| Literature DB >> 35084450 |
Amanda C Perofsky1, Stefano Tempia2,3, Jeremy Bingham4, Caroline Maslo5, Mande Toubkin6, Anchen Laubscher5, Sibongile Walaza2,3, Juliet R C Pulliam4, Cécile Viboud1, Cheryl Cohen2,3.
Abstract
BACKGROUND: The coronavirus disease 2019 (COVID-19) pandemic caused severe disruptions to healthcare in many areas of the world, but data remain scarce for sub-Saharan Africa.Entities:
Keywords: COVID-19; healthcare; lockdown; social distancing; sub-Saharan Africa
Mesh:
Year: 2022 PMID: 35084450 PMCID: PMC8807275 DOI: 10.1093/cid/ciac055
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 20.999
Timeline of National Coronavirus Disease 2019 Response in South Africa
| Lockdown Alert Level | Dates | Restrictions |
|---|---|---|
| Pre-lockdown period | 1 March 2020–26 March 2020 | • March 5: First confirmed coronavirus disease 2019 case |
| 5 | 27 March 2020–30 April 2020 | • Home confinement, to for essential products/services |
| 4 | 1 May 2020–31 May 2020 | • Some NEB sectors reopen |
| 3 | 1 June 2020–17 August 2020 | • Interprovincial travel permitted |
| 2 | 18 August 2020–20 September 2020 | • No restrictions on internal movement |
| 1 | 21 September 2020–28 December 2020 | • Minimal restrictions, but with gathering size limitations and social distancing |
| Adjusted 3 | 29 December 2020– 28 Februrary 2021 | • Closure of schools and public amenities |
| Adjusted 1 | 1 March 2021–30 May 2021 | • Alcohol ban during Easter weekend |
| Adjusted 2 | 31 May 2021–15 June 2021 | • NEB must close by 10 PM |
| Adjusted 3 | 16 June 2021–27 June 2021 | • NEB must close by 9 PM |
| Adjusted 4 | 28 June 2021–25 July 2021 | • Alcohol ban |
| Adjusted 3 | 26 July 2021–12 September 2021 | • NEB must close by 9 PM |
| Adjusted 2 | 13 September 2021–26 September 2021 (last week of study) | • Partial reopening of borders |
Abbreviation: NEB, nonessential business.
Figure 1.The stringency of government responses to coronavirus disease 2019 (COVID-19) and mobility metrics for South Africa from March 2020 to September 2021. Vertical dashed lines indicate lockdown alert levels (Table 1) and are colored by the stringency of lockdown measures: dark to light. A, Weekly time series for the national percentage of positive COVID-19 tests (dashed line), the number of COVID-19–coded admissions in South Africa’s primary private hospital group, and the Oxford policy stringency index for South Africa. B, The weekly percent change from baseline for 6 Google mobility categories.
Figure 2.SARS-CoV-2 surveillance and all-cause respiratory encounters in individuals aged ≥5 years. A, The percentage of respiratory samples testing positive for influenza, RSV, and SARS-CoV-2 from 2 syndromic respiratory illness surveillance programs in South Africa. B–D, Weekly all-cause respiratory consultations (including COVID-19) among individuals aged ≥5 years relative to the baseline number of consultations expected in the absence of COVID-19 at 3 levels of clinical severity: inpatient (B), outpatient–emergency department (C), and outpatient–general practitioner (D). The band is the 95% prediction interval of the projected seasonal baseline. The dashed line is the number of COVID-coded encounters. The vertical dashed line indicates the start of the model prediction period (1 March 2020), and panel colors indicate the pre-lockdown period (1 March 2020–26 March 2020) and lockdown alert levels from March 2020 to September 2021 (Table 1). Panels are shaded according to the stringency of lockdown measures: dark to light. The area between the projected seasonal baseline and observed consultations has dark shading when observed consultations are below baseline (“averted cases”) and light shading when observed consultations are above baseline (“excess cases”). See Supplementary Figure 8 for a closer view of the 2020–2021 time period. Abbreviations: COVID-19, coronavirus disease 2019; RSV, respiratory syncytial virus; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
Figure 3.All-cause respiratory admissions in all age groups. A, Weekly all-cause respiratory admissions by age group relative to all-cause respiratory admissions expected in the absence of COVID-19. The band is the 95% prediction interval of the projected seasonal baseline. The dashed line is the number of COVID-coded encounters. The vertical dashed line indicates the start of the model prediction period (1 March 2020), and panel colors indicate the pre-lockdown period (1 March 2020–26 March 2020) and lockdown alert levels from March 2020 to September 2021 (Table 1). Panels are shaded according to the stringency of lockdown measures: dark to light. The area between the projected seasonal baseline and observed consultations has dark shading when observed consultations are below baseline (“averted cases”) and light shading when observed consultations are above baseline (“excess cases”). B, Weekly observed percent difference from seasonal baseline (95% confidence interval) by age group. Abbreviation: COVID-19, coronavirus disease 2019.
Figure 4.Percent change in inpatient admissions for total admissions and non–COVID-19 diagnoses relative to baseline numbers expected in the absence of COVID-19. The average percent change from baseline in weekly admissions during 10 phases of the COVID-19 pandemic in South Africa: pre-lockdown (1 March 2020–26 March 2020) and lockdown alert levels from March 2020 to September 2021 (Table 1). Bars are shaded according to the stringency of lockdown measures: dark to light. The vertical dashed line indicates a 50% reduction relative to the projected baseline number of admissions. See Supplementary Figure 11 for plots of all diagnosis groupings analyzed in the study. Abbreviation: COVID-19, coronavirus disease 2019.
Figure 5.Visits to residential locations are associated with reduced admissions for non- COVID-19 conditions. Relationships between the weekly percent change from baseline in the Google Residential metric and the weekly percent change from baseline in total admissions and non–COVID-19 admissions. Point colors indicate the pre-lockdown period (1 March 2020–26 March 2020) and lockdown alert levels from March 2020 to September 2021 (Table 1). Points are shaded according to the stringency of lockdown measures: dark to light. Generalized additive models (GAMs) were used to identify nonlinear relationships between the Google Residential metric and inpatient admissions for each diagnosis group. GAM adjusted R2 values are in the top right of each facet. See Supplementary Figure 15 for plots of all diagnosis groupings analyzed in the study. Abbreviation: COVID-19, coronavirus disease 2019.