Literature DB >> 29931970

Collagen Structure-Function Relationships from Solid-State NMR Spectroscopy.

Ieva Goldberga1, Rui Li1, Melinda J Duer1.   

Abstract

The extracellular matrix of a tissue is as important to life as the cells within it. Its detailed molecular structure defines the environment of a tissue's cells and thus their properties, including differentiation and metabolic status. Collagen proteins are the major component of extracellular matrices. Self-assembled collagen fibrils provide both specific mechanical properties to handle external stresses on tissues and, at the molecular level, well-defined protein binding sites to interact with cells. How the cell-matrix interactions are maintained against the stresses on the tissue is an important and as yet unanswered question. Similarly, how collagen molecular and fibrillar structures change in aging and disease is a crucial open question. Solid-state NMR spectroscopy offers insight into collagen molecular conformation in intact in vivo and in vitro tissues, and in this Account we review how NMR spectroscopy is beginning to provide answers to these questions. In vivo 13C,15N labeling of the extracellular matrix has given insight into collagen molecular dynamics and generated multidimensional NMR "fingerprints" of collagen molecular structure that allow comparison of local collagen conformation between tissues. NMR studies have shown that charged collagen residues (Lys, Arg) adopt extended-side-chain conformations in the fibrillar structure to facilitate charge-charge interactions between neighboring collagen molecules, while hydrophobic residues (Leu, Ile) fold along the collagen molecular axis to minimize the hydrophobic area exposed to surrounding water. Detailed NMR and molecular modeling work has shown that the abundant Gly-Pro-Hyp (Hyp = hydroxyproline) triplets in collagen triple helices confer well-defined flexibility because the proline is conformationally metastable, in contrast to the expectation that these triplets confer structural rigidity. The alignment of the Gly-Pro-Hyp triplets within the fibril structure means that the Gly-Pro-Hyp molecular flexibility generates fibril flexibility. The fibrillar bands of Gly-Pro-Hyp are highly correlated with collagen ligand binding sites, leading to the hypothesis that the fibril alignment of Gly-Pro-Hyp triplets is essential to protect collagen-ligand binding against external stresses on the tissue. Non-enzymatic chemistry between collagen side-chain amine groups (Lys, Arg) and reducing sugars-glycation-is an important source of matrix structural change in aging and disease. Glycation leads to stiffening of collagen fibrils, which is widely speculated to be the result of intermolecular cross-linking. The chemistry of non-enzymatic glycation has been extensively detailed through NMR studies and has been shown to lead to side-chain modifications as the majority reaction products, rather than intermolecular cross-links, with resultant molecular misalignment in the fibrils. Thus, a picture is beginning to emerge in which collagen glycation causes stiffening through misalignment of collagen molecular flexible regions rather than intermolecular cross-linking, meaning that new thinking is needed on how to alleviate collagen structural changes in aging and disease.

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Year:  2018        PMID: 29931970     DOI: 10.1021/acs.accounts.8b00092

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  12 in total

1.  Dynamic nuclear polarization-enhanced, double-quantum filtered 13C-13C dipolar correlation spectroscopy of natural 13C abundant bone-tissue biomaterial.

Authors:  Sungsool Wi; Navneet Dwivedi; Richa Dubey; Frederic Mentink-Vigier; Neeraj Sinha
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2.  Discovering design principles of collagen molecular stability using a genetic algorithm, deep learning, and experimental validation.

Authors:  Eesha Khare; Chi-Hua Yu; Constancio Gonzalez Obeso; Mario Milazzo; David L Kaplan; Markus J Buehler
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

3.  Lysozyme is Sterically Trapped Within the Silica Cage in Bioinspired Silica-Lysozyme Composites: A Multi-Technique Understanding of Elusive Protein-Material Interactions.

Authors:  Francesco Bruno; Lucia Gigli; Giovanni Ferraro; Andrea Cavallo; Vladimir K Michaelis; Gil Goobes; Emiliano Fratini; Enrico Ravera
Journal:  Langmuir       Date:  2022-06-23       Impact factor: 4.331

4.  ColGen: An end-to-end deep learning model to predict thermal stability of de novo collagen sequences.

Authors:  Chi-Hua Yu; Eesha Khare; Om Prakash Narayan; Rachael Parker; David L Kaplan; Markus J Buehler
Journal:  J Mech Behav Biomed Mater       Date:  2021-10-31

5.  Harnessing biomolecules for bioinspired dental biomaterials.

Authors:  Nicholas G Fischer; Eliseu A Münchow; Candan Tamerler; Marco C Bottino; Conrado Aparicio
Journal:  J Mater Chem B       Date:  2020-08-04       Impact factor: 6.331

6.  Design Parameters of Tissue-Engineering Scaffolds at the Atomic Scale.

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Journal:  Angew Chem Int Ed Engl       Date:  2019-10-30       Impact factor: 15.336

Review 7.  Bioactive potential of natural biomaterials: identification, retention and assessment of biological properties.

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Journal:  Signal Transduct Target Ther       Date:  2021-03-19

Review 8.  Dihedral Angle Measurements for Structure Determination by Biomolecular Solid-State NMR Spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Front Mol Biosci       Date:  2021-12-06

Review 9.  Collagen at the maternal-fetal interface in human pregnancy.

Authors:  Jia-Wei Shi; Zhen-Zhen Lai; Hui-Li Yang; Shao-Liang Yang; Cheng-Jie Wang; Deng Ao; Lu-Yu Ruan; Hui-Hui Shen; Wen-Jie Zhou; Jie Mei; Qiang Fu; Ming-Qing Li
Journal:  Int J Biol Sci       Date:  2020-05-25       Impact factor: 6.580

10.  Carbamylation and glycation compete for collagen molecular aging in vivo.

Authors:  Camille Nicolas; Stéphane Jaisson; Laëtitia Gorisse; Frédéric J Tessier; Céline Niquet-Léridon; Philippe Jacolot; Christine Pietrement; Philippe Gillery
Journal:  Sci Rep       Date:  2019-12-04       Impact factor: 4.379

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