Literature DB >> 35086739

The era of reference genomes in conservation genomics.

Giulio Formenti1, Kathrin Theissinger2, Carlos Fernandes3, Iliana Bista4, Aureliano Bombarely5, Christoph Bleidorn6, Claudio Ciofi7, Angelica Crottini8, José A Godoy9, Jacob Höglund10, Joanna Malukiewicz11, Alice Mouton12, Rebekah A Oomen13, Sadye Paez1, Per J Palsbøll14, Christophe Pampoulie15, María J Ruiz-López9, Hannes Svardal16, Constantina Theofanopoulou1, Jan de Vries17, Ann-Marie Waldvogel18, Guojie Zhang19, Camila J Mazzoni20, Erich D Jarvis1, Miklós Bálint21.   

Abstract

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.
Copyright © 2021. Published by Elsevier Ltd.

Entities:  

Keywords:  ERGA; European Reference Genome Atlas; biodiversity conservation; conservation genetics

Mesh:

Year:  2022        PMID: 35086739     DOI: 10.1016/j.tree.2021.11.008

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  7 in total

1.  A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics.

Authors:  Yafei Mao; Guojie Zhang
Journal:  Nat Methods       Date:  2022-06       Impact factor: 28.547

2.  Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.

Authors:  Robert M Waterhouse; Anne-Françoise Adam-Blondon; Donat Agosti; Petr Baldrian; Bachir Balech; Erwan Corre; Robert P Davey; Henrik Lantz; Graziano Pesole; Christian Quast; Frank Oliver Glöckner; Niels Raes; Anna Sandionigi; Monica Santamaria; Wouter Addink; Jiri Vohradsky; Amandine Nunes-Jorge; Nils Peder Willassen; Jerry Lanfear
Journal:  F1000Res       Date:  2021-12-03

3.  Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass, and reference genome properties.

Authors:  Alexandra Schmidt; Clément Schneider; Peter Decker; Karin Hohberg; Jörg Römbke; Ricarda Lehmitz; Miklós Bálint
Journal:  Ecol Evol       Date:  2022-06-06       Impact factor: 3.167

4.  Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families.

Authors:  Alessia Russo; Baptiste Mayjonade; Daniel Frei; Giacomo Potente; Roman T Kellenberger; Léa Frachon; Dario Copetti; Bruno Studer; Jürg E Frey; Ueli Grossniklaus; Philipp M Schlüter
Journal:  Front Plant Sci       Date:  2022-05-19       Impact factor: 6.627

5.  The gill transcriptome of threatened European freshwater mussels.

Authors:  André Gomes-Dos-Santos; André M Machado; L Filipe C Castro; Vincent Prié; Amílcar Teixeira; Manuel Lopes-Lima; Elsa Froufe
Journal:  Sci Data       Date:  2022-08-13       Impact factor: 8.501

6.  Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population.

Authors:  F Gözde Çilingir; Luke A'Bear; Dennis Hansen; Leyla R Davis; Nancy Bunbury; Arpat Ozgul; Daniel Croll; Christine Grossen
Journal:  Gigascience       Date:  2022-10-12       Impact factor: 7.658

7.  Squalomix: shark and ray genome analysis consortium and its data sharing platform.

Authors:  Osamu Nishimura; John Rozewicki; Kazuaki Yamaguchi; Kaori Tatsumi; Yuta Ohishi; Tazro Ohta; Masaru Yagura; Taiki Niwa; Chiharu Tanegashima; Akinori Teramura; Shotaro Hirase; Akane Kawaguchi; Milton Tan; Salvatore D'Aniello; Filipe Castro; André Machado; Mitsumasa Koyanagi; Akihisa Terakita; Ryo Misawa; Masayuki Horie; Junna Kawasaki; Takashi Asahida; Atsuko Yamaguchi; Kiyomi Murakumo; Rui Matsumoto; Iker Irisarri; Norio Miyamoto; Atsushi Toyoda; Sho Tanaka; Tatsuya Sakamoto; Yasuko Semba; Shinya Yamauchi; Kazuyuki Yamada; Kiyonori Nishida; Itsuki Kiyatake; Keiichi Sato; Susumu Hyodo; Mitsutaka Kadota; Yoshinobu Uno; Shigehiro Kuraku
Journal:  F1000Res       Date:  2022-09-21
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.