Literature DB >> 35085899

Dynamic nuclear polarization-enhanced, double-quantum filtered 13C-13C dipolar correlation spectroscopy of natural 13C abundant bone-tissue biomaterial.

Sungsool Wi1, Navneet Dwivedi2, Richa Dubey3, Frederic Mentink-Vigier4, Neeraj Sinha3.   

Abstract

Here, we describe a method for obtaining a dynamic nuclear polarization (DNP)-enhanced double-quantum filtered (DQF) two-dimensional (2D) dipolar 13C-13C correlation spectra of bone-tissue material at natural 13C abundance. DNP-enhanced DQF 2D dipolar 13C-13C spectra were obtained using a few different mixing times of the dipolar-assisted rotational resonance (DARR) scheme and these spectra were compared to a conventional 2D through-space double-quantum (DQ)-single-quantum (SQ) correlation spectrum. While this scheme can only be used for an assignment purpose to reveal the carbon-carbon connectivity within a residue, the DQF 13C-13C dipolar correlation scheme introduced here can be used to obtain longer distance carbon-carbon constraints. A DQF pulse block is placed before the DARR mixing scheme for removing dominant 13C single-quantum (SQ) signals because these SQ 13C signals are overwhelmingly large compared to those 13C-13C dipolar cross-peaks generated and therefore saturate the dynamic range of the NMR detection. This approach exhibits strong enough 2D cross-peaks in a dipolar 13C-13C correlation spectrum and potentially provides pairwise 13C-13C dipolar constraints because the dipolar truncation effect as well as multi-step signal propagations involving a spin cluster that contains more than two spins can be ignored probabilistically. To obtain fast signal averaging, AsymPolPOK was used to provide a short 1H DNP signal build-up time (1.3 s) and to expedite our MAS DNP NMR acquisitions while still maintaining a satisfactory DNP enhancement factor (ε = 50). Under long DARR mixing, a t1-noise-like artifact was observed at a site that possesses a large chemical shift anisotropy (CSA) and a few different strategies to address this problem were discussed.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  AsymPolPOK; DARR; Double-quantum Filter (DQF); MAS DNP NMR; Natural 13C abundance protein; PDSD; SPC-5; Solid-state NMR

Mesh:

Substances:

Year:  2022        PMID: 35085899      PMCID: PMC8823282          DOI: 10.1016/j.jmr.2022.107144

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  54 in total

1.  Very-long-distance correlations in proteins revealed by solid-state NMR spectroscopy.

Authors:  Bingwen Hu; Julien Trébosc; Oliver Lafon; Qun Chen; Yuichi Masuda; K Takegoshi; Jean-Paul Amoureux
Journal:  Chemphyschem       Date:  2012-08-13       Impact factor: 3.102

2.  Solid-state dipolar INADEQUATE NMR spectroscopy with a large double-quantum spectral width.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

3.  Fast and accurate MAS-DNP simulations of large spin ensembles.

Authors:  Frédéric Mentink-Vigier; Shimon Vega; Gaël De Paëpe
Journal:  Phys Chem Chem Phys       Date:  2017-02-01       Impact factor: 3.676

4.  Solid-state dynamic nuclear polarization at 263 GHz: spectrometer design and experimental results.

Authors:  Melanie Rosay; Leo Tometich; Shane Pawsey; Reto Bader; Robert Schauwecker; Monica Blank; Philipp M Borchard; Stephen R Cauffman; Kevin L Felch; Ralph T Weber; Richard J Temkin; Robert G Griffin; Werner E Maas
Journal:  Phys Chem Chem Phys       Date:  2010-05-07       Impact factor: 3.676

5.  Theoretical aspects of Magic Angle Spinning - Dynamic Nuclear Polarization.

Authors:  Frederic Mentink-Vigier; Ümit Akbey; Hartmut Oschkinat; Shimon Vega; Akiva Feintuch
Journal:  J Magn Reson       Date:  2015-07-13       Impact factor: 2.229

Review 6.  Collagen Structure-Function Relationships from Solid-State NMR Spectroscopy.

Authors:  Ieva Goldberga; Rui Li; Melinda J Duer
Journal:  Acc Chem Res       Date:  2018-06-22       Impact factor: 22.384

7.  Efficient dipolar double quantum filtering under magic angle spinning without a (1)H decoupling field.

Authors:  Joseph M Courtney; Chad M Rienstra
Journal:  J Magn Reson       Date:  2016-06-02       Impact factor: 2.229

8.  Efficiency of Water-Soluble Nitroxide Biradicals for Dynamic Nuclear Polarization in Rotating Solids at 9.4 T: bcTol-M and cyolyl-TOTAPOL as New Polarizing Agents.

Authors:  Michel-Andreas Geiger; Anil P Jagtap; Monu Kaushik; Han Sun; Daniel Stöppler; Snorri T Sigurdsson; Björn Corzilius; Hartmut Oschkinat
Journal:  Chemistry       Date:  2018-08-13       Impact factor: 5.236

9.  Mechanistic Insights into the Structural Stability of Collagen-Containing Biomaterials Such as Bones and Cartilage.

Authors:  Nidhi Tiwari; Sungsool Wi; Frederic Mentink-Vigier; Neeraj Sinha
Journal:  J Phys Chem B       Date:  2021-04-30       Impact factor: 2.991

10.  Computationally Assisted Design of Polarizing Agents for Dynamic Nuclear Polarization Enhanced NMR: The AsymPol Family.

Authors:  Frédéric Mentink-Vigier; Ildefonso Marin-Montesinos; Anil P Jagtap; Thomas Halbritter; Johan van Tol; Sabine Hediger; Daniel Lee; Snorri Th Sigurdsson; Gaël De Paëpe
Journal:  J Am Chem Soc       Date:  2018-08-24       Impact factor: 15.419

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  2 in total

1.  Unraveling Water-Mediated 31P Relaxation in Bone Mineral.

Authors:  Navneet Dwivedi; Richa Dubey; Seema Srivastava; Neeraj Sinha
Journal:  ACS Omega       Date:  2022-05-02

2.  Solid-state NMR analysis of unlabeled fungal cell walls from Aspergillus and Candida species.

Authors:  Liyanage D Fernando; Malitha C Dickwella Widanage; S Chandra Shekar; Frederic Mentink-Vigier; Ping Wang; Sungsool Wi; Tuo Wang
Journal:  J Struct Biol X       Date:  2022-07-19
  2 in total

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