| Literature DB >> 35096890 |
Na Wang1, Shuai Yuan1, Cheng Fang1, Xiao Hu1,2, Yu-Sen Zhang1,2, Ling-Ling Zhang1, Xian-Tao Zeng1,2.
Abstract
Extracellular vesicles (EVs) are natural nanoparticles secreted by cells in the body and released into the extracellular environment. They are associated with various physiological or pathological processes, and considered as carriers in intercellular information transmission, so that EVs can be used as an important marker of liquid biopsy for disease diagnosis and prognosis. EVs are widely present in various body fluids, among which, urine is easy to obtain in large amount through non-invasive methods and has a small dynamic range of proteins, so it is a good object for studying EVs. However, most of the current isolation and detection of EVs still use traditional methods, which are of low purity, time consuming, and poor efficiency; therefore, more efficient and highly selective techniques are urgently needed. Recently, inspired by the nanoscale of EVs, platforms based on nanomaterials have been innovatively explored for isolation and detection of EVs from body fluids. These newly developed nanotechnologies, with higher selectivity and sensitivity, greatly improve the precision of isolation target EVs from urine. This review focuses on the nanomaterials used in isolation and detection of urinary EVs, discusses the advantages and disadvantages between traditional methods and nanomaterials-based platforms, and presents urinary EV-derived biomarkers for prostate cancer (PCa) diagnosis. We aim to provide a reference for researchers who want to carry out studies about nanomaterial-based platforms to identify urinary EVs, and we hope to summarize the biomarkers in downstream analysis of urinary EVs for auxiliary diagnosis of PCa disease in detail.Entities:
Keywords: biomarkers; detection; isolation; nanomaterials; prostate cancer; urinary extracellular vesicles
Year: 2022 PMID: 35096890 PMCID: PMC8795515 DOI: 10.3389/fmed.2021.800889
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Advantages and disadvantages of traditional techniques for EVs isolation.
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| UC ( | Based on size, density and mass | Simple operation; | Time-consuming; low throughput; large sample volume required; dependent on expensive equipment; purity and recovery rate are easily affected by cell debris and non-EV-related proteins; the structure of EVs may be destroyed by excessive gravity |
| DG ( | Based on the different flotation densities | High recovery; | Time-consuming; complicated steps; separated EVs may be contaminated by pollutants with the same density as EVs |
| UF ( | Based on size | simple and fast operation; low-cost; | Non-specific binding of EVs to filter membrane will reduce yield |
| SEC ( | Based on size | High recovery rate; | Dilution of EVs sample; lack specificity; low throughput; purity is easily affected by particles of similar EVs size |
| IAF ( | Based on the highly specific binding of antibodies to specific antigen epitopes on EVs surfaces | Strong specificity; | High reagent cost; limited to EVs with known antigens; low recovery rate; difficult to separate the extracted EV from the reacted antibody |
| Precipitation ( | Based on the salts or organic solvents destroyed the hydration layer on the surface of protein molecules | Simple operation; | Lack specificity; purity is easily affected by heterogeneous polymeric particles |
EVs, extracellular vesicles; UC, ultracentrifugation; DG, density gradient centrifugation; UF, ultrafiltration; SEC, size-exclusion chromatography; IAF, immunoaffinity.
Advantages and disadvantages of traditional techniques to detect EVs.
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| TEM ( | Scattered electron beam | High resolution; | Lengthy sample preparation and prone to affect the morphology and the size distribution of EVs; lack of multi-parametric phenotyping; low throughput |
| DLS ( | The intensity of the scattered light caused by the Brownian motion of the particles | High sensitivity; | The accuracy of detection signal is easily affected by the interference of contaminants; lack specificity |
| FCM ( | Fluorescent signal and scattered light signal | High throughput; | Poor reproducibility; particles <100 nm could not be detected; scatter resolution; |
| NTA ( | Laser light scattering and the Brownian motion of particles | Relatively high throughput; | Time-consuming; lack of essential standardization; manual operation leads to human error; poor reproducibility |
| RPS ( | Resistance pulses caused by particles passing through the pore | High accuracy; | Relatively low stability and sensitivity due to the blockage of pores; multiple pore sizes are required; lack of multi-parametric phenotyping |
| WB ( | Specific EVs marker proteins | High sensitivity and specificity; | Time-consuming; semi-quantitative; cannot provide information on individual EV; cannot distinguish different EVs subtypes |
| ELISA ( | Binding of antibodies | Simple operation; | Cannot obtain information on the size distribution of EVs; poor reproducibility; high background signal; the result is susceptible to temperature and time |
EVs, extracellular vesicles; TEM, transmission electron microscopy; DLS, dynamic light scattering; FCM, flow cytometry; NTA, nanoparticle tracking analysis; RPS, resistive pulse sensing; WB, western blotting; ELISA, enzyme linked immunosorbent assay.
Figure 1Platforms based on nanomaterials for physical isolation of extracellular vesicles (EVs) from urine. (A) Mechanism of an integrated device (Exodisc) for isolating urinary EVs through two nanofilters with different pore diameters (600:20 nm). Reprinted with permission from Woo et al. (65). (B) Mechanism of urinary exosomes isolation using nanomaterials device combined with double-filtration (200:30 nm). Reprinted with permission from Liang et al. (71). (C) Mechanism of nanomembrane-based modular platform (ExoTIC) for isolating urinary EVs. Reprinted with permission from Liu et al. (66). (D) Mechanism of a nanomaterials device (Exo-POS) combined with a vacuum syringe and nanomembrane for isolating urinary EVs. Reprinted with permission from Deng et al. (67). (E) Mechanism of a nanomaterials device (EXODUC) combined with nanoporous membrane and oscillators for isolating urinary EVs. Reprinted with permission from Chen et al. (68).
Figure 2Microfluidic chips based on nanomaterials for isolation of EVs from urine. (A) Mechanism of a microfluidic chip for isolating urinary EVs using electrostatic interactions between the anchored ZnO/Al2O3 core-shell nanowires and EVs. Reprinted with permission from Yasui et al. (70). (B) Mechanism of a microfluidic chip composed of arrays of the deterministic lateral displacement (DLD) pillars for urinary exosomes isolation. Reprinted with permission from Wunsch et al. (72).
Figure 3Platforms based on immunoaffinity (IAF) magnetic nanobeads for isolation of urinary EVs. (A) Mechanism of urinary EVs isolation using nanomaterials complexes (superparamagnetic conjunction-molecular beacon [SMC-MB]) combined with prostate-specific membrane antigen (PSMA) aptamers, superparamagnetic Fe3O4 nanoparticles, and single-stranded DNAs. Reprinted with permission from Li et al. (76). (B) Mechanism of urinary EVs isolation using nanomaterials complexes (Fe3O4@TiO2-CD63 aptamer) composed of CD63 aptamer and TiO2 coated on Fe3O4 nanoparticles. Reprinted with permission from Zhang et al. (77). (C) Mechanism of urinary EVs isolation using a dual-function nanomagnetic beads designed with Ti (IV) and 1,2distearoyl-sn-glycero-3-phosphorylethanolamine (DSPE). Reprinted with permission from Sun et al. (78).
Comparison of platforms based on different nanomaterials for detection of urinary EVs.
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| Urine | Nanofilters (600: 20 nm) | On-disc ELISA | 1,000 | CD81/CD9 | <30 min | N/A | Elution | ( |
| Urine | IAF capture | Immunofluorescence | 1,000 | CD81/CD63/CD9 | 87 min (isolation + detection) | N/A | Magnet release | ( |
| Urine | IAF capture | Molecular beacon | 10,000 | PSMA | 2 h (isolation + detection) | 100 particles/μL | Magnet release and restriction enzyme | ( |
| Urine | IAF capture | Immunofluorescence | 500 | CD81/CD63/CD9 | N/A | N/A | Magnet release | ( |
| Urine | IAF capture | NP-TRFIA | 200 | Tetraspanin | N/A | 0.03–0.06 ng/mL | Magnet release | ( |
| Urine | IAF capture | On-chip ELISA | 8,000 | CD63 | 200 min (isolation + detection) | 35.0 arbitrary unit/mL | N/A | ( |
| Urine | Electrostatic effect produced by nanowires | 1,000 | miRNAs | N/A | N/A | ( | ||
| Urine | Hydrophilic enrichment | Mass spectrometry (MS) | 200 | N-glycopeptides | 1 h | N/A | Elution | ( |
EVs, extracellular vesicles; Ref, reference; ELISA, enzyme linked immunosorbent assay; N/A, not available; IAF, immunoaffinity; PSMA, prostate-specific membrane antigen; NP-TRFIA, Eu3+-doped nanoparticles with time-resolved fluorescence immunoassay; MS, mass spectrometry.
Figure 4Platforms based on nanomaterials for urinary EVs direct detection. (A) Schematic representation of urinary exosomes detection using on-chip ELISA with biotinylated anti-CD63 and streptavidin-HRP. Reprinted with permission from Liang et al. (71). (B) Schematic of a dual-function nanomaterials device (Exodisc) to detect urinary EVs through on-chip ELISA with biotinylated anti-CD9 and streptavidin-HRP. Reprinted with permission from Woo et al. (65). (C) Schematic of nanoparticles-based device combined Eu3+-doped nanoparticles with time-resolved fluorescence immunoassay (TRFIA) for detecting urinary EVs. Reprinted with permission from Islam et al. (83). (D) Schematic representation of nanoparticles complexes combined nanomagnetic beads, three specific antibodies of rabbit-anti CD9, mouse-anti CD63, and goat-anti CD81, and the corresponding secondary antibodies for detecting urinary EVs. Reprinted with permission from Hildonen et al. (75).
Figure 5Platforms based on nanomaterials for urinary EVs indirect detection. (A) Schematic representation of urinary EVs indirect detection using nano-complexes (SMC-MB) with molecular beacon. Reprinted with permission from Li et al. (76). (B) Schematic of a microfluidic device integrated with nanowires in the microchannels performed in situ miRNA extraction. Reprinted with permission from Yasui et al. (70). (C) Schematic representation of composite material combined MoS2, superparamagnetic Fe3O4 nanoparticles, ultra-thin Au nanowires, and glutathione for enriching and detecting N-glycopeptides of urinary exosomes. Reprinted with permission from Zhang et al. (81).
Protein, miRNA, and mRNA biomarkers of urinary EVs for PCa.
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| TM256 | Liquid chromatography-mass spectrometer/mass spectrometer (LC-MS/MS) | 0.87 | Diagnosis | ( | |
| Afamin, cardiotrophin-1, | SOMAscan® | - | Prognosis | ( | |
| FABP5 | iTRAQ-Labeling | Gleason scores | Diagnosis | ( | |
| ADSV+TGM4 | SRM | 0.65 | Diagnosis and prognosis | ( | |
| Flotillin 2 | WB | 0.914 | Diagnosis | ( | |
| FKBP5, FAM129A, RAB27A, | LC-MS/MS | - | Diagnosis | ( | |
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| miR-19b | RT-qPCR | - | Diagnosis | ( | |
| miR-204+miR-21+miR-375 | Stemloop | 0.821 | Diagnosis | ( | |
| miR-574-3p | RT-qPCR | 0.85 | Diagnosis | ( | |
| miR-21+miR-375 | RT-qPCR | 0.872 | Diagnosis and prognosis | ( | |
| miR-196a-5p | RT-qPCR | 0.73 | Diagnosis | ( | |
| miR-2909 | RT-qPCR | - | Diagnosis and prognosis | ( | |
| miR-145 | RT-qPCR | 0.623 | Diagnosis and prognosis | ( | |
| 5 miRNA pairs (miR-30a: | miRCURY LNA miRNA qPCR Panels# | - | Diagnosis | ( | |
| miR-375-3p+miR-574-3p | RT-qPCR | 0.744 | Diagnosis | ( | |
| miR-6090/miR-3665 | Hydrogel-based hybridization chain reaction (HCR) | 0.88 | Diagnosis | ( | |
| miR-30b-3p | Microarray analysis; RT-qPCR | 0.663 | Diagnosis | ( | |
| miR-636+miR-21+miR-451+PSA | RT-qPCR | 0.925 | Prognosis | ( | |
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| TMPRSS2: ERG | RT-qPCR | 0.744 | Diagnosis | ( | |
| ERG+PCA3+SPDEF+Standard of Care (SOC) | RT-qPCR | 0.77 | Diagnosis | ( | |
| ERG+PCA3+SOC | RT-qPCR | 0.803 | Diagnosis | ( | |
| CDH3 | RT-qPCR | - | Diagnosis | ( | |
| GATA2 | RT-qPCR | 0.78(training) | Diagnosis | ( | |
| PCA3+PCGEM1 | ddPCR | 0.88 | Diagnosis | ( | |
A multiplex assay method consists of 1,129 individual affinity molecules called SOMAmer® reagents.
EVs, extracellular vesicles; AUC, area under curve; Ref, reference; ITRAQ, isobaric tags for relative and absolute quantitation; LC-MS/MS, liquid chromatograph-mass spectrometer/mass spectrometer; GS, Gleason scores; SRM, selected reaction monitoring; WB, western blotting; ELISA, enzyme-linked immunosorbent assay; RT-qPCR, reverse-transcription quantitative real-time PCR; PSA, prostate-specific antigen; HCR, hybridization chain reaction; SOC, standard of care; ddPCR, droplet digital PCR.