Literature DB >> 35130281

A proximity-based in silico approach to identify redox-labile disulfide bonds: The example of FVIII.

Andrea Arsiccio1, Clive Metcalfe2, Roberto Pisano1, Sanj Raut2, Carmen Coxon2.   

Abstract

Allosteric disulfide bonds permit highly responsive, transient 'switch-like' properties that are ideal for processes like coagulation and inflammation that require rapid and localised responses to damage or injury. Haemophilia A (HA) is a rare bleeding disorder managed with exogenous coagulation factor(F) VIII products. FVIII has eight disulfide bonds and is known to be redox labile, but it is not known how reduction/oxidation affects the structure-function relationship, or its immunogenicity-a serious complication for 30% severe HA patients. Understanding how redox-mediated changes influence FVIII can inform molecular engineering strategies aimed at improving activity and stability, and reducing immunogenicity. FVIII is a challenging molecule to work with owing to its poor expression and instability so, in a proof-of-concept study, we used molecular dynamics (MD) to identify which disulfide bonds were most likely to be reduced and how this would affect structure/function; results were then experimentally verified. MD identified Cys1899-Cys1903 disulfide as the most likely to undergo reduction based on energy and proximity criteria. Further MD suggested this reduction led to a more open conformation. Here we present our findings and highlight the value of MD approaches.

Entities:  

Mesh:

Year:  2022        PMID: 35130281      PMCID: PMC8820644          DOI: 10.1371/journal.pone.0262409

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  55 in total

1.  Structure of the regulatory hyaluronan binding domain in the inflammatory leukocyte homing receptor CD44.

Authors:  Peter Teriete; Suneale Banerji; Martin Noble; Charles D Blundell; Alan J Wright; Andrew R Pickford; Edward Lowe; David J Mahoney; Markku I Tammi; Jan D Kahmann; Iain D Campbell; Anthony J Day; David G Jackson
Journal:  Mol Cell       Date:  2004-02-27       Impact factor: 17.970

2.  Efficient Sampling of High-Dimensional Free-Energy Landscapes with Parallel Bias Metadynamics.

Authors:  Jim Pfaendtner; Massimiliano Bonomi
Journal:  J Chem Theory Comput       Date:  2015-10-09       Impact factor: 6.006

3.  An Automated Force Field Topology Builder (ATB) and Repository: Version 1.0.

Authors:  Alpeshkumar K Malde; Le Zuo; Matthew Breeze; Martin Stroet; David Poger; Pramod C Nair; Chris Oostenbrink; Alan E Mark
Journal:  J Chem Theory Comput       Date:  2011-11-15       Impact factor: 6.006

Review 4.  Inhibition of Protein Disulfide Isomerase in Thrombosis.

Authors:  Roelof H Bekendam; Robert Flaumenhaft
Journal:  Basic Clin Pharmacol Toxicol       Date:  2016-03-23       Impact factor: 4.080

Review 5.  Encryption and decryption of tissue factor.

Authors:  V M Chen; P J Hogg
Journal:  J Thromb Haemost       Date:  2013-06       Impact factor: 5.824

Review 6.  Thioredoxin and glutaredoxin-mediated redox regulation of ribonucleotide reductase.

Authors:  Rajib Sengupta; Arne Holmgren
Journal:  World J Biol Chem       Date:  2014-02-26

Review 7.  Thiol redox control via thioredoxin and glutaredoxin systems.

Authors:  A Holmgren; C Johansson; C Berndt; M E Lönn; C Hudemann; C H Lillig
Journal:  Biochem Soc Trans       Date:  2005-12       Impact factor: 5.407

8.  An allosteric disulfide bond is involved in enhanced activation of factor XI by protein disulfide isomerase.

Authors:  M Zucker; U Seligsohn; A Yeheskel; R Mor-Cohen
Journal:  J Thromb Haemost       Date:  2016-10-20       Impact factor: 5.824

9.  Bioengineering of coagulation factor VIII for improved secretion.

Authors:  Hongzhi Z Miao; Nongnuch Sirachainan; Lisa Palmer; Phillip Kucab; Michael A Cunningham; Randal J Kaufman; Steven W Pipe
Journal:  Blood       Date:  2004-01-15       Impact factor: 22.113

10.  Crystal structure of the extracellular region of human tissue factor.

Authors:  K Harlos; D M Martin; D P O'Brien; E Y Jones; D I Stuart; I Polikarpov; A Miller; E G Tuddenham; C W Boys
Journal:  Nature       Date:  1994-08-25       Impact factor: 49.962

View more
  1 in total

Review 1.  A Review of Methodologies for the Detection, Quantitation, and Localization of Free Cysteine in Recombinant Proteins: A Focus on Therapeutic Monoclonal Antibodies.

Authors:  Clive Metcalfe
Journal:  Front Mol Biosci       Date:  2022-06-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.