lands (11–7 Ma).
| manual_dispersal_multipliers | ||||||
|---|---|---|---|---|---|---|
| A | B | C | D | E | F | |
| 7 Ma to present | ||||||
| A | 1 | 0.5 | 0.1 | 0.01 | 0.1 | 0.01 |
| B | 0.5 | 1 | 0.5 | 0.1 | 0.5 | 0.01 |
| C | 0.1 | 0.5 | 1 | 0.5 | 0.5 | 0.1 |
| D | 0.01 | 0.1 | 0.5 | 1 | 0.5 | 0.5 |
| E | 0.1 | 0.5 | 0.5 | 0.5 | 1 | 0.1 |
| F | 0.01 | 0.01 | 0.1 | 0.5 | 0.1 | 1 |
| 11–7 Ma | ||||||
| A | 1 | 0.5 | 0.01 | 0.01 | 0.01 | 0.01 |
| B | 0.5 | 1 | 0.5 | 0.1 | 0.7 | 0.01 |
| C | 0.01 | 0.5 | 1 | 0.1 | 0.5 | 0.01 |
| D | 0.01 | 0.1 | 0.1 | 1 | 0.5 | 0.5 |
| E | 0.01 | 0.7 | 0.5 | 0.5 | 1 | 0.1 |
| F | 0.01 | 0.01 | 0.01 | 0.5 | 0.1 | 1 |
Figure 2Summary of major Xylophanes dispersal events, average number of dispersal events between two areas based on 100 000 biogeographic stochastic mappings under the DEC model in BioGeoBEARS. (a) The highest emigration and the highest immigration of each area are summarized on the map. The width and shape of lines represent the estimated average number of dispersal events. (b) Bar chart showing average number of emigration and immigration events of each area. Complete average dispersal events between each type shown in electronic supplementary material, appendix S5. (Online version in colour.)
Marginal-likelihood estimate (MLE) scores for various BEAST analyses performed for this study, and estimated ages (in Ma) for Xylophanes crown nodes for each tree prior/clock scheme in BEAST. Notes: SS, stepping-stone sampling marginal-likelihood estimation; PS, path-sampling marginal-likelihood estimation; median post-burn-in divergence times in millions of years (95% credibility interval).
| analysis | tree model | clock model | MLE SS | MLE PS | crown |
|---|---|---|---|---|---|
| A1 | birth–death | 1 ULRC | −157 592.8747 | −157593.5007 | 13.1023 (10.8207, 15.0035) |
| A2 | Yule | 1 ULRC | −157589.6111 | −157589.9523 | 13.1493 (10.9506, 14.9813) |
| A3 | birth–death | 3 ULRC | −150523.204 | −150523.6057 | 11.4704 (9.4005–13.6747) |
| A4 | Yule | 3 ULRC | −150519.484 | −150519.9143 | 11.6692 (9.6526–13.7525) |
| A5 | birth–death | 11 ULRC | −149066.5954 | −149066.1731 | 8.5302 (7.8203–9.4886) |
| A6 | Yule | 11 ULRC | −149074.3488 | −149074.0018 | 8.9603 (7.9862–10.0528) |
Results of the BioGeoBEARS analyses.
| model | palaeogeographical constraint | LnL | numparams | d | e | j | AIC | △AIC | AIC_wt | AICc | △AICc | AICc_wt |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DEC | unconstrained | −387.46 | 2 | 0.05 | 0.00 | 0.00 | 778.93 | 7.48 | 2.32 × 10−2 | 779.02 | 7.48 | 2.32 × 10−2 |
| DIVALIKE | unconstrained | −509.99 | 2 | 0.01 | 0.01 | 0.00 | 1023.98 | 252.54 | 1.42 × 10−55 | 1024.07 | 252.54 | 1.42 × 10−55 |
| BAYAREALIKE | unconstrained | −441.26 | 2 | 0.04 | 0.25 | 0.00 | 886.52 | 115.07 | 1.00 × 10−25 | 886.61 | 115.07 | 1.00 × 10−25 |
| DEC | constrained | −383.72 | 2 | 0.16 | 0.00 | 0.00 | 771.44 | 0.00 | 9.77 × 10−1 | 771.54 | 0.00 | 9.77 × 10−1 |
| DIVALIKE | constrained | −397.05 | 2 | 0.20 | 0.00 | 0.00 | 798.10 | 26.66 | 1.59 × 10−6 | 798.20 | 26.66 | 1.59 × 10−6 |
| BAYAREALIKE | constrained | −434.36 | 2 | 0.14 | 0.27 | 0.00 | 872.71 | 101.27 | 9.99 × 10−23 | 872.81 | 101.27 | 9.99 × 10−23 |
Figure 3Dispersal rates through time based on 100 000 biogeographic stochastic mappings under the DEC model in BioGeoBEARS. Rates are displayed for selected pairs of areas. Source lines are the median values; coloured ribbons are the lower and upper quartiles (0.25 and 0.75 quantiles). (Online version in colour.)
Figure 4Within-area dispersal and speciation rates through time of Caribbean-Mesoamerica based on 100 000 biogeographic stochastic mappings under the DEC model in BioGeoBEARS. Type lines are the median values; coloured ribbons are the lower and upper quartiles (0.25 and 0.75 quantiles). (Online version in colour.)
Figure 5Within-area dispersal and speciation rates through time of Amazonia, Andes and Atlantic Forest based on 100 000 biogeographic stochastic mappings under the DEC model in BioGeoBEARS. Type lines are the median values; coloured ribbons are the lower and upper quartiles (0.25 and 0.75 quantiles). (Online version in colour.)