| Literature DB >> 35116309 |
Jia Xu1, Hui-Wen Pan2, Xue-Qi Wang1, Ke-Ping Chen1.
Abstract
OBJECTIVE: To describe and discuss the progression of the non-coding RNA as biomarkers in early esophageal cancer.Entities:
Keywords: Esophageal cancer; clinical treatment; diagnosis; non-coding RNA
Year: 2021 PMID: 35116309 PMCID: PMC8798506 DOI: 10.21037/tcr-21-687
Source DB: PubMed Journal: Transl Cancer Res ISSN: 2218-676X Impact factor: 1.241
Figure 1Age-standardized incidence and mortality rates (world) in 2020. (A) Age-standardized incidence rates (world) in 2020, esophagus, both sexes, all age, ASR (World) per100,000; (B) Age-standardized mortality rates (world) in 2020, esophagus, both sexes, all age, ASR (World) per100,000. Note: all data cite from GLOBOCAN2020 database (http://gco.iarc.fr/today).
Figure 2Estimated number of new and death cases of high-incidence countries in 2020, both sexes and all ages. Note: data cite from GLOBOCAN2020 database (IARC website, http://gco.iarc.fr/today).
Figure 3Flowchart of article selection process.
The Potential algorithm of therapy for extended locally advanced esophageal cancer and salvage treatment
| Early esophageal cancer | Extended esophageal cancer | Locally advanced esophageal cancer | Salvage treatment for local failure of esophageal cancer | |
|---|---|---|---|---|
| Algorithm of therapy | esophagectomy ( | nimotuzumab combined with chemotherapy ( | DCF therapy with prophylactic administration of pegfilgrastim ( | Salvage surgery ( |
| ESD (miR-205 levels may serve as a marker) ( | HiPorfin Photodynamic Therapy ( | targeted therapy: Gefitinib ( | ER ( | |
| EMR (remove lesions only smaller than 2 cm | combined immunotherapy and chemotherapy ( | CRT ( | repeated tPDT ( |
DCF, Docetaxel, cisplatin, and 5-FU; ER, endoscopic resection; CRT, Chemoradiotherapy; tPDT, talaporfin sodium photodynamic therapy; ESD, endoscopic submucosal dissection; EMR, endoscopic mucosal resection.
Figure 4Common methods for the detection of non-coding RNA biomarkers.
Comparison of the advantages and disadvantages of RNA-seq and microarray
| RNA-seq | Microarray | |
|---|---|---|
| Afford | Company | Laboratory, company |
| Technology limitation | Short sequence reads, not map uniquely to a single gene or isoform (mapping uncertainty), | Background hybridization, cross-hybridization, specific hybridization, probe design |
| Testing dynamic range | Wider (low to extremely abundant, more sensitive, accurate) | Cannot distinguish ‘‘no’’ from ‘‘low’’ expression. |
| Data analysis | Far from mature, vulnerable to general biases and errors, the absence of a gold standard for analysis | Relatively simple, faster |
| Cost | Expensive | Cheap |
| Advantage | Can discover unknown transcripts and rare transcripts, higher detection throughput, highly reproducible, with relatively little technical variation | Can provide highly consistent data, the analysis software is quite mature, and give clinical diagnostic value |
List of common lncRNA biomarkers for esophageal cancer
| Name | Expression | Mechanism | Biomarker potency | Site of detection | Detection method | Reference |
|---|---|---|---|---|---|---|
| LINC00152 | ↑ ( | Interacts with EZH2, positively regulate the expression of ZEB1, enhance the EMT of EC cells ( | (i), (iii) | Whole blood ( | RT-qPCR, Tumor formation study, | ( |
| HOTTIP | ↑ | Up-regulated snail1 by competitively binding miR-30b, regulate the Hottip-miR-30b-HOXA13 axis in ESCC | (i), (ii), (iii) | Tumor, cell line (a) | RT-qPCR, Dual-luciferase reporter assay | ( |
| FOXD2-AS1 | ↑ ( | Regulate miR-145-5p/CDK6 axis, significantly inhibit the proliferation and invasion of esophageal cancer cells ( | (i), (iii), (iv) ( | Tumor (a) | RT-qPCR, WB | ( |
| HOTAIR | ↑ ( | HOTAIR decreased WIF-1 expression, regulate HOTAIR/WIF-1 axis ( | (ii) ( | Tumor, serum (a) | Microarray, RT-qPCR | ( |
| PVT1 | ↑ | Competitively bind miRNA- 203, regulate the expression of human recombinant LIM and SH3 protein 1 in ESCC | (ii) | tumor, mice (a, b) | RT-qPCR, Immunohistochemical, Tumor formation study, | ( |
| AK001796 | ↑ | Regulate the MDM2/P53 signal pathway in ESCC | (ii) | Tumor, mice (a, b) | RT-qPCR, RT-PCR, Tumor formation study, | ( |
| MEG3 | ↓ | Interact with MI R-4261, inhabit recombinant DKK2 and block Wnt/β-catenin signaling, inhibit the occurrence and development of ESCC | (i), (ii) | Tumor, mice (a, b) | RT-qPCR, Luciferase reporter assay, WB, Tumor formation study, | ( |
| LncRNA-TUSC7 | ↓ | bound to miR-224, miR-224 specifically bound to DESC1, DESC1 inhibited chemotherapy resistance of ESCC cells via EGFR/AKT | (i), (iii), (iv) | Tumor (a) | RT-qPCR, bioinformatics | ( |
↑, represents up-regulated gene expression in tumor tissue; ↓, represents down-regulated gene expression in tumor tissue; (i), diagnostic; (ii), prognostic; (iii), therapeutic; (iv), metastasis monitoring. RT-qPCR, real-time quantitative PCR; WB, western blot; RT-PCR, reverse transcription PCR; ESCC, esophageal squamous cell cancer.
List of common miRNA biomarkers for esophageal cancer
| Name | Expression | Mechanism | Biomarker potency | Study setting | Detection method | Reference |
|---|---|---|---|---|---|---|
| miR-21 | ↑ ( | Target the key proteins of the PTEN/PI3K/AKT signal pathway ( | (i), (ii), (iii) ( | Serum ( | RT-qPCR ( | ( |
| miR-18a | ↑ ( | Regulate the PTEN-PI3K-AKT-mTOR signal axis, incerase the expression of cylin D1 in ESCC ( | (i), (ii) (collaborate with miR-21 will get higher sensitivity and better effect) ( | Serum ( | RT-PCR ( | ( |
| miR-17/20a | ↑ | Inhibit Tβ-β / integrin β6 subunit pathway by targeting TβR2 and Smad anchor receptor activation and degradation in ESCC | (i), (ii) | cell lines, mice (a, b) | qPCR, IHC, Tumor formation study, | ( |
| mi R-203 | ↑ ( | MiR-203 targets MAP3K1, thereby inhibiting cell proliferation and invasion ( | (ii), (iv) ( | Tumor (a) | RT-qPCR ( | ( |
| miR-1290 | ↑ ( | Target NFIX ( | (iv) ( | Serum (a) | miRNA microarray | ( |
| mi R-145 | ↓ ( | Target SMAD5, promote cell proliferation and migration/invasion ( | (ii), (iii) ( | Tumor, cell, mice (a, b) | RT-qPCR, WB, IHC, Luciferase reporter assay | ( |
| miR-143 | ↓ ( | MAPK7 pathway ( | (iii) | Tumor (a) | RT-qPCR | ( |
| miR-122 | ↓ | Target and down-regulate PKM2 to inhibit the proliferation of esophageal carcinoma cells | (iii) | Cell (a) | Bioinformatics analysis, RT-qPCR, WB | ( |
| miR-133b | ↓ ( | Down-regulate the expression of EGFR in ESCC to inhibit MAPK/ERK and PI3K/AKT pathway ( | (i), (ii) | Tumor, cell, mice (a, b) | RT-qPCR ( | ( |
↑, represents up-regulated gene expression in tumor tissue; ↓, represents down-regulated gene expression in tumor tissue; (i), diagnostic; (ii), prognostic; (iii), therapeutic; (iv), metastasis monitoring. RT-qPCR, real-time quantitative PCR; WB, western blot; RT-PCR, reverse transcription PCR; ESCC, esophageal squamous cell cancer.
List of common circRNA biomarkers for esophageal cancer
| Name | Expression | Mechanism | Biomarker potency | Study setting | Detection method | Reference |
|---|---|---|---|---|---|---|
| ciRS-7 | ↑ ( | As miR-876-5p and miR-7sponge, inhibit them to regulate antigen MAGE-A family in ESCC ( | (i), (iii) ( | Tumor (a) | RT-PCR | ( |
| CircHIPK3 | ↑ | Regulate P53-Akt-Mdm2 signal pathway in ESCC | (iii) | Tumor (a) | RT-qPCR, Bioinformatics analysis, WB | ( |
| circ-0006168 | ↑ | Target regulate miR-100/mTOR and miR-339-5p/CDC25A pathway | (i), (iii) | Tumor, cell (a) | RT-qPCR, Dual-Luciferase reporter system | ( |
| hsa_circ0004771 | ↑ | Regulate miR-339-5p/CDC25A pathway in ESCC | (i), (ii) (low invasive biomarker) | plasma (a) | RT-qPCR | ( |
| circVRK1 | ↓ | Regulate miR-624-3p/PTEN/PI3K/AKT signaling pathway | (iii) | Tumor, cell (a) | RT-qPCR | ( |
| circ-ITCH | ↓ | Make miR-7, miR-17, miR-214 molecular sponges, enhancing the expression of ITCH to ubiquitin degrade phosphorylated DVL2 and thus inhibit the development of the Wnt pathway in ESCC | (iv) | Tumor, cell, mice (a, b) | RT-qPCR, Bioinformatics analysis, WB, Tumor formation study | ( |
| circ-0043898 | ↓ | Participate in the synthesis of tumor proteoglycan and RAP1 and mTOR signaling pathways | (i), (iii) | Tumor, cell, mice (a, b) | RNA-seq, RT-PCR, GO, KEGG, Tumor formation study | ( |
↑, represents up-regulated gene expression in tumor tissue, ↓, represents down-regulated gene expression in tumor tissue, (i) diagnostic, (ii) prognostic and (iii) therapeutic (iv) metastasis monitoring, a in-vitro, b, in-vivo, c, in-situ, RT-qPCR, real-time quantitative PCR, WB, western blot, RT-PCR, reverse transcription PCR, ESCC, esophageal squamous cell cancer.