Literature DB >> 35107861

Solid-Phase Synthesis and Application of a Clickable Version of Epoxomicin for Proteasome Activity Analysis.

Andres F Salazar-Chaparro1, Saayak Halder1, Marianne E Maresh1, Darci J Trader1.   

Abstract

Degradation of proteins by the proteasome is an essential cellular process and one that many wish to study in a variety of disease types. There are commercially available probes that can monitor proteasome activity in cells, but they typically contain common fluorophores that limit their simultaneous use with other activity-based probes. In order to exchange the fluorophore or incorporate an enrichment tag, the proteasome probe likely has to be synthesized which can be cumbersome. Here, we describe a simple synthetic procedure that only requires one purification step to generate epoxomicin, a selective proteasome inhibitor, with a terminal alkyne. Through a copper-catalyzed cycloaddition, any moiety containing an azide can be incorporated into the probe. Many fluorophores are commercially available that contain an azide that can be "clicked", allowing this proteasome activity probe to be included into already established assays to monitor both proteasome activity and other cellular activities of interest.
© 2022 The Authors. ChemBioChem published by Wiley-VCH GmbH.

Entities:  

Keywords:  epoxomicin; fluorescent probes; inhibitors; linkers; proteasome

Mesh:

Substances:

Year:  2022        PMID: 35107861      PMCID: PMC9122039          DOI: 10.1002/cbic.202100710

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.461


  30 in total

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Authors:  A F Kisselev; A L Goldberg
Journal:  Chem Biol       Date:  2001-08

2.  Synthesis of pH-activatable red fluorescent BODIPY dyes with distinct functionalities.

Authors:  Sascha Hoogendoorn; Annet E M Blom; Lianne I Willems; Gijsbert A van der Marel; Herman S Overkleeft
Journal:  Org Lett       Date:  2011-09-26       Impact factor: 6.005

3.  Profiling proteasome activity in tissue with fluorescent probes.

Authors:  Celia R Berkers; Fijs W B van Leeuwen; Tom A Groothuis; Victor Peperzak; Erica W van Tilburg; Jannie Borst; Jacques J Neefjes; Huib Ovaa
Journal:  Mol Pharm       Date:  2007-08-21       Impact factor: 4.939

4.  An atomic structure of the human 26S proteasome.

Authors:  Xiuliang Huang; Bai Luan; Jianping Wu; Yigong Shi
Journal:  Nat Struct Mol Biol       Date:  2016-07-18       Impact factor: 15.369

5.  Fluorescence-based proteasome activity profiling.

Authors:  Annemieke de Jong; Karianne G Schuurman; Boris Rodenko; Huib Ovaa; Celia R Berkers
Journal:  Methods Mol Biol       Date:  2012

Review 6.  The role of ubiquitin-proteasome system in ageing.

Authors:  Peter Löw
Journal:  Gen Comp Endocrinol       Date:  2011-02-13       Impact factor: 2.822

7.  Structural insights into proteasome activation by the 19S regulatory particle.

Authors:  Aaron Ehlinger; Kylie J Walters
Journal:  Biochemistry       Date:  2013-05-14       Impact factor: 3.162

Review 8.  The proteostasis network and its decline in ageing.

Authors:  Mark S Hipp; Prasad Kasturi; F Ulrich Hartl
Journal:  Nat Rev Mol Cell Biol       Date:  2019-07       Impact factor: 94.444

Review 9.  Highlighting the Proteasome: Using Fluorescence to Visualize Proteasome Activity and Distribution.

Authors:  Jin Gan; Yves Leestemaker; Aysegul Sapmaz; Huib Ovaa
Journal:  Front Mol Biosci       Date:  2019-03-22
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