Rebecca Elias1, Pallabita Basu1, Micha Fridman1. 1. School of Chemistry, Raymond & Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 6997801, Israel.
Abstract
When used in combination with azole antifungal drugs, cyclooxygenase (COX) inhibitors such as ibuprofen improve antifungal efficacy. We report the conjugation of a chiral antifungal azole pharmacophore to COX inhibitors and the evaluation of activity of 24 hybrids. Hybrids derived from ibuprofen and flurbiprofen were considerably more potent than fluconazole and comparable to voriconazole against a panel of Candida species. The potencies of hybrids composed of an S-configured azole pharmacophore were higher than those with an R-configured pharmacophore. Tolerance, defined as the ability of a subpopulation of cells to grow in the presence of the drug, to the hybrids was lower than to fluconazole and voriconazole. The hybrids were active against a mutant lacking CYP51, the target of azole drugs, indicating that these agents act via a dual mode of action. This study established that azole-COX inhibitor hybrids are a novel class of potent antifungals with clinical potential.
When used in combination with azole antifungal drugs, cyclooxygenase (COX) inhibitors such as ibuprofen improve antifungal efficacy. We report the conjugation of a chiral antifungal azole pharmacophore to COX inhibitors and the evaluation of activity of 24 hybrids. Hybrids derived from ibuprofen and flurbiprofen were considerably more potent than fluconazole and comparable to voriconazole against a panel of Candida species. The potencies of hybrids composed of an S-configured azole pharmacophore were higher than those with an R-configured pharmacophore. Tolerance, defined as the ability of a subpopulation of cells to grow in the presence of the drug, to the hybrids was lower than to fluconazole and voriconazole. The hybrids were active against a mutant lacking CYP51, the target of azole drugs, indicating that these agents act via a dual mode of action. This study established that azole-COX inhibitor hybrids are a novel class of potent antifungals with clinical potential.
Although humans and
yeast have been evolving along different paths
over a period of about a billion years, there is still a significant
resemblance between the genomes of human and both friendly and pathogenic
yeast.[1−5] Approximately one-third of the genes found in the human genome have
counterparts in the genomes of yeast; amino acid sequences of the
human proteome overlap by more than 30% with those of the yeast proteome.[6] Moreover, when 414 human genes were inserted
into yeast cells one at a time, approximately 50% of them were found
to be functional and facilitated the survival of the yeast cells.[7] It is, therefore, no wonder that, compared to
the relative abundance of unique drug targets in bacteria, few such
targets are suitable for selective inhibition of essential cellular
processes in pathogenic fungi.Prevention and treatment of fungal
infections currently relies
on a relatively limited number of antifungal drugs in only four major
drug classes: azoles, echinocandins, allylamines, and polyenes.[8−10] The incidence of fungal infections has risen sharply in recent decades
due to growing numbers of immunosuppressed persons and higher prevalence
of drug-resistant pathogenic fungi.[11,12] Global epidemics
are increasingly being caused by drug-resistant (and multidrug-resistant)
fungal pathogens, including Aspergillus fumigatus, Candida glabrata, Cryptococcus neoformans,[5,13−16] and, more recently, Candida auris, a pathogen with the potential for extensive multidrug resistance.[17−20] Notably, infections with drug-resistant fungi are associated with
mortality rates in the range of 50%, granting them high priority for
new drug development.[21−24] An increasingly favored approach to rapidly overcome the shortage
in fungal drug targets and drug classes is to enhance the efficacy
of existing antifungal drugs through combination therapies.[25] To date, several FDA-approved drugs have been
reported to synergize with antifungal drugs, including inhibitors
of Hsp90, calcineurin, TOR, and PKC pathways, and drug efflux inhibitors.[5,26−29]Several clinically used nonsteroidal anti-inflammatory drugs
that
act by inhibiting cyclooxygenase (COX) enzymes, including ibuprofen,
aspirin, and indomethacin, have been shown to possess moderate antifungal
activity; the mechanism is unknown.[30−33] When used in combination with
the most commonly used antifungal azole drug fluconazole (FLC, Scheme A), COX
inhibitors significantly improve antifungal efficacy in vitro.[34,35] The antifungal efficacy of this type of combination was validated
in animal models.[36,37] For example, ibuprofen was shown
to effectively synergize with FLC against azole-resistant C. albicans.[34,38] A similar effect was
observed for a combination of FLC and FK506, a 23-membered-ring
macrolide immunosuppressant, that also acts as a broad-spectrum inhibitor
of pleiotropic drug resistance ATP-binding cassette transporters.[26,39,40]FLC-resistant isolates
revert to FLC susceptible after incubation with ibuprofen
yet retain high levels of expression of CDR1 and CDR2 efflux pumps.[41] It was shown that ibuprofen can alter the expression
of the genes encoding the efflux pumps and that it may also act directly
as an efflux pump blocker.[42,43]
Scheme 1
(A) Structure of
Clinically Used Antifungal Azole Drugs Fluconazole
and Voriconazole; (B) Synthesis of Enantiomerically Pure Antifungal
Azole Pharmacophores; (C) Synthesis of Crystallizable N-tosyl Derivatives of the Enantiomerically Pure Pharmacophores and
X-ray Structures Confirming Their Absolute Configuration
The arachidonic acid pathway has been associated
with the yeast-to-hyphae
morphogenesis in several species of Candida,[44,45] the most commonly diagnosed pathogens causing
fungal-born infectious diseases in humans.[46,47] In mammals, nonsteroidal anti-inflammatory drugs such as COX inhibitors
reduce the formation of prostaglandins generated via the arachidonic
acid pathway.[48] Prostaglandins are involved
in the morphogenesis and pathogenicity of yeast and mediate the host
inflammatory response.[32,49] Prostaglandin E2 (PGE2) regulates growth and colonization and promotes the formation of
biofilms of several Candida species.[50,51] Several studies have shown that reduced PGE2 production
limits the virulence of pathogenic fungi, suggesting that the use
of inhibitors of the arachidonic acid pathway could improve outcomes
of fungal infections.[36,44,45]Physicians are reluctant to prescribe COX inhibitors to patients
with infections due to their anti-inflammatory effects as these agents
reduce the ability of the innate immune system to combat the pathogen.
The efficacy of combination treatments heavily relies on the pharmacokinetic
and pharmacodynamic properties of each of the drugs in the combination.[52] Moreover, COX-inhibiting drugs are known to
induce gastrointestinal irritation. COX-1 is mainly responsible for
mucus formation in the gastrointestinal tract and its inhibition is
therefore blamed for inducing irritation.[53−56] These effects have been attributed
to the carboxylic acid functionality that is common to all classical
COX-inhibiting nonsteroidal anti-inflammatory drugs.[57,58] Ester and amide derivatives of these drugs maintain COX inhibition
but cause less gastrointestinal problems, suggesting that the carboxylic
acid group present in these drugs may not be required for COX inhibition.[59,60] Based on these observations, in this study, we sought to incorporate
the antifungal properties of COX inhibitors with those of antifungal
azoles by conjugating the amine-functionalized pharmacophore of FLC to different COX inhibitors via their carboxylic acid
to form hybrid drugs. We report here on the synthesis and in vitro
efficacies of dual-acting antifungals composed of the pharmacophore
of FLC and a collection of clinically used COX inhibitors.
Results
and Discussion
Synthesis of Diastereoisomers and Enantiomers
of Azole-COX Inhibitor
Hybrids
To synthesize the hybrids composed of an antifungal
azole pharmacophore and a COX inhibitor, we prepared racemic mixture 1a, the azide-functionalized pharmacophore of the first and
second-generation antifungal azole drugs FLC and voriconazole
(VOR) (Scheme A) as we previously reported.[61] Enantiomerically pure 1a-( and 1a-( were readily obtained by HPLC using
a preparative amylose-based chiral resolution column (Scheme B). The azide-functionalized
pharmacophores 1a-( and 1a-( were then subjected to catalytic hydrogenation
to afford the corresponding amine-functionalized derivatives 1b-( and 1b-(, respectively (Scheme B). The absolute configurations of the two amine-functionalized enantiomers
of the azole pharmacophore were assigned by solving the X-ray structures
of crystals of the two enantiomerically pure N-tosyl
derivatives of the amine-functionalized derivatives 1b-( and 1b-(, which
readily crystalized from acetonitrile (Scheme C).We generated 24 hybrids by forming
an amide bond between the primary amine of the azole pharmacophore
and the carboxylic acid of the COX inhibitor following the strategies
described in Scheme A. Four of the COX inhibitors, ibuprofen, flurbiprofen, naproxen,
and ketoprofen, contain a chiral center and were used for the generation
of all four diastereomers of each hybrid (1–4, 5–8, 9–12, and 13–16, respectively, Scheme B). The achiral COX inhibitors niflumic acid, diflunisal, salicylic
acid and diclofenac were used in the synthesis of enantiomeric azole
pairs (17–, respectively, Scheme B).
Scheme 2
(A) General
Synthesis of Hybrids 1–24; (B) Structures
of the 24 COX Inhibitor-Azole Hybrids Synthesized
Hybrids 1–4 and 9–12 were prepared by coupling of an enantiomerically
pure COX inhibitor to racemate 1b (Scheme A). Hybrids 5, 6, 13, and 14 were prepared by coupling
the enantiomerically pure amine-functionalized azole pharmacophore 1b-( to a racemate of the COX inhibitors.
Hybrids 17, 19, 21, and 23 were prepared by coupling the enantiomerically pure amine-functionalized
azole pharmacophore 1b-( to achiral
COX inhibitors. The same strategy was applied for the preparation
of hybrids 7, 8, 15, 16, 18, 20, 22, and 24 from the enantiomerically pure amine-functionalized azole
pharmacophore 1b-( (Scheme A). The purities of the 24
hybrids were determined by chiral semi-preparative HPLC column and
confirmed to be ≥95% (Table S1, Figures S2–S25). The structures of the hybrids synthesized were
verified using 1H, 13C, and 19F NMR
(Figures S28–S99) and HRMS.
Antifungal
Potencies of the Hybrids and the Effects of Chiral
Centers
The antifungal activities of the 24 azole-COX inhibitor
hybrids were evaluated against a panel of 16 strains representing
seven different species of the genus Candida. Candida species cause both superficial
and systemic infections.[62] The panel included
strains of C. albicans, C. glabrata, C. parapsilosis, C. tropicalis, C.
guilliermondii, C. dubliniensis, and C. auris (for strains information
see Table S2 in the Supporting Information).
To evaluate the antifungal activity, we determined minimal inhibitory
concentration 80% (MIC80) values, which were defined as
the lowest drug concentrations with turbidity (measured at OD600) less than or equal to that of specific 1:5 dilutions of
the growth control. As controls we tested FLC and VOR. MIC80 values of the 24 hybrids and of the
control azole drugs against the 16 Candida strains tested are summarized in Figure and in Tables S3–S6 in the Supporting Information.
Figure 1
Antifungal activities (MIC80 values) of clinically used FLC and VOR and of the three most potent azole-COX
inhibitor hybrids 1, 2, and 5. MIC80 values were determined using the broth microdilution
method over a concentration range of 0.003–64 μg/mL.
Orange circles represent C. albicans strains, yellow circles represent C. glabrata strains, and green circles represent C. parapsilosis, C. tropicalis, C.
dubliniensis, and C. auris. Cells were grown in YPAD medium at 30 °C (For C. auris strains 37 °C) for 24 h. Each concentration
was tested in triplicate, and the results were confirmed in at least
two independent experiments.
Antifungal activities (MIC80 values) of clinically used FLC and VOR and of the three most potent azole-COX
inhibitor hybrids 1, 2, and 5. MIC80 values were determined using the broth microdilution
method over a concentration range of 0.003–64 μg/mL.
Orange circles represent C. albicans strains, yellow circles represent C. glabrata strains, and green circles represent C. parapsilosis, C. tropicalis, C.
dubliniensis, and C. auris. Cells were grown in YPAD medium at 30 °C (For C. auris strains 37 °C) for 24 h. Each concentration
was tested in triplicate, and the results were confirmed in at least
two independent experiments.Of the 24 hybrids, three stood out as the most potent agents with
the lowest MIC80 values against all of the azole-susceptible
strains in the panel: ibuprofen-based hybrids 1 and 2 and flurbiprofen-based hybrid 5 (Figure ). Of these three hybrids,
ibuprofen-based azole 1 had the most potent activity
against the majority of the azole-susceptible strains in the panel;
this hybrid was up to two orders of magnitude more potent than FLC and was as potent as VOR.In search
of structure–activity relationships, we next analyzed
the results of the antifungal activity tests in the context of the
chiral center or centers of the hybrids. Our analysis revealed a clear
connection between the absolute configuration of the chiral center
at the benzylic carbon of the azole pharmacophore segment in both
the diastereomeric tetrads and enantiomeric pairs. In all cases, the
antifungal activity of hybrids with an S-configured
benzylic carbon of the azole pharmacophore segment had higher potency
than the corresponding hybrids with the R-configured
center. Selected examples of two tetrads (ibuprofen-based 1–4 and flurbiprofen-based 5–8) and two enantiomeric pairs (niflumic acid-based 17 and 18 and diflunisal-based 19 and 20), which demonstrate the superior activity of the S- vs R-configured benzylic carbon against
the azole pharmacophore are presented in Figure .
Figure 2
The effect of chirality on antifungal activity
against C. albicans strains. Black
circles represent MIC80 values of FLC and VOR. Blue circles
represent MIC80 values of hybrids composed of an S-configured azole pharmacophore, and pink circles represent
MIC80 values of hybrids composed of an R-configured azole pharmacophore.
The effect of chirality on antifungal activity
against C. albicans strains. Black
circles represent MIC80 values of FLC and VOR. Blue circles
represent MIC80 values of hybrids composed of an S-configured azole pharmacophore, and pink circles represent
MIC80 values of hybrids composed of an R-configured azole pharmacophore.No general correlation could be made between antifungal potency
and the chiral center of the COX inhibitor segments of the diastereomeric
tetrads; rather, the results depended on the specific COX inhibitor.
For example, hybrid 3 composed of R-configured
ibuprofen was more potent than the corresponding S-configured ibuprofen hybrid 4. In the flurbiprofen
tetrad, however, the S-configured flurbiprofen hybrid 5 was more potent than the corresponding R-configured ibuprofen hybrid 6 (Figure ). Of note, the chiral center of the azole
pharmacophore markedly affected the antifungal activity of the hybrids,
and the modest contribution of the chiral center of the COX inhibitor
supports the hypothesis that the main target of these dual-acting
antifungals is CYP51, the target of the azole class of antifungals.
The investigation of the antifungal activity indicated that hybrids
prepared by conjugation of the carboxylic acid of COX inhibitors to
the amine-functionalized pharmacophore of the azole drug FLC can have markedly improved antifungal activity compared to that
of FLC and comparable to that of the potent second-generation
azole VOR.
Candida Tolerance
to Azole-COX
Inhibitor Hybrids Is Lower Than That to FLC and VOR
The majority
of treatment failures for patients with invasive candidiasis are caused
by apparently susceptible isolates.[63] For
example, during a clinical trial on the treatment of invasive candidiasis,
the drug anidulafungin, which belongs to the echinocandin class of
antifungal drugs that act by inhibiting cell-wall formation,[64,65] was significantly superior to FLC, although the vast
majority of isolates were susceptible to both drugs.[66] Apparently susceptible isolates resist antifungal drugs
by exhibiting tolerance, defined as the ability of a subpopulation
of cells to grow slowly at supra-MIC concentrations. Activation of
tolerance mechanisms depends on stress response pathways.[67] Tolerance is, therefore, mechanistically distinct
from resistance that relies upon mechanisms that are constantly under
alert and do not require activation by stress response signals. Since
the subpopulation exhibiting antifungal tolerance is usually characterized
by slow growth, it becomes visually detectible after at least 48 h
of growth in the presence of the drug, whereas resistance is generally
evident after 24 h.[67] The level of tolerance
varies between isolates presumably due to genetic differences, and
even within a single genetic isolate, tolerance responses of individual
cells may differ significantly.[67] Tolerance
is thus the result of physiological or epigenetic differences rather
than genetic variation. Clinical isolates that cause persistent infections
and that fail to respond to a single course of FLC have
higher intrinsic tolerance levels than those isolates that cause nonpersistent
infections that are cleared with a single FLC course.[67] This suggests that measurement of tolerance
may provide useful prognostic information and there is a need for
development of drugs that are unaffected by tolerance. To investigate
how tolerance is affected by the azole-COX inhibitor hybrids, we compared
hybrids 1 and 5 to FLC and VOR in a disk diffusion assay. Tolerance was evaluated by
comparing the zone of inhibition after 24 h to that after 48 h. The
assay was carried out on three representative strains: C. albicans, C. parapsilosis, and C. tropicalis (Figure ).
Figure 3
Compared to FLC and VOR, azole-COX inhibitor
hybrids 1 and 5 display reduced tolerance
measured by disk diffusion assays. Disk diffusion assays were carried
out on casitone agar plates containing disks loaded with 25 μg
of the tested hybrids. Plates were imaged after 24 h to evaluate antifungal
activity (left half of the plate image) and after 48 h to evaluate
tolerance (right half of the plate image).
Compared to FLC and VOR, azole-COX inhibitor
hybrids 1 and 5 display reduced tolerance
measured by disk diffusion assays. Disk diffusion assays were carried
out on casitone agar plates containing disks loaded with 25 μg
of the tested hybrids. Plates were imaged after 24 h to evaluate antifungal
activity (left half of the plate image) and after 48 h to evaluate
tolerance (right half of the plate image).After 48 h of incubation with FLC or VOR disks, the zones of inhibition that had appeared after 24 h of incubation
in plates seeded with C. albicans SN152
or with C. parapsilosis ATCC 22019
were covered by drug tolerant colonies; the drug tolerant subpopulation
was smaller for C. tropicalis 660.
All three tested strains displayed reduced tolerance to both hybrids 1 and 5 compared to the tolerance to FLC and VOR with the most pronounced effect observed in C. tropicalis 660 plates (Figure ). No correlation could be made between MIC80 values and the level of tolerance. For example, the MIC80 values of 5, and VOR against C. parapsilosis 22019 were 0.5 μg/mL, and 0.015
μg/mL, respectively (Table S6), whereas
the observed tolerance of this strain to hybrid 5 was
lower than that to VOR (Figure ). Since VOR acts predominantly
by inhibition CYP51, this suggests that the observed reduced tolerance
to the azole-COX inhibitor hybrids is not exclusively due to inhibition
of CYP51 and that the antifungal effect of their COX inhibitor segment
is likely responsible for the reduction in tolerance to these agents.
Dual-Acting Azole-COX Inhibitor Hybrids Act Predominantly by
Inhibiting Ergosterol Biosynthesis
It is well established
that clinically used azole antifungals including FLC and VOR act primarily by preventing ergosterol biosynthesis via
inhibition of CYP51.[68,69] We asked if fungal growth inhibition
by the dual-acting hybrids requires the presence of the ERG11 gene that encodes CYP51.[70] The antifungal
activities of hybrids 1 and 5 and of FLC and VOR were determined against an erg3ΔΔ/erg11ΔΔ
mutant C. albicans strain and against C. albicans SN152 from which this double knockout
strain was derived (Table S2). The erg3ΔΔ/erg11ΔΔ
mutant is viable despite lacking CYP51, which is essential for aerobic
growth unless ERG3, which encodes a C-5 sterol desaturase,
is inactive.[71] Yeast growth was followed
at OD600 over 48 h in 96-well plates containing serial
double dilutions of the tested hybrids. The results are summarized
in Figure .
Figure 4
The effect
of azole-COX inhibitor hybrids 1 and 5 on
the growth of C. albicans lacking CYP51,
the target of antifungal azoles. Cells of erg3ΔΔ/erg11ΔΔ
mutant C. albicans were grown in YPAD
media at 30 °C and treated with different concentrations of the
tested hybrids. Growth was measured by recording the OD600 values every 40 min over a 48 h course on an automated plate reader.
The effect
of azole-COX inhibitor hybrids 1 and 5 on
the growth of C. albicans lacking CYP51,
the target of antifungal azoles. Cells of erg3ΔΔ/erg11ΔΔ
mutant C. albicans were grown in YPAD
media at 30 °C and treated with different concentrations of the
tested hybrids. Growth was measured by recording the OD600 values every 40 min over a 48 h course on an automated plate reader.As expected, when CYP51 is not present, no significant
effect on
the growth of the double knockout mutant was observed for the entire
range of concentrations of FLC. Modest reduction in growth
was observed in wells treated with VOR at 64 μg/mL,
the highest concentration tested, presumably due to nonspecific effects
of the drug at this high concentration. In contrast, a clear dose-dependent
reduction in growth was evident in wells containing hybrids 1 or 5. Dose-dependent growth reduction was also
observed in the presence of free ibuprofen and flurbiprofen, from
which hybrids 1 and 5, respectively, were
derived. This supports that the CYP51-independent antifungal effect
of the azole-COX inhibitor hybrids 1 and 5 results from their COX inhibitor segments. Of note, the MIC80 values of hybrids 1 and 5 against
the erg3ΔΔ/erg11ΔΔ
mutant C. albicans strain were 64 μg/mL
while FLC and VOR were inactive (Table S4). The MIC80 values of these
hybrids against C. albicans SN152,
the parent strain of the erg3ΔΔ/erg11ΔΔ mutant were 0.003 μg/mL and 0.007
μg/mL, respectively (Table S4). The
high MIC80 values against the erg3ΔΔ/erg11ΔΔ mutant relative to those against the
parent strain support our hypothesis that the contribution to the
antifungal activity of the COX-inhibiting segment in these dual-acting
agents is modest compared to that of the inhibition of CYP51.
Conclusions
It was previously established that nonsteroidal COX-inhibiting
anti-inflammatory drugs and azole antifungals synergize to improve
antifungal potency. Combination therapies can be affected by differences
in pharmacological properties and by side effects of the drugs in
the combination. With the goal of overcoming such potential limitations
for combinations of azole antifungals and COX inhibitors, we synthesized
a novel type of antifungals by linking an azole pharmacophore with
a COX inhibitor to form a hybrid drug molecule. These hybrids were
prepared by conjugation of a chiral azole pharmacophore to a collection
of chiral and achiral COX inhibitors to form 24 chiral hybrids.The antifungal activity profiles of the hybrids were tested against
a diverse panel of Candida representing
seven of the most encountered species of this common fungal pathogen
and compared to the activities of the clinically used azole drugs FLC and VOR. The antifungal activities of several
hybrids were superior to that of FLC. Two hybrids, ibuprofen-based 1 and flurbiprofen-based 5, stood out due to
potency significantly higher than FLC and comparable
to VOR. Structure–activity relationship analysis
revealed that all hybrids with an S-configured azole
pharmacophore were more potent antifungals than the corresponding
hybrids with an R-configured azole pharmacophore.
No such generalization could be made for the chiral COX inhibitors.
In all hybrids with a chiral COX inhibitor, the contribution of the
chiral center of the azole pharmacophore to the antifungal activity
of the hybrids was markedly higher compared to that of the chiral
center of the COX inhibitor.Importantly, analysis of tolerance,
defined as the ability of a
subpopulation of cells to grow in the presence of the drug, revealed
that yeast cultures were less likely to be tolerant in the presence
of the hybrids 1 and 5 than in the presence
of FLC and VOR. Clinical isolates with high
tolerance are associated with persistent infections, suggesting that
lower levels of tolerance to a drug may reduce the chances of the
persistence and/or reoccurrence of the infection.Mechanistic
investigation revealed that unlike the clinically used FLC and VOR that target CYP51 as their main mode
of action, hybrids 1 and 5 retained activity
against an erg3ΔΔ/erg11ΔΔ mutant C. albicans strain,
which lacks CYP51. This activity was significantly lower, however,
than the activity of these hybrids against the parent C. albicans strain from which the mutant lacking
the target was derived. This indicates that the antifungal activity
of these dual-acting hybrids results mainly from the inhibition of
CYP51 yet, unlike FLC and VOR, the hybrids
also act via a second mode of action contributed by the COX-inhibiting
segment.This study offers guidelines for development of potent
antifungal
agents that incorporate the antifungal activities of azole antifungals
and COX inhibitors in hybrid molecules. These new antifungals display
potent antifungal activity and, importantly, reduced levels of tolerance.
The dual-acting hybrids described here offer attractive leads for
further clinical development.
Experimental Section
Chemistry
General
Methods and Instrumentation
1H-NMR
spectra (including one-dimensional total correlation spectroscopy
(1D-TOCSY)) were recorded on BrukerAvance 400 or 500 MHz spectrometers,
and chemical shifts (reported in ppm) were calibrated to CD3OD (δ = 3.31). 13C-NMR spectra were recorded on
BrukerAvance 400 or 500 MHz spectrometers at 100 or 125 MHz, respectively. 19F-NMR spectra were recorded on BrukerAvance 400 or 500 MHz
spectrometers at 375 or 470 MHz, respectively. Multiplicities are
reported using the following abbreviations: s = singlet, d = doublet,
t = triplet, q = quartet, dd = doublet of doublets, m = multiplet.
Coupling constants (J) are given in Hz. High-resolution
electrospray ionization (HRESI) mass spectra were measured on a Waters
Synapt instrument. Chemical reactions were monitored by thin-layer
chromatography (TLC) (Merck, Silica gel 60 F254). Visualization
was achieved using a cerium molybdate stain (5 g (NH4)2Ce(NO3)6, 120 g (NH4)6Mo7O24·4H2O, 80 mL H2SO4, 720 mL H2O) or with UV lamp. All
chemicals, unless otherwise stated, were obtained from commercial
sources. Reaction products were purified using Geduran Si 60 chromatography
(Merck). The preparative reverse-phase high-pressure liquid chromatography
(RP-HPLC) system used was an ECOM system equipped with a 5-μm,
C-18 Phenomenex Luna Axia column (250 mm × 21.2 mm). The mobile
phase was acetonitrile in H2O, and the gradient was from
10 to 90% acetonitrile. The flow rate was 20 mL/min. Chiral semi-preparative
high-pressure liquid chromatography (HPLC) used was performed on an
ECOM system equipped with a 5-μm i-Amylose-3 Phenomenex Lux
column (250 mm × 10 mm). The flow rate was 5 mL/min.
Crystallographic Data
Deposition Numbers 2116277 and
2166299 contain the supplementary crystallographic data for this paper.
These data are provided free of charge by the joint Cambridge Crystallographic
Data Centre.
Azole-Ibuprofen Hybrids (1 and 4)
S-Ibuprofen (95 mg, 0.46 mmol) was dissolved in
dry DMF (2 mL) under argon at 0 °C and then treated with HATU
(280 mg, 0.74 mmol) and DIPEA (0.27 mL, 1.55 mmol) and stirred for
10 min at 0 °C. To the reaction mixture, racemate 1b (103 mg, 0.41 mmol) was added, and the solution was stirred at room
temperature. The reaction was monitored by TLC (MeOH/DCM, 1:9). Upon
completion after 3 h, the product was extracted with ethyl acetate,
washed with H2O, dried over MgSO4, and concentrated
to give the crude diastereomers. The concentrated crude was purified
by column chromatography on SiO2 using a gradient of MeOH/DCM
as eluent to afford the diastereomer mix. The diastereomers were separated
by preparative RP-HPLC to afford hybrids 1 and 4.
Preparation of Stock Solutions of the Tested Compounds
Hybrids 1–24 were dissolved in anhydrous
DMSO to final concentrations of 5 mg/mL. The antifungal drugs FLC
and VOR were purchased from Sigma Aldrich were dissolved in anhydrous
DMSO to final concentrations of 5 mg/mL.
C. auris minimal inhibitory concentrations
(MICs) were determined using CLSI M27-A3 guidelines with minor modifications.
Starter cultures were streaked from glycerol stock onto YPAD agar
plates and grown for 24 h at 37 °C. Colonies were suspended in
1 mL of PBS and diluted to 1 × 10–3 optical
density at 600 nm (OD600) and then diluted 1:100 into fresh
medium. Hybrids dissolved in DMSO were added to YPAD broth (32 μL
of stock solution in 1218 μL of YPAD broth), and serial double
dilutions of hybrids in YPAD were prepared in flat-bottomed 96-well
microplates (Corning) to enable testing of concentrations ranging
from 64 to 0.007 μg/mL. Control wells with yeast cells but no-drug
and blank wells containing only YPAD were prepared. An equal volume
(100 μL) of yeast suspension in YPAD broth was added to each
well with the exceptions of the blank wells. After incubation for
24 h at 37 °C, MTT (50 μL of a 1 mg/mL solution in ddH2O) was added to each well followed by additional incubation
at 37 °C for 2 h. MIC values (Table S3) were defined as the lowest concentration of an antifungal agent
that caused a specified reduction in visible growth as per the CLSI
M27-A3 protocol. The magnitude of reduction in visible growth was
assessed using the following numerical scale: 0, optically clear;
1, slightly hazy; 2, prominent decrease (∼50%) in visible growth;
3, slight reduction in visible growth; and 4, no reduction in visible
growth. The MIC was defined based on a reduction in growth to 0 or
1. Results were confirmed in two independent experiments, and each
concentration was tested in triplicate. FLC and VOR were used as control
drugs.C. albicans, C. glabrata, C. parapsilosis, C. guilliermondii, C. tropicalis, and C. dubliniensis MICs were determined using CLSI M27-A3 guidelines with minor modifications.
Starter cultures were streaked from glycerol stock onto YPAD agar
plates and grown for 24 h at 30 °C. Colonies were suspended in
1 mL PBS and diluted to 1 × 10–3 OD600 and then diluted 1:100 into fresh medium. Hybrids dissolved in DMSO
were added to YPAD broth (32 μL of stock solution in 1218 μL
of YPAD broth), and serial double dilutions of hybrids in YPAD were
prepared in flat-bottomed 96-well microplates (Corning) to enable
testing of concentrations ranging from 64 to 0.003 μg/mL. Control
wells with yeast cells but no-drug and blank wells containing only
YPAD were prepared. An equal volume (100 μL) of yeast suspensions
in YPAD broth was added to each well with the exceptions of the blank
wells. MIC values (Tables S4–S6)
were determined after 24 h at 30 °C by measuring the OD600 using a plate reader (Infinite M200 PRO, Tecan). MIC values were
defined as the point at which the OD600 was reduced by
≥80% compared to the no-drug wells. Each concentration was
tested in triplicate, and results were confirmed by two independent
sets of experiments. FLC and VOR were used as control drugs.
Disk
Diffusion Assay
Antifungal activities of select
hybrids against C. albicans SN152, C. parapsilosis ATCC 22019, and C.
tropicalis 660 were confirmed by the disk diffusion
assay. Strains were streaked from frozen culture onto YPAD agar and
incubated for 24 h at 30 °C. Two or three colonies were placed
into 1 mL of PBS solution, and OD600 was determined with
a TECAN Infinite. OD600 was adjusted to 0.02 for C. albicans SN152 and to 0.025 for C. parapsilosis ATCC 22019 and C.
tropicalis 660 by dilution with PBS. Aliquots of 200
μL of the diluted cultures of each strain were plated onto 15-mL
casitone agar plates and spread using sterile beads (3 mm, Fisher
Scientific). After the plates dried, a single disk (6-mm diameter,
Becton Dickinson) with 25 μg of the hybrid being tested was
placed in the center of each plate. Plates were then incubated at
30 °C and photographed under the same imaging conditions after
24 and 48 h. FLC and VOR were used as control drugs.
Growth Curve
Analyses
Growth curves were determined
using the double-dilution method in 96-well plates. Starter cultures
were streaked from glycerol stock onto YPAD agar plates and grown
for 24 h at 30 °C. Colonies were suspended in 1 mL of PBS and
diluted to 1 × 10–3 OD600 and then
diluted 1:100 into fresh medium. Hybrids dissolved in DMSO were added
to YPAD broth (32 μL of stock solution in 1218 μL of YPAD
broth), and serial double dilutions of hybrids in YPAD were prepared
in flat-bottomed 96-well microplates (Corning) to enable testing of
concentrations ranging from 64 to 1 μg/mL. Control wells with
yeast cells but no-drug (100% growth) and blank wells containing only
YPAD (0% growth) were prepared. An equal volume (100 μL) of
yeast suspensions in YPAD broth was added to each well with the exceptions
of the blank wells. Growth was determined at 30 °C by measuring
the OD600 using a plate reader (Infinite M200 PRO, Tecan)
every 40 min over 48 h. Each concentration was tested in triplicate,
and results were confirmed by two independent sets of experiments.
FLC and VOR were used as control drugs.
Authors: Shantelle L LaFayette; Cathy Collins; Aimee K Zaas; Wiley A Schell; Marisol Betancourt-Quiroz; A A Leslie Gunatilaka; John R Perfect; Leah E Cowen Journal: PLoS Pathog Date: 2010-08-26 Impact factor: 6.823