Literature DB >> 35134239

Transcription factor dynamics in plants: Insights and technologies for in vivo imaging.

Yuan Zhang1,2, Yuqing Lu1,2, Hafez El Sayyed3, Jiahui Bian1,2, Jinxing Lin1,2, Xiaojuan Li1,2.   

Abstract

Biochemical and genetic approaches have been extensively used to study transcription factor (TF) functions, but their dynamic behaviors and the complex ways in which they regulate transcription in plant cells remain unexplored, particularly behaviors such as translocation and binding to DNA. Recent developments in labeling and imaging techniques provide the necessary sensitivity and resolution to study these behaviors in living cells. In this review, we present an up-to-date portrait of the dynamics and regulation of TFs under physiologically relevant conditions and then summarize recent advances in fluorescent labeling strategies and imaging techniques. We then discuss future prospects and challenges associated with the application of these techniques to examine TFs' intricate dance in living plants. © American Society of Plant Biologists 2022. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Year:  2022        PMID: 35134239      PMCID: PMC9070795          DOI: 10.1093/plphys/kiac042

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.005


  147 in total

1.  Single-molecule fluorescence imaging to quantify membrane protein dynamics and oligomerization in living plant cells.

Authors:  Xiaohua Wang; Xiaojuan Li; Xin Deng; Doan-Trung Luu; Christophe Maurel; Jinxing Lin
Journal:  Nat Protoc       Date:  2015-11-19       Impact factor: 13.491

2.  Fluorescence cross-correlation spectroscopy in living cells.

Authors:  Kirsten Bacia; Sally A Kim; Petra Schwille
Journal:  Nat Methods       Date:  2006-02       Impact factor: 28.547

3.  Multiscale spatial organization of RNA polymerase in Escherichia coli.

Authors:  Ulrike Endesfelder; Kieran Finan; Seamus J Holden; Peter R Cook; Achillefs N Kapanidis; Mike Heilemann
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

4.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.

Authors:  S W Hell; J Wichmann
Journal:  Opt Lett       Date:  1994-06-01       Impact factor: 3.776

Review 5.  Transcription regulation by the Mediator complex.

Authors:  Julie Soutourina
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-06       Impact factor: 94.444

6.  Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

Authors:  O G Berg; M Ehrenberg
Journal:  Biophys Chem       Date:  1982-04       Impact factor: 2.352

Review 7.  Advances in fluorescence labeling strategies for dynamic cellular imaging.

Authors:  Kevin M Dean; Amy E Palmer
Journal:  Nat Chem Biol       Date:  2014-07       Impact factor: 15.040

8.  Dual-color 3D-dSTORM colocalization and quantification of ROXY1 and RNAPII variants throughout the transcription cycle in root meristem nuclei.

Authors:  Lucia Maß; Michael Holtmannspötter; Sabine Zachgo
Journal:  Plant J       Date:  2020-10-05       Impact factor: 6.417

9.  Different Expressions of HIF-1α and Metabolism in Brain and Major Visceral Organs of Acute Hypoxic Mice.

Authors:  Lu Xu; Hua Song; Qi Qiu; Ting Jiang; Pingyun Ge; Zaiji Su; Wenhui Ma; Ran Zhang; Caihua Huang; Shanhua Li; Donghai Lin; Jiaxing Zhang
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

10.  Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space.

Authors:  Zhen Liu; Dong Xing; Qian Peter Su; Yun Zhu; Jiamei Zhang; Xinyu Kong; Boxin Xue; Sheng Wang; Hao Sun; Yile Tao; Yujie Sun
Journal:  Nat Commun       Date:  2014-07-17       Impact factor: 14.919

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