Literature DB >> 35120626

High-performance microbial opsins for spatially and temporally precise perturbations of large neuronal networks.

Savitha Sridharan1, Marta A Gajowa1, Mora B Ogando1, Uday K Jagadisan1, Lamiae Abdeladim1, Masato Sadahiro1, Hayley A Bounds2, William D Hendricks1, Toby S Turney3, Ian Tayler1, Karthika Gopakumar1, Ian Antón Oldenburg1, Stephen G Brohawn4, Hillel Adesnik5.   

Abstract

The biophysical properties of existing optogenetic tools constrain the scale, speed, and fidelity of precise optogenetic control. Here, we use structure-guided mutagenesis to engineer opsins that exhibit very high potency while retaining fast kinetics. These new opsins enable large-scale, temporally and spatially precise control of population neural activity. We extensively benchmark these new opsins against existing optogenetic tools and provide a detailed biophysical characterization of a diverse family of opsins under two-photon illumination. This establishes a resource for matching the optimal opsin to the goals and constraints of patterned optogenetics experiments. Finally, by combining these new opsins with optimized procedures for holographic photostimulation, we demonstrate the simultaneous coactivation of several hundred spatially defined neurons with a single hologram and nearly double that number by temporally interleaving holograms at fast rates. These newly engineered opsins substantially extend the capabilities of patterned illumination optogenetic paradigms for addressing neural circuits and behavior.
Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D-SHOT; ChroME; calcium imaging; holography; neural circuits; neural coding; opsins; optogenetics; two-photon; visual cortex

Mesh:

Substances:

Year:  2022        PMID: 35120626      PMCID: PMC8989680          DOI: 10.1016/j.neuron.2022.01.008

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  50 in total

1.  Three-dimensional imaging and photostimulation by remote-focusing and holographic light patterning.

Authors:  Francesca Anselmi; Cathie Ventalon; Aurélien Bègue; David Ogden; Valentina Emiliani
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-09       Impact factor: 11.205

2.  High-fidelity optical excitation of cortico-cortical projections at physiological frequencies.

Authors:  Charles A Hass; Lindsey L Glickfeld
Journal:  J Neurophysiol       Date:  2016-08-03       Impact factor: 2.714

3.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

4.  Holographic photolysis of caged neurotransmitters.

Authors:  Christoph Lutz; Thomas S Otis; Vincent DeSars; Serge Charpak; David A DiGregorio; Valentina Emiliani
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

5.  Closed-loop all-optical interrogation of neural circuits in vivo.

Authors:  Zihui Zhang; Lloyd E Russell; Adam M Packer; Oliver M Gauld; Michael Häusser
Journal:  Nat Methods       Date:  2018-11-12       Impact factor: 28.547

6.  Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation.

Authors:  Rohit Prakash; Ofer Yizhar; Benjamin Grewe; Charu Ramakrishnan; Nancy Wang; Inbal Goshen; Adam M Packer; Darcy S Peterka; Rafael Yuste; Mark J Schnitzer; Karl Deisseroth
Journal:  Nat Methods       Date:  2012-12       Impact factor: 28.547

7.  ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Authors:  John Y Lin; Per Magne Knutsen; Arnaud Muller; David Kleinfeld; Roger Y Tsien
Journal:  Nat Neurosci       Date:  2013-09-01       Impact factor: 24.884

8.  Independent optical excitation of distinct neural populations.

Authors:  Nathan C Klapoetke; Yasunobu Murata; Sung Soo Kim; Stefan R Pulver; Amanda Birdsey-Benson; Yong Ku Cho; Tania K Morimoto; Amy S Chuong; Eric J Carpenter; Zhijian Tian; Jun Wang; Yinlong Xie; Zhixiang Yan; Yong Zhang; Brian Y Chow; Barbara Surek; Michael Melkonian; Vivek Jayaraman; Martha Constantine-Paton; Gane Ka-Shu Wong; Edward S Boyden
Journal:  Nat Methods       Date:  2014-02-09       Impact factor: 28.547

9.  Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Features Determining Perceptual Detection.

Authors:  Jonathan V Gill; Gilad M Lerman; Hetince Zhao; Benjamin J Stetler; Dmitry Rinberg; Shy Shoham
Journal:  Neuron       Date:  2020-08-24       Impact factor: 18.688

10.  High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics.

Authors:  Thomas Mager; David Lopez de la Morena; Verena Senn; Johannes Schlotte; Anna D Errico; Katrin Feldbauer; Christian Wrobel; Sangyong Jung; Kai Bodensiek; Vladan Rankovic; Lorcan Browne; Antoine Huet; Josephine Jüttner; Phillip G Wood; Johannes J Letzkus; Tobias Moser; Ernst Bamberg
Journal:  Nat Commun       Date:  2018-05-01       Impact factor: 14.919

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  10 in total

Review 1.  Fluorescence imaging of large-scale neural ensemble dynamics.

Authors:  Tony Hyun Kim; Mark J Schnitzer
Journal:  Cell       Date:  2022-01-06       Impact factor: 41.582

2.  Three-dimensional multi-site random access photostimulation (3D-MAP).

Authors:  Yi Xue; Laura Waller; Hillel Adesnik; Nicolas Pégard
Journal:  Elife       Date:  2022-02-14       Impact factor: 8.140

Review 3.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

Review 4.  Advances in computer-generated holography for targeted neuronal modulation.

Authors:  M Hossein Eybposh; Vincent R Curtis; Jose Rodríguez-Romaguera; Nicolas C Pégard
Journal:  Neurophotonics       Date:  2022-06-16       Impact factor: 4.212

5.  Ultra-parallel label-free optophysiology of neural activity.

Authors:  Rishyashring R Iyer; Yuan-Zhi Liu; Carlos A Renteria; Brian E Tibble; Honggu Choi; Mantas Žurauskas; Stephen A Boppart
Journal:  iScience       Date:  2022-04-27

Review 6.  Optogenetic Methods to Investigate Brain Alterations in Preclinical Models.

Authors:  Marco Brondi; Matteo Bruzzone; Claudia Lodovichi; Marco Dal Maschio
Journal:  Cells       Date:  2022-06-05       Impact factor: 7.666

7.  Potent optogenetics.

Authors:  Nina Vogt
Journal:  Nat Methods       Date:  2022-03       Impact factor: 28.547

8.  Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.

Authors:  Koichiro E Kishi; Yoon Seok Kim; Masahiro Fukuda; Masatoshi Inoue; Tsukasa Kusakizako; Peter Y Wang; Charu Ramakrishnan; Eamon F X Byrne; Elina Thadhani; Joseph M Paggi; Toshiki E Matsui; Keitaro Yamashita; Takashi Nagata; Masae Konno; Sean Quirin; Maisie Lo; Tyler Benster; Tomoko Uemura; Kehong Liu; Mikihiro Shibata; Norimichi Nomura; So Iwata; Osamu Nureki; Ron O Dror; Keiichi Inoue; Karl Deisseroth; Hideaki E Kato
Journal:  Cell       Date:  2022-02-02       Impact factor: 66.850

Review 9.  Advantages, Pitfalls, and Developments of All Optical Interrogation Strategies of Microcircuits in vivo.

Authors:  Stylianos Papaioannou; Paolo Medini
Journal:  Front Neurosci       Date:  2022-06-28       Impact factor: 5.152

10.  Cryo-EM structures of the channelrhodopsin ChRmine in lipid nanodiscs.

Authors:  Kyle Tucker; Savitha Sridharan; Hillel Adesnik; Stephen G Brohawn
Journal:  Nat Commun       Date:  2022-08-17       Impact factor: 17.694

  10 in total

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