| Literature DB >> 35126452 |
Zhiyu Xia1, Yufei Wang1, Fu Liu1, Hongxin Shu1, Peng Huang2,3.
Abstract
The tumor necrosis factor alpha (TNF-α) polymorphism may play an important role in chronic obstructive pulmonary disease (COPD) susceptibility. However, the results are still inconclusive. Eligible studies were searched in Cochrane Library database, EMBASE, Pudmed, Web of science, China National Knowledge Infrastructure, and Wanfang database. Finally, a total of 27 case-control studies with 3473 COPD cases and 4935 controls were included in the present analysis. We also performed trial sequential analysis (TSA) to confirm our results. Overall, association between TNF-α-308G/A polymorphism and COPD susceptibility was identified in allelic model (A vs. G, OR = 1.21, 95%CI: 1.01-1.45, p = 0.04) when smoking status was not adjusted. In ethnicity subgroup analysis, we found that the TNF-α -308G/A polymorphism was associated to COPD among Asians (GA vs. GG, OR = 1.35, 95%CI: 1.04-1.77, p = 0.02) when smoking status was not adjusted. However, no significant association was found in Asian smokers or Caucasian smokers. In conclusion, our study suggest that TNF-α-308 GA genotype is related to COPD in the Asian population. In addition, the TNF-α+489G/A, - 238G/A variants do not increase the risk of COPD. Systematic Review Registration: https://www.crd.york.ac.uk/PROSPERO/, identifier CRD42021273980.Entities:
Keywords: COPD; TNF-α; meta-analysis; single nucleotide polymorphism; trial sequential analysis
Year: 2022 PMID: 35126452 PMCID: PMC8815967 DOI: 10.3389/fgene.2021.772032
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Flowchart illustrating the search strategy for TNF-α polymorphism. and the risk of COPD.
Main characters of studies included in this meta-analysis.
| 0.5 | Country | Ethnicity | Source of control | Genotype methods | Cases/Controls | Genotype distribution | NOS | HWE | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||||||||||
| TNF-α 308 | ||||||||||||||||
| Smoking status | GG | GA | AA | Smoking status | GG | GA | AA | |||||||||
| ( | Britain | Caucasian | HB | TaqMan | 106/99 | Yes | 62 | 38 | 6 | Yes | 59 | 37 | 3 | 6 | 0.871 | |
| ( | Britain | Caucasian | HB | RCR-RFLP | 86/262 | Yes | 62 | 22 | 2 | Mixed | 181 | 74 | 7 | 8 | 0.998 | |
| 86/63 | Yes | 45 | 17 | 1 | 8 | <0.05 | ||||||||||
| ( | Japan | Asian | HB | PCR | 53/65 | Yes | 52 | 1 | 0 | Yes | 64 | 1 | 0 | 7 | 1.000 | |
| ( | Japan | Asian | HB | PCR- RFLP | 106/239 | Yes | 77 | 23 | 6 | Mixed | 209 | 22 | 8 | 7 | 0.09 | |
| 106/110 | Yes | 96 | 10 | 4 | 7 | <0.05 | ||||||||||
| ( | Netherlands | Caucasian | PB | PCR | 163/335 | Mixed | 113 | 49 | 1 | Unknown | 237 | 91 | 7 | 6 | 0.589 | |
| ( | Italy | Caucasian | HB | PCR | 63/86 | Mixed | 54 | 9 | 0 | Yes | 72 | 14 | 0 | 6 | 0.578 | |
| ( | Thailand | Asian | HB | PCR | 57/183 | Yes | 48 | 9 | 0 | Mixed | 162 | 21 | 0 | 6 | 0.585 | |
| 57/67 | Yes | 57 | 10 | 0 | 7 | 0.598 | ||||||||||
| ( | Japan | Asian | HB | PCR-RFLP | 88/61 | Yes | 86 | 2 | 0 | Yes | 61 | 0 | 0 | 6 | 1.000 | |
| Caucasian | HB | PCR-RFLP | 106/72 | Yes | 91 | 14 | 1 | Yes | 57 | 14 | 1 | 6 | 0.839 | |||
| ( | Germany | Caucasian | PB | PCR | 113/243 | Mixed | 73 | 36 | 4 | Mixed | 171 | 67 | 4 | 6 | 0.857 | |
| ( | China | Asian | PB | PCR-RFLP | 101/96 | Mixed | 90 | 10 | 1 | Mixed | 90 | 6 | 0 | 7 | 0.597 | |
| ( | Greece | Caucasian | PB | PCR | 116/202 | Mixed | 101 | 14 | 1 | Yes | 169 | 29 | 4 | 6 | 0.429 | |
| ( | Russia | Asian | HB | PCR | 319/381 | Unknown | 216 | 101 | 2 | Unknown | 273 | 103 | 5 | 7 | 0.071 | |
| ( | France | Caucasian | HB | PCR-SSP | 60/301 | Mixed | 45 | 14 | 1 | Unknown | 231 | 66 | 4 | 8 | 0.952 | |
| ( | America | Caucasian | PB | PCR | 298/125 | Yes | 220 | 67 | 11 | Yes | 105 | 18 | 2 | 7 | 0.283 | |
| ( | America | Asian | HB | PCR-RFLP | 30/115 | Mixed | 23 | 6 | 1 | Mixed | 96 | 18 | 1 | 7 | 0.838 | |
| ( | Serbia | Caucasian | PB | PCR-RFLP | 97/102 | Mixed | 79 | 17 | 1 | Mixed | 71 | 28 | 3 | 6 | 0.996 | |
| ( | China | Asian | HB | PCR-RFLP | 145/139 | Yes | 117 | 28 | 0 | Yes | 109 | 27 | 3 | 7 | 0.996 | |
| ( | India | Asian | HB | ARMS-PCR | 208/204 | Mixed | 178 | 30 | 0 | Mixed | 159 | 41 | 4 | 6 | 1.000 | |
| ( | Indonesia | Asian | HB | PCR-RFLP | 93/93 | Yes | 75 | 8 | 10 | Yes | 60 | 25 | 8 | 6 | <0.05 | |
| ( | China | Asian | HB | PCR-RFLP | 101/80 | Mixed | 73 | 25 | 3 | Mixed | 71 | 9 | 0 | 7 | 0.878 | |
| 74/46 | Yes | 53 | 19 | 2 | Yes | 42 | 4 | 0 | 7 | 0.991 | ||||||
| ( | Turkey | Caucasian | HB | PCR | 60/30 | Yes | 44 | 16 | 0 | Yes | 24 | 6 | 0 | 6 | 0.543 | |
| ( | India | Asian | PB | PCR | 55/52 | Mixed | 37 | 13 | 5 | Mixed | 36 | 14 | 2 | 7 | 0.477 | |
| ( | Mexico | Caucasian | PB | PCR | 384/674 | Yes | 342 | 42 | 0 | Yes | 641 | 31 | 2 | 8 | 0.844 | |
| ( | Indonesia | Asian | HB | PCR-RFLP | 70/35 | Unknown | 52 | 17 | 1 | Unknown | 27 | 8 | 0 | 6 | 0.837 | |
| ( | India | Asian | HB | PCR | 100/163 | Mixed | 91 | 9 | 0 | Mixed | 150 | 13 | 0 | 7 | 0.989 | |
| ( | China | Asian | HB | PCR | 198/195 | Mixed | 173 | 21 | 4 | Unknown | 186 | 9 | 0 | 7 | 0.308 | |
| — | TNF-α 489 | — | — | |||||||||||||
| Smoking status | GG | GA | AA | Smoking status | GG | GA | AA | |||||||||
| ( | Netherlands | Caucasian | PB | PCR | 157/315 | Mixed | 118 | 38 | 1 | Unknown | 264 | 45 | 6 | 6 | 0.805 | |
| ( | Japan | Asian | HB | TaqMan | 88/61 | Yes | 57 | 26 | 5 | Yes | 40 | 19 | 2 | 6 | 0.939 | |
| Caucasian | HB | TaqMan | 106/72 | Yes | 85 | 19 | 2 | Yes | 58 | 13 | 1 | 7 | 0.876 | |||
| ( | America | Caucasian | HB | PCR-RFLP | 30/115 | Mixed | 23 | 7 | 0 | Mixed | 79 | 35 | 1 | 7 | 0.514 | |
| ( | Croatia | Caucasian | HB | PCR-RFLP | 130/95 | Mixed | 87 | 38 | 5 | Mixed | 53 | 39 | 3 | 6 | 0.863 | |
|
| China | Asian | HB | PCR | 198/195 | Mixed | 140 | 46 | 12 | Unknown | 148 | 39 | 8 | 7 | 0.060 | |
| — | TNF-α 238 | — | — | |||||||||||||
| Smoking status | GG | GA | AA | Smoking status | GG | GA | AA | |||||||||
| ( | Netherlands | Caucasian | PB | PCR | 164/331 | Mixed | 151 | 13 | 0 | Unknown | 310 | 20 | 1 | 6 | 0.993 | |
| ( | Greece | Caucasian | PB | PCR | 116/208 | Unknown | 111 | 5 | 0 | Yes | 197 | 11 | 0 | 6 | 1.000 | |
| ( | France | Caucasian | HB | PCR-SSP | 60/301 | Mixed | 53 | 7 | 0 | Unknown | 276 | 23 | 2 | 7 | 0.819 | |
| ( | Indonesia | Asian | HB | PCR-RFLP | 93/93 | Yes | 85 | 4 | 4 | Yes | 89 | 1 | 3 | 6 | <0.05 | |
| ( | Mexico | Caucasian | HB | RT-PCR | 384/674 | Yes | 349 | 31 | 4 | Yes | 621 | 52 | 1 | 8 | 0.472 | |
Abbreviation: HB, hospital-based; PB, population-based.
FIGURE 2Forest plot of TNF-α-308 polymorphism and COPD risk [(A): overall for A vs. G, (B): overall for GA vs. GG].
Meta-analysis results for relationship between the TNF-α-308 polymorphism and COPD risk.; Abbreviation: CI = confidence interval, F = fixed effect model, OR = odds ratio, R = random-effect model.
| TNF-α-308 | Contrast model | Number of studies | OR (95%CI) |
| Test for heterogeneity | Analysis model | ||
|---|---|---|---|---|---|---|---|---|
| I2 (%) |
| |||||||
| Participants included | Overall | A vs. G | 25 | 1.21 (1.01, 1.45) | 0.04 | 57 | 0.00 | R |
| GA vs. GG | 25 | 1.22 (1.02, 1.45) | 0.03 | 43 | 0.01 | R | ||
| AA vs. GG | 25 | 1.18 (0.80, 1.73) | 0.41 | 0 | 0.45 | F | ||
| AA vs. GG + GA | 25 | 1.14 (0.77, 1.67) | 0.52 | 0 | 0.55 | F | ||
| GA + AA vs. GG | 25 | 1.22 (1.01, 1.48) | 0.04 | 52 | 0.00 | R | ||
| Asian | A vs. G | 14 | 1.40 (1.03, 1.89) | 0.03 | 60 | 0.00 | R | |
| GA vs. GG | 14 | 1.35 (1.04, 1.77) | 0.02 | 37 | 0.08 | R | ||
| AA vs. GG | 14 | 1.33 (0.76, 2.33) | 0.32 | 22 | 0.24 | F | ||
| AA vs. GG + GA | 14 | 1.26 (0.72, 2.21) | 0.42 | 17 | 0.29 | F | ||
| GA + AA vs. GG | 14 | 1.40 (1.04, 1.88) | 0.03 | 51 | 0.01 | R | ||
| Caucasian | A vs. G | 12 | 1.08 (0.86, 1.36) | 0.51 | 54 | 0.01 | R | |
| GA vs. GG | 12 | 1.10 (0.86, 1.42) | 0.45 | 51 | 0.02 | R | ||
| AA vs. GG | 12 | 1.05 (0.61, 1.79) | 0.87 | 0 | 0.62 | F | ||
| AA vs. GG + GA | 12 | 1.03 (0.60, 1.77) | 0.91 | 0 | 0.69 | F | ||
| GA + AA vs. GG | 12 | 1.09 (0.85, 1.41) | 0.49 | 53 | 0.01 | R | ||
| Smokers | Overall | A vs. G | 9 | 1.35 (0.97, 1.89) | 0.08 | 52 | 0.03 | R |
| GA vs. GG | 9 | 1.41 (0.99, 2.00) | 0.06 | 47 | 0.06 | R | ||
| AA vs. GG | 9 | 1.31 (0.62, 2.75) | 0.48 | 0 | 0.45 | F | ||
| AA vs. GG + GA | 9 | 1.24 (0.59, 2.60) | 0.57 | 0 | 0.49 | F | ||
| GA + AA vs. GG | 9 | 1.40 (0.98, 2.00) | 0.06 | 50 | 0.04 | R | ||
| Asian | A vs. G | 5 | 1.19 (0.80, 1.78) | 0.39 | 47 | 0.11 | F | |
| GA vs. GG | 5 | 1.32 (0.85, 2.05) | 0.21 | 17 | 0.30 | F | ||
| AA vs. GG | 5 | 0.71 (0.03, 19.93) | 0.84 | 59 | 0.12 | R | ||
| AA vs. GG + GA | 5 | 0.64 (0.03, 14.48) | 0.78 | 53 | 0.14 | R | ||
| GA + AA vs. GG | 5 | 1.27 (0.83, 1.95) | 0.27 | 37 | 0.17 | F | ||
| Caucasian | A vs. G | 5 | 1.38 (0.92, 2.07) | 0.12 | 59 | 0.05 | R | |
| GA vs. GG | 5 | 1.38 (0.84, 2.27) | 0.21 | 65 | 0.02 | R | ||
| AA vs. GG | 5 | 1.63 (0.68, 3.88) | 0.27 | 0 | 0.62 | F | ||
| AA vs. GG + GA | 5 | 1.56 (0.65, 3.71) | 0.32 | 0 | 0.65 | F | ||
| GA + AA vs. GG | 5 | 1.40 (0.88, 2.23) | 0.16 | 62 | 0.03 | R | ||
Meta-analysis results for relationship between the TNF-α+489, -238 polymorphism and COPD risk.
| SNPs | Contrast model | Subgroup | Number of studies | OR (95% CI) |
| Test for heterogeneity | Analysis model | |
|---|---|---|---|---|---|---|---|---|
| I2 (%) |
| |||||||
| TNF-α+489 | A vs. G | Overall | 5 | 1.10 (0.89, 1.35) | 0.38 | 41 | 0.15 | F |
| GA vs. GG | Overall | 5 | 1.04 (0.68, 1.57) | 0.87 | 63 | 0.03 | R | |
| AA vs. GG | Overall | 5 | 1.23 (0.66, 2.26) | 0.51 | 0 | 0.79 | F | |
| AA vs. GG + GA | Overall | 5 | 1.22 (0.67, 2.25) | 0.51 | 0 | 0.77 | F | |
| GA + AA vs. GG | Overall | 5 | 1.05 (0.73, 1.53) | 0.79 | 57 | 0.05 | R | |
| A vs. G | Asian | 2 | 1.24 (0.90, 1.71) | 0.18 | 0 | 0.64 | F | |
| GA vs. GG | Asian | 2 | 1.15 (0.77, 1.72) | 0.50 | 0 | 0.55 | F | |
| AA vs. GG | Asian | 2 | 1.62 (0.72, 3.65) | 0.24 | 0 | 0.92 | F | |
| AA vs. GG + GA | Asian | 2 | 1.57 (0.70, 3.50) | 0.27 | 0 | 0.87 | F | |
| GA + AA vs. GG | Asian | 2 | 1.22 (0.84, 1.77) | 0.30 | 0 | 0.58 | F | |
| A vs. G | Caucasian | 4 | 1.01 (0.77, 1.32) | 0.97 | 47 | 0.13 | F | |
| GA vs. GG | Caucasian | 4 | 0.97 (0.52, 1.80) | 0.92 | 71 | 0.02 | R | |
| AA vs. GG | Caucasian | 4 | 0.81 (0.30, 2.15) | 0.67 | 0 | 0.84 | F | |
| AA vs. GG + GA | Caucasian | 4 | 0.86 (0.33, 2.23) | 0.75 | 0 | 0.75 | F | |
| GA + AA vs. GG | Caucasian | 4 | 0.96 (0.56, 1.66) | 0.89 | 65 | 0.04 | R | |
| TNF-α-238 | A vs. G | Caucasian | 4 | 1.22 (0.89, 1.67) | 0.23 | 0 | 0.89 | F |
| GA vs. GG | Caucasian | 4 | 1.14 (0.81, 1.61) | 0.44 | 0 | 0.76 | F | |
| AA vs. GG | Caucasian | 4 | 2.64 (0.70, 9.93) | 0.15 | 0 | 0.40 | F | |
| AA vs. GG + GA | Caucasian | 4 | 2.59 (0.69, 9.69) | 0.16 | 0 | 0.39 | F | |
| GA + AA vs. GG | Caucasian | 4 | 1.18 (0.85, 1.65) | 0.32 | 0 | 0.87 | F | |
Abbreviation: CI, confidence interval, F = fixed effect model, OR, odds ratio, R = random-effect model.
Sensitivity analysis of the association between TNF-α-308 and COPD risk, under the allelic model in overall population.; Abbreviation: CI = confidence interval, OR = odds ratio.
| Author | OR (95%CI) | Z value |
| I2 (%) |
|---|---|---|---|---|
| Akparova | 1.21 (1.00, 1.46) | 1.94 | 0.05 | 59 |
| Chen | 1.23 (1.02, 1.49) | 2.19 | 0.03 | 57 |
| Chierakul | 1.20 (0.99, 1.45) | 1.92 | 0.06 | 59 |
| Danilko | 1.22 (1.00, 1.48) | 1.92 | 0.05 | 59 |
| Ferrarotti | 1.22 (1.01, 1.47) | 2.08 | 0.04 | 59 |
| Gingo | 1.18 (0.98, 1.43) | 1.75 | 0.08 | 57 |
| Hegab | 1.23 (1.02, 1.48) | 2.17 | 0.03 | 58 |
| Higham | 1.23 (1.02, 1.49) | 2.12 | 0.03 | 58 |
| Hsieh | 1.20 (0.99, 1.45) | 1.89 | 0.06 | 59 |
| Ishii | 1.20 (1.00, 1.45) | 2.00 | 0.05 | 59 |
| Keatings | 1.21 (1.00, 1.47) | 1.97 | 0.05 | 59 |
| Jiang | 1.20 (0.99, 1.44) | 1.87 | 0.06 | 58 |
| Kucukaycan | 1.22 (1.00, 1.49) | 2.04 | 0.04 | 58 |
| Mir | 1.21 (1.00, 1.46) | 1.99 | 0.05 | 59 |
| Partan | 1.21 (1.00, 1.46) | 1.97 | 0.05 | 59 |
| Resendiz | 1.17 (0.97, 1.40) | 1.67 | 0.09 | 53 |
| Sakao | 1.16 (0.97, 1.39) | 1.67 | 0.10 | 53 |
| Seifart | 1.20 (0.99, 1.46) | 1.87 | 0.06 | 59 |
| Shukla | 1.25 (1.05, 1.50) | 2.53 | 0.01 | 51 |
| Stankovic | 1.25 (1.04, 1.49) | 2.43 | 0.02 | 54 |
| Trajokv | 1.21 (1.00, 1.47) | 1.99 | 0.05 | 59 |
| Ozdogan | 1.20 (1.00, 1.45) | 1.94 | 0.05 | 59 |
| Papatheodorou | 1.23 (1.02, 1.49) | 2.21 | 0.03 | 57 |
| Yang | 1.17 (0.97, 1.40) | 1.72 | 0.09 | 54 |
| Yu | 1.16 (0.98, 1.39) | 1.69 | 0.09 | 53 |
FIGURE 3Sensitivity analysis of TNF-α-308 polymorphism and COPD risk (Asian population for GA vs. GG).
FIGURE 4Begg’s funnel plot of TNF-α-308 polymorphism and COPD risk (Asian population for GA vs. GG).
FIGURE 5Results of TSA with TNF-α-308 variant. The required information size was calculated based on a two-sided a = 5%, ß = 15% (power 80%), and a relative risk reduction of 20%. [(A): overall for A vs. G, (B): Asian population for GA vs. GG].