| Literature DB >> 35082508 |
Huike Li1, Yuchen Ma1, Nan Feng2, Wenbo Wang2, Congfen He1.
Abstract
BACKGROUND: Diabetes has become popular and has become one of the most important global health care challenges. Patients with diabetes have a high incidence of skin diseases. Cell and animal models are often used to study the skin conditions of people with diabetes.Entities:
Keywords: UPLC-QTOF-MS; WGCNA; diabetes; skin lipidomics
Year: 2022 PMID: 35082508 PMCID: PMC8785223 DOI: 10.2147/CCID.S347245
Source DB: PubMed Journal: Clin Cosmet Investig Dermatol ISSN: 1178-7015
Clinical Demographics of the Subjects
| Group D | Group H | |
|---|---|---|
| Number | 42 | 35 |
| Age (years) | 60.38 ± 3.044 | 59.69 ± 3.123 |
| Duration (1–10/11–30) | 22/20 | – |
| BMI | 25.88 ± 3.58 | 24.85 ± 2.34 |
| BG (mmol/L) | 10.11 ± 3.90 | 6.89 ± 1.16 |
| HbA1c (%) | 7.69 ± 1.46 | 5.56 ± 0.25 |
| Skin Condition (D/O) | 35/7 | 25/10 |
| Skin Condition (P/NP) | 10/32 | 9/26 |
Notes: Age, BMI, BG and HbA1c are showed as means ± standard deviation, and were assessed by Student’s t-test. Skin condition (D/O) and skin condition (P/NP) were analyzed by the Pearson’ chi-squared test.
Figure 1(A) PLS-DA model of H and D groups (R2Y = 0.914, Q2 = 0.711). (B) A 300-permutation test of the PLS-DA model for H and D groups (R2 = 0.671, Q2 = −0.0299).
AUC > 0.9 Together with VIP > 1, p-values < 0.05 and Fold Change > 2
| m/z | Description | AUC | 95%Cl | Sensitivity (%) | Specificity(%) | p | FC |
|---|---|---|---|---|---|---|---|
| 678.67 | Cer(d18:1/26:0) | 0.943 | 0.890–0.996 | 0.8 | 0.967 | 0 | 9.7 |
| 650.64 | Cer(d18:1/24:0) | 0.936 | 0.878–0.993 | 0.867 | 0.9 | 0 | 7.3 |
| 694.67 | Cer(d18:1/26:0(26OH)) | 0.937 | 0.879–0.994 | 0.8 | 0.933 | 0 | 9.4 |
| 706.71 | Cer(d18:1/28:0) | 0.958 | 0.914–1.002 | 0.867 | 0.933 | 0 | 16.2 |
| 762.77 | Cer(d18:1/32:0) | 0.948 | 0.891–1.005 | 0.933 | 0.9 | 0 | 19.4 |
| 704.69 | Cer(d18:2/28:0) | 0.936 | 0.879–0.992 | 0.867 | 0.867 | 0 | 10.7 |
| 732.72 | Cer(d18:2/30:0) | 0.929 | 0.865–0.994 | 0.9 | 0.833 | 0 | 12.9 |
| 732.65 | Cer(t18:1(6OH)/26:0(2OH)) | 0.907 | 0.832–0.981 | 0.933 | 0.767 | 0 | 10.1 |
| 748.72 | Cer(d18:2/30:0(30OH)) | 0.932 | 0.874–0.990 | 0.833 | 0.9 | 0 | 15.7 |
| 708.72 | Cer(d20:0/26:0) | 0.944 | 0.891–0.998 | 0.8 | 1 | 0 | 6.8 |
| 724.72 | Cer(d20:0/26:0(2OH)) | 0.906 | 0.835–0.976 | 0.767 | 0.867 | 0 | 4.7 |
| 738.73 | Cer(d18:0/29:0(29OH)) | 0.959 | 0.915–1.003 | 0.967 | 0.867 | 0 | 16.3 |
| 752.75 | Cer(d18:0/30:0(30OH)) | 0.935 | 0.871–0.999 | 0.767 | 0.967 | 0 | 10.7 |
| 736.75 | Cer(d18:0/30:0) | 0.954 | 0.900–1.009 | 0.9 | 0.933 | 0 | 18.9 |
| 720.69 | Cer(d18:2/28:0(2OH)) | 0.912 | 0.844–0.980 | 0.867 | 0.8 | 0 | 7.6 |
| 1034.94 | Omega-linoleoyloxy-Cer(d18:1/30:0) | 0.912 | 0.841–0.984 | 0.9 | 0.833 | 0 | 9.7 |
| 994.95 | 1-O-carboceroyl-Cer(d18:1/18:0) | 0.923 | 0.855–0.992 | 0.867 | 0.9 | 0 | 18.6 |
| 1022.98 | 1-O-tricosanoyl-Cer(d18:1/18:0) | 0.911 | 0.838–0.983 | 0.933 | 0.733 | 0 | 12.3 |
| 1026.98 | Omega-linoleoyloxy-Cer(d18:1/31:0) | 0.927 | 0.857–0.996 | 0.933 | 0.833 | 0 | 39.8 |
| 1083.04 | Omega-linoleoyloxy-Cer(d19:1/34:0) | 0.918 | 0.845–0.990 | 0.933 | 0.8 | 0 | 49.7 |
| 1028.96 | Omega-linoleoyloxy-Cer(t18:1(6OH)/30:0) | 0.92 | 0.847–0.993 | 0.8 | 0.967 | 0 | 8.2 |
| 1000.93 | Omega-linoleoyloxy-Cer(t18:1(6OH)/28:0) | 0.904 | 0.831–0.978 | 0.833 | 0.833 | 0 | 7.0 |
| 1038.97 | Omega-linoleoyloxy-Cer(d18:2/32:0) | 0.903 | 0.823–0.983 | 0.9 | 0.8 | 0 | 29.0 |
| 749.42 | 8-oxo-Resolvin D1 | 0.909 | 0.831–0.987 | 0.8 | 0.933 | 0 | 3.9 |
| 980.28 | Cyanidin 3-(6″-sinapylsophoroside)-5-glucoside | 0.919 | 0.847–0.991 | 0.9 | 0.833 | 0 | 4.1 |
| 1156.33 | Cyanidin 3-(6″-ferulyl-2″′-sinapylsophoroside)-5-glucoside | 0.924 | 0.854–0.995 | 0.8 | 0.967 | 0 | 4.3 |
| 933.27 | Isovitexin 2″-O-(6″′-(E)-feruloyl)glucoside 4″-O-glucoside | 0.908 | 0.831–0.984 | 0.867 | 0.867 | 0 | 5.9 |
Figure 2According to the pairwise dissimilarity between lipids, a hierarchical clustering tree is obtained. The dynamic tree cut yielded five modules. The merged dynamic yielded same modules as the dynamic tree cut using a cut-off of 0.3. Module colors are shown correspondingly.
Figure 3Heatmap of module-trait relationships depicting correlations between module eigenlipids and clinical characteristics traits. Numbers in the table correspond to the correlation r and the p-value in parentheses. The degree of correlation is illustrated with the color legend.
Hub Lipids Identified from WGCNA Analysis
| Module-Traits | Lipid ID | Lipid | GS | p-value GS | MM | p-value MM |
|---|---|---|---|---|---|---|
| Turquoise | LMFA01020413 | 11-hydroxy-4-methyl-2E,4E,6E-dodecatrienoic acid | −0.250 | 0.029 | 0.806 | 9.34E-19 |
| HbA1c_H& HbA1c_N | LMGP01010696 | PC(16:1(9Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) | −0.247 | 0.030 | 0.833 | 5.79E-21 |
| Turquoise P & NP | LMFA01030837 | 38:5(23Z,26Z,29Z,32Z,35Z) | 0.275 | 0.016 | 0.813 | 2.87E-19 |
| LMFA01150014 | 13-(3-methyl-5-pentylfuran-2-yl)-tridecanoic acid | 0.264 | 0.020 | 0.863 | 5.81E-24 | |
| LMFA01050152 | Methyl 4-[2-(2-formyl-vinyl)-3-hydroxy-5-oxo-cyclopentyl]-butanoate | 0.252 | 0.027 | 0.908 | 3.91E-30 | |
| LMFA01040038 | Methyl-10-hydroperoxy-8E,12Z,15Z-octadecatrienoate | 0.248 | 0.030 | 0.979 | 3.29E-53 | |
| LMFA06000087 | 6,8,10,12-pentadecatetraenal | 0.245 | 0.032 | 0.916 | 2.05E-31 | |
| LMFA05000218 | 3,7,11,15,19-Pentamethyleicosa-2E,6E,10E,14E,18-pentaen-1-ol | 0.243 | 0.033 | 0.954 | 4.17E-41 | |
| LMFA07070046 | 4,8 dimethylnonanoyl carnitine | 0.240 | 0.036 | 0.973 | 1.60E-49 | |
| LMGP01050142 | PC(22:5(4Z,7Z,10Z,13Z,16Z)/0:0) | 0.238 | 0.037 | 0.802 | 1.81E-18 | |
| LMGP04030015 | PG(P-16:0/18:4(6Z,9Z,12Z,15Z)) | 0.236 | 0.038 | 0.969 | 1.65E-47 | |
| LMPR04000022 | 32,35-anhydrobacteriohopaneterol | 0.233 | 0.041 | 0.966 | 9.25E-46 | |
| LMGL03016882 | 1,2,3-(8R,9R-epoxy-17E-octadecen-4,6-diynoyl)-sn-glycerol | 0.225 | 0.049 | 0.977 | 2.75E-52 | |
| Brown P & NP | LMFA01050164 | 2-hydroxy-10-undecenoic acid | 0.232 | 0.042 | 0.871 | 7.36E-25 |
Figure 4The difference in relative content of ceramide subclasses between group D and group H. [SP0201]: ceramides, [SP0202]: dihydroceramides, [SP0204]: acyl-ceramides. (***p<0.01)
Figure 5KEGG pathway analysis of hub lipids screened by WGCNA.