| Literature DB >> 35092189 |
Vincent Cicculli1,2, Nazli Ayhan2, Léa Luciani2, Laura Pezzi2, Apolline Maitre1, Dorine Decarreaux1, Xavier de Lamballerie2, Jean-Christophe Paoli3, Laurence Vial4, Remi Charrel2, Alessandra Falchi1.
Abstract
BACKGROUND: Several viruses belonging to the family Poxviridae can cause infections in humans and animals. In Corsica, livestock farming (sheep, goats, pigs, and cattle) is mainly mixed, leading to important interactions between livestock, wildlife, and human populations. This could facilitate the circulation of zoonotic diseases, and makes Corsica a good example for studies of tick-borne diseases.Entities:
Keywords: cattle; epidemiology; ticks; zoonoses
Mesh:
Year: 2022 PMID: 35092189 PMCID: PMC8959304 DOI: 10.1002/vms3.700
Source DB: PubMed Journal: Vet Med Sci ISSN: 2053-1095
FIGURE 1(a) Map of Corsica, France, indicating the tick collection sites and the animal species and farm and (b) tick species and positive pools of ticks collected from cattle in the study area, Corsica. R. sanguineus (n = 6) and H. punctata (n = 4) were not included
Distribution of tick species by host and pools positive for parapoxvirus DNA 2018/2019
| Number of pools with | Number of positive pools detected by real‐time Pan‐Parapoxvirus PCR | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cattle 2019 ( | ||||||||||||||
| Number of individual ticks or ticks per pool ( |
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| Total | Pool |
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| Total |
| 1 | 60 | 55 | 30 | 4 | 3 | 12 | 6 | 0 | 170 | 1 | 1 | 2 | 2 | 5 |
| 2 | 25 | 25 | 6 | 0 | 0 | 2 | 5 | 0 | 63 | 2 | 1 | 3 | 1 | 5 |
| 3 | 14 | 13 | 6 | 0 | 1 | 4 | 3 | 0 | 41 | 3 | 2 | 1 | 0 | 3 |
| 4 | 17 | 10 | 4 | 0 | 0 | 0 | 1 | 0 | 32 | 4 | 2 | 1 | 0 | 3 |
| 5 | 12 | 5 | 2 | 0 | 0 | 4 | 0 | 0 | 23 | 5 | 0 | 0 | 0 | 0 |
| 6 | 30 | 16 | 11 | 0 | 0 | 5 | 5 | 0 | 67 | 6 | 4 | 2 | 2 | 8 |
| Total | 158 | 124 | 59 | 4 | 4 | 27 | 20 | 0 | 396 | Total | 10 | 9 | 5 | 24 |
| Number of ticks | 460 | 305 | 152 | 4 | 6 | 78 | 59 | 0 | 1064 | MLE (95% CI) | 2.25 (1.13–3.92) | 3.04 (1.47–5.42) | 3.42 (1.24–7.21) | 2.32 (1.52–3.36) |
| Cattle 2018 ( | ||||||||||||||
| 1 | 12 | 25 | 0 | 0 | 0 | 0 | 1 | 0 | 38 | 1 | 0 | 2 | 0 | 2 |
| 2 | 7 | 9 | 0 | 0 | 0 | 0 | 1 | 0 | 17 | 2 | 2 | 1 | 0 | 3 |
| 3 | 8 | 14 | 0 | 0 | 0 | 0 | 1 | 0 | 23 | 3 | 2 | 3 | 0 | 5 |
| 4 | 15 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 20 | 4 | 0 | 0 | 0 | 0 |
| 5 | 14 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 19 | 5 | 0 | 0 | 0 | 0 |
| 6 | 30 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 31 | 6 | 2 | 0 | 0 | 2 |
| Total | 86 | 59 | 0 | 0 | 0 | 0 | 3 | 0 | 148 | Total | 6 | 6 | 0 | 12 |
| Number of ticks | 360 | 136 | 0 | 0 | 0 | 0 | 6 | 0 | 502 | MLE (95% CI) | 1.71 (0.68–3.43) | 4.53 (1.83–8.97) | / | 2.45 (1.32–4.07) |
| Cattle 2018/2019 ( | ||||||||||||||
| 1 | 72 | 80 | 30 | 4 | 3 | 12 | 7 | 0 | 208 | 1 | 1 | 4 | 2 | 7 |
| 2 | 32 | 34 | 6 | 0 | 0 | 2 | 6 | 0 | 80 | 2 | 3 | 4 | 1 | 8 |
| 3 | 22 | 27 | 6 | 0 | 1 | 4 | 4 | 0 | 64 | 3 | 4 | 4 | 0 | 8 |
| 4 | 32 | 15 | 4 | 0 | 0 | 0 | 1 | 0 | 52 | 4 | 2 | 1 | 0 | 3 |
| 5 | 26 | 10 | 2 | 0 | 0 | 4 | 0 | 0 | 42 | 5 | 0 | 0 | 0 | 0 |
| 6 | 60 | 17 | 11 | 0 | 0 | 5 | 5 | 0 | 98 | 6 | 6 | 2 | 2 | 10 |
| Total | 244 | 183 | 59 | 4 | 4 | 27 | 23 | 0 | 544 | Total | 16 | 15 | 5 | 36 |
| Number of ticks | 820 | 441 | 152 | 4 | 6 | 78 | 65 | 0 | 1566 | MLE (95% CI) | 2.01 (1.18–3.14) | 3.5 (2.03–5.53) | 3.42 (1.24–7.21) | 2.36 (1.68–3.21) |
| Horses 2019 ( | ||||||||||||||
| 1 | 15 | 29 | 0 | 0 | 0 | 0 | 0 | 0 | 44 | 1 | 0 | 0 | 0 | 0 |
| 2 | 10 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 22 | 2 | 0 | 0 | 0 | 0 |
| 3 | 9 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 3 | 0 | 0 | 0 | 0 |
| 4 | 9 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 23 | 4 | 0 | 0 | 0 | 0 |
| 5 | 4 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 5 | 0 | 0 | 0 | 0 |
| 6 | 5 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 6 | 0 | 0 | 0 | 0 |
| 7 | 5 | 11 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 7 | 0 | 0 | 0 | 0 |
| 8 | 6 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 8 | 0 | 0 | 0 | 0 |
| 9 | 3 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 9 | 0 | 0 | 0 | 0 |
| 10 | 32 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | 49 | 10 | 0 | 0 | 0 | 0 |
| Total | 98 | 142 | 0 | 0 | 0 | 0 | 0 | 0 | 240 | Total | 0 | 0 | 0 | 0 |
| Number of ticks | 578 | 707 | 0 | 0 | 0 | 0 | 0 | 0 | 1285 | |||||
| Wild boars 2018/2019 ( | ||||||||||||||
| 1 | 4 | 1 | 0 | 0 | 0 | 0 | 1 | 33 | 39 | 1 | 0 | 0 | 0 | 0 |
| 2 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 25 | 28 | 2 | 0 | 0 | 0 | 0 |
| 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 22 | 23 | 3 | 0 | 0 | 0 | 0 |
| 4 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 25 | 27 | 4 | 0 | 0 | 0 | 0 |
| 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 19 | 19 | 5 | 0 | 0 | 0 | 0 |
| 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 53 | 53 | 6 | 0 | 0 | 0 | 0 |
| Total | 6 | 1 | 0 | 0 | 0 | 0 | 5 | 177 | 189 | Total | 0 | 0 | 0 | 0 |
| Number of ticks | 9 | 1 | 0 | 0 | 0 | 0 | 13 | 662 | 685 | |||||
| Sheep 2019 ( | ||||||||||||||
| 1 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 30 | 1 | 0 | 0 | 0 | 0 |
| Total | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 30 | Total | 0 | 0 | 0 | 0 |
| Number of ticks | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 30 | |||||
Abbreviation: MLE, maximum likelihood estimation.
Primers and probes used for the detection and amplification of parapoxvirus and orthopoxvirus
| Genus or species | Primer and probe | 5′ → 3′ Sequence | Gene | Reference |
|---|---|---|---|---|
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| Forward | TCGATGCGGTGCAGCAC | B2L | (Nitsche et al., |
| Reverse | GCGGCGTATTCTTCTCGGAC | |||
| Probe | TGCGGTAGAAGCC | |||
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| Forward | GAA CAT TTT TGG CAG AGA GAG CC | HA (J7R) | (Kulesh et al., |
| Reverse | CAA CTC TTA GCC GAA GCG TAT GAG | |||
| Probe | CAG GCT ACC AGT TCA A | |||
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| Forward | GTG CGC GAA GGT GTC Kuleshov CA | ORF 011 (B2L) | (Friederichs et al., |
| Reverse | ATGTGGCCGTTCTCCTCCATC | |||
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| Forward | CGAGCTTTAAATAGTGGAAACACAGC | ORF 032 | (Friederichs et al., |
| Reverse | GCACCATCATCCTGTACTTCCTC |
Tick species pools positive for parapoxvirus DNA
| Pools ID | Tick species | Farms | Cattle ID | Number of pools per cattle | Number of cattle per Farm | Province | Sample | B2L accession number | ORF 032 accession number |
|---|---|---|---|---|---|---|---|---|---|
| 2019 75 |
| CAL1 | 8520 | 5 | 1 | Calcatoghju | / | / | / |
| 2019 78 |
| ||||||||
| 2019 79 |
| ||||||||
| 2019 91 |
| LAV1 | 7093 | 7 | 1 | Lavatoghju | PCPVCorsica2019I | MW911454 | MW911458 |
| 2019 265 |
| OLM1 | 2923 | 4 | 1 | Olmi‐Cappella | / | / | / |
| 2019 268 |
| OLM2 | 1273 | 1 | 1 | ||||
| 2019 259 |
| OLM3 | 8821 | 3 | 1 | Olmu | |||
| 2019 74 |
| NA1 | NA4 | 4 | / | Unknown | |||
| 2019 96 |
| NA5 | 7 | ||||||
| 2019 26 |
| CAS1 | 3186 | 6 | 1 | Casanova | |||
| 2019 27 |
| ||||||||
| 2019 25 |
| MOL1 | 4135 | 1 | 1 | Moltifau | |||
| 2019 24 |
| POP1 | 3256 | 2 | 1 | Pulasca | |||
| 2019 22 |
| VAL1 | 4607 | 2 | 1 | Valle di Rustinu | |||
| 2019 306 |
| LAV2 | 309 | 4 | 2 | Lavatoghju | |||
| 2019 307 |
| ||||||||
| 2019 308 |
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| 2019 309 |
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| 2019 310 |
| 310 | 2 | ||||||
| 2019 311 |
| ||||||||
| 2019 215 |
| NA2 | NA9 | 4 | Unknown | ||||
| 2019 217 |
| ||||||||
| 2019 218 |
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| 2019 272 |
| FAR1 | 2018 | 1 | 3 | Faringule | PCPVCorsica2019II | MW911455 | MW911459 |
| 2018 2 |
| FIL1 | 50 | 2 | 1 | Filicetu | PCPVCorsica2018III | / | MW911462 |
| 2018 3 |
| 50 | PCPVCorsica2018I | MW911453 |
| ||||
| 2018 9 |
| POR1 | 5 | 1 | Portivechju | PCPVCorsica2018IV | / | MW911456 | |
| 2018 10 |
| SAN1 | 6825 | 5 | 1 | San Martinu di Lotta | / | / | |
| 2018 12 |
| 6825 | PCPVCorsica2018V | MW911457 | |||||
| 2018 13 |
| 6825 | PCPVCorsica2018II | MW911462 | |||||
| 2018 14 |
| 6825 | / | / | |||||
| 2018 15 |
| MON1 | 5687 | 1 | 1 | Monticellu | |||
| 2018 101 |
| ZIL1 | 6924 | 1 | 1 | Zilia | |||
| 2018 102 |
| LENT1 | 8523 | 1 | 1 | Lentu | |||
| 2018 103 |
| PIE1 | 621 | 1 | 1 | Pietralba | |||
| 2018 105 |
| PIE2 | 1823 | 1 | 2 | Nessa |
FIGURE 2Phylogenic radiation tree of parapoxvirus‐group based deduced of 292 amino acid sequences of ORF 032 gene of parapoxvirus. The analysis was performed using a maximum‐likelihood method with JTT matrix‐based model with 1000 replicates (only values higher than 70% are shown). This analysis involved 24 amino acid sequences
FIGURE 3Phylogenic radiation tree of parapoxvirus‐group based deduced of 297 amino acid sequences of B2L gene of parapoxvirus. The analysis was performed using a maximum‐likelihood method with JTT matrix‐based model with 1000 replicates (only values higher than 70% are shown). This analysis involved 15 amino acid sequences