Ayesha Ashraf1, John M Herbert1, Shabbir Muhammad2, Bilal Ahmad Farooqi3, Umar Farooq3, Muhammad Salman3, Khurshid Ayub4. 1. Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA. 2. Department of Physics, College of Science, King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia. 3. Institute of Chemistry, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590 Pakistan. 4. Department of Chemistry, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan.
Abstract
Composite formation with graphene is an effective approach to increase the sensitivity of polythiophene (nPT) gas sensors. The interaction mechanism between gaseous analytes and graphene/nPT composite systems is still not clear, and density functional theory calculations are used to explore the interaction mechanism between graphene/nPT nanoribbon composites (with n = 3-9 thiophene units) and gaseous analytes CO, NH3, SO2, and NO2. For the studied analytes, the interaction energy ranges from -44.28 kcal/mol for (C54H30-3PT)-NO2 to -2.37 kcal/mol for (C54H30-3PT)-CO at the counterpoise-corrected ωB97M-V/def2-TZVPD level of theory. The sensing mechanism is further evaluated by geometric analysis, ultraviolet-visible spectroscopy, density of-states analysis, calculation of global reactivity indices, and both frontier and natural bond orbital analyses. The variation in the highest occupied molecular orbital/lowest unoccupied molecular orbital gap of the composite indicates the change in conductivity upon complexation with the analyte. Energy decomposition analysis reveals that dispersion and charge transfer make the largest contributions to the interaction energy. The graphene/oligothiophene composite is more sensitive toward these analytes than either component taken alone due to larger changes in the orbital gap. The computational framework established in the present work can be used to evaluate and design graphene/nPT nanoribbon composite materials for gas sensors.
Composite formation with graphene is an effective approach to increase the sensitivity of polythiophene (nPT) gas sensors. The interaction mechanism between gaseous analytes and graphene/nPT composite systems is still not clear, and density functional theory calculations are used to explore the interaction mechanism between graphene/nPT nanoribbon composites (with n = 3-9 thiophene units) and gaseous analytes CO, NH3, SO2, and NO2. For the studied analytes, the interaction energy ranges from -44.28 kcal/mol for (C54H30-3PT)-NO2 to -2.37 kcal/mol for (C54H30-3PT)-CO at the counterpoise-corrected ωB97M-V/def2-TZVPD level of theory. The sensing mechanism is further evaluated by geometric analysis, ultraviolet-visible spectroscopy, density of-states analysis, calculation of global reactivity indices, and both frontier and natural bond orbital analyses. The variation in the highest occupied molecular orbital/lowest unoccupied molecular orbital gap of the composite indicates the change in conductivity upon complexation with the analyte. Energy decomposition analysis reveals that dispersion and charge transfer make the largest contributions to the interaction energy. The graphene/oligothiophene composite is more sensitive toward these analytes than either component taken alone due to larger changes in the orbital gap. The computational framework established in the present work can be used to evaluate and design graphene/nPT nanoribbon composite materials for gas sensors.
Electronic devices
which consist of sensing materials are generally
regarded as chemical sensors. These chemical sensors interact with
an analyte and transduce this interaction into an electrical or optical
signal. The sensitivity, selectivity, and rapid detection of targeted
molecules are the key factors in the design of advanced chemical sensors.[1] Conducting organic polymers, including polyaniline,[2,3] polypyrrole,[4,5,80] polyacetylene,
and polythiophene,[6,7] are considered promising materials
in the fabrication of smart materials due to their favorable electronic,
optical, and magnetic properties and ease of functionalization. Among
these materials, polythiophene is considered especially auspicious
due to its low cost, better electrical conductivity, high environmental
stability, and easy processing for applications in photovoltaics,
electronics, electrocatalysis, sensors, and actuators.[8] Conducting polymers interact with various gases through
electrochemical or acid–base interactions.[9−11] A polythiophene
matrix is introduced with various nanofillers such as metals or metal
oxides to enhance the electrical conductivity and thermomechanical
properties.[12,13]The development of polymer
composites based on carbon fillers such
as carbon nanotubes (CNTs) and graphene (GR) has gained much attention.[14] These polymer composites provide a path to obtaining
new sensor materials with better mechanical stability and functional
properties than pure components. The high electrical conductivity
and large surface area are remarkable features of these carbon allotropes,
which are useful for the design of a chemical sensor that responds
to electrical or chemical perturbations.[15] Two-dimensional graphene has potential as a gas-sensing material
owing to the high surface area to volume ratio.[16] The electronic properties of graphene are altered on gas
adsorption, which enables graphene to detect gases such as NH3,[17−19] SO2,[20] H2,[9] and NO2[21] with high precision. Graphene-based gas sensors
have been extensively used due to their high carrier mobility, mechanical
strength, and astounding optical and electronic properties. Graphene
with one atom-thick layer has a significant role in sensing several
gases such as NH3, NO2, H2O, and
CO with a detection limit of 1 ppb.[22] Hybrid
materials of graphene can be used to design and regulate the sensing
performance. The processes included may be the catalytic reaction
with analyte, charge transfer, charge carrier transport, and manipulation
of heterojunctions and their combinations.[23]The theoretical studies indicate that the adsorption of different
gases on graphene introduces inconsistent doping states.[24,25] The blending of pure graphene with other functional materials increases
the sensitivity of graphene toward gas molecules due to the symbiotic
effects of various components. Carbon–polymer composite-based
chemiresistors possess great stability, improved lifetime, tunable
selectivity, reversibility, and reproducibility.[26] Semiconductors,[27] carbon materials,[28] and organic/inorganic composites[29,30] are all used as sensing materials, but they function based on different
mechanisms and principles. The conductive carbon particles in these
systems allow the passage of current through continuous pathways between
the parallel electrodes of the transducer. The polymer film swells
up upon sorption of chemical vapor and some of the continuous pathways
are interrupted, which increases the resistance of the composite.
Therefore, solvation parameters are considered key to designing polymer-based
sensors that are selective to various classes of volatile organic
components.[31]In situ chemical polymerization[32] and plasma
methods[14] are used
to synthesize graphene/polythiophene composites. The functionalized
polythiophene/graphene nanostructures are synthesized to study the
variation in their optoelectronic properties.[33] Poly(methyl methacrylate) chemically blended with graphene enhances
carrier scattering properties and serves as an adsorbent layer to
concentrate gas molecules on the surface of graphene.[34] The synthesis of polythiophene/graphene oxide (PT/GrO)
composites by interfacial polymerization is achieved to evaluate their
electrical and electrochemical properties.[8] The graphene/polythiophene composites with different mass proportions
are synthesized for their use as supercapacitor electrodes.[35] The theoretical insights of graphene/polythiophene
composites with various sheet and ribbon models of graphene and different
proportions of oligothiophene (nPT) in these composites
are obtained to study the variation in the optical band gap.[36] The molecular-level dispersion of graphene is
related to the efficiency of GR-conducting polymer composites that
protects the intrinsic electronic properties of graphene and permits
the homogeneous distribution of nanofillers by an appropriate selection
of the polymer matrix through π–π stacking or van
der Waals interactions.[1] Stacking interactions
play an important role in controlling the structure and molecular
recognition. Therefore, dispersion forces are important for their
interaction with aromatic, polycyclic, and planar ligands. The interaction
of molecules with other molecules or particle changes the electronic
structure as well as the charge distribution.[37] The other type of interactions is CH···π and
lone-pair···π interactions that play a significant
role in structural manifestation. The lone-pair···π
interactions are mostly repulsive, that is, between non-bonding electrons
and π electrons. The binding energies for these interactions
lie in the range of ∼1–2 kcal/mol.[38] The oxidative or reductive gas molecules adsorbed on the
surface of the graphene–polymer composite persuades the doping
or de-doping of the polymer component, which results in the change
in conductance of the composite.All these eye-catching properties
of polymeric-GR based materials
make them perfect candidates for replacing the ordinary heavy sensing
equipment with high-tech highly sensitive next-generation gas sensor
materials.[39,40] Polythiophene thin films, derivatives,
microstructures, and nanofibers have been explored experimentally
as sensors for gases and oxidizing vapors including H2S,
NH3,[6,41] CH3OH, C2H5OH,[6,42] NO2, Cl2, SO2,[43,44] and volatile organic compounds.[45] The hybridization of polythiophene with graphene
provides many advantages in the gas-sensing performance. There are
few reports about the use of hybrids of graphene, polythiophene, or
its derivatives for gas detection. The hybrid of reduced graphene
oxide and poly(3,4-ethylenedioxythiophene) is used for the sensing
of NO2 at room temperature.[46,47] Self-assembled
functionalized polythiophene and graphene are used for the sensing
of toxic ions, nitroaromatics, and surfactants.[33]Herein, we examine a graphene–polythiophene
nanoribbon model
(C54H30-nPT) as a potential
sensing material for gaseous analytes such as CO, NH3,
SO2, and NO2. The presence of these gases in
ambient environments is hazardous, even at ppm and ppb concentrations.
Therefore, their detection is important but as of yet there is no
theoretical insight in the literature regarding the adsorption of
gases on graphene–polythiophene composite surfaces. The present
study aims to explain the sensing mechanism of gases over composite
surfaces by examining the geometrical structures of C54H30-nPT before and after interaction
with the aforementioned gas molecules. Estimation of interaction energies,
frontier molecular orbital analysis, energy decomposition analysis,
natural bond orbital (NBO) analysis of charge transfer, noncovalent
interaction (NCI) analysis, and UV–vis spectroscopic analysis
are performed to check the selectivity and sensitivity of sensors.
Results
and Discussion
Geometrical Parameters
Geometry
optimization is important
to ascertain the most stable structure. The geometries of different
graphene sheets (C30H14, C46H18, and C59H20) and ribbons (C38H22, C46H26, and C54H30), in composites with nPTs (n = 1–13) are examined in vertical, tilted, and π-stacking
orientations. Stable composites are obtained in the π-stacked
configuration as the size of the graphene model increases, see Figure for an example.
The ribbon models of graphene/nPT composites gave
large interaction energies and stable complexes.[36] As such, we selected a C54H30-nPT graphene ribbon/nPT model for sensing
gaseous analytes. Geometries of graphene–polythiophene nanoribbon
composites, C54H30-nPT (n = 3, 5, 7, 9), were optimized both in isolation, and in
complexes with CO, NH3, SO2, and NO2 analytes. In the composite complexes, the analyte-to-composite distance,
interlayer distance (between the nPT and the graphene
ribbon), bond angle, and dihedral angle are important parameters that
characterize the interaction between the composite and analyte. The
analyte-to-composite distance characterizes the interaction of the
graphene-nPT composite with the analyte, while the
bond and dihedral angles indicate whether the composite is planar
upon complexation.
Figure 1
Reference geometry for the numbering scheme: C54H30···3PT···X (X = CO, NH3, SO2, NO2).
Reference geometry for the numbering scheme: C54H30···3PT···X (X = CO, NH3, SO2, NO2).The length of the nPT varies in these composites
while the size of graphene ribbon remains the same. Analytes are oriented
on the surface of the composite from the nPT side,
in order to study the change in the geometry and interaction behavior.
The geometries of nanoribbon composites (C54H30-nPT) with analytes (CO, NH3, SO2 and NO2) are optimized. The optimized geometrical
parameters are given in Table . The numbering scheme for the C54H30-3PT-X is shown in Figure for X = CO.
Table 1
Optimized Geometric
Parameters of
C54H30···nPT···X
Composite–Analyte Complexes, for n = 3, 5,
7, and 9 Thiophene Units and for Analytes X = CO, NH3,
SO2, and NO2a
system
d(S11-X108a) Å
∠C14S11Xa (degrees)
∠S11C9C1S5 (degrees)
C54H30···3PT
163
C54H30···3PT···CO
3.57
63
165
C54H30···3PT···NH3
3.60
71
165
C54H30···3PT···SO2
3.55
84
166
C54H30···3PT···NO2
3.53
68
170
C54H30···5PT
165
C54H30···5PT···CO
3.47
71
163
C54H30···5PT···NH3
3.63
80
163
C54H30···5PT···SO2
3.55
83
166
C54H30···5PT···NO2
3.53
69
170
C54H30···7PT
169
C54H30···7PT···CO
3.55
64
168
C54H30···7PT···NH3
3.62
70
168
C54H30···7PT···SO2
3.56
88
170
C54H30···7PT···NO2
3.42
62
173
C54H30···9PT
172
C54H30···9PT···CO
3.54
66
170
C54H30···9PT···NH3
3.62
71
171
C54H30···9PT···SO2
3.56
89
170
C54H30···9PT···NO2
3.52
69
173
Computed at the M06-2X/6-31G** level
of theory.
Computed at the M06-2X/6-31G** level
of theory.
C54H30-nPT-CO
Geometry of isolated composites
changes after interactions with carbon
monoxide. Different orientations of CO molecules are considered on
the composite surface in recognition of the fact that CO may adopt
either a carbene-like (:C=Ö) or a dipolar (−C≡O+) resonance structure. The stable geometry
is found to consist of a parallel orientation of CO on the composite
surface, where both oxygen and carbon interact with nPT. The optimized geometry of C54H30-3PT-CO
is depicted in Figure and other less stable geometries are given in Figures S2 and S3.
Figure 2
Optimized geometries of (a) C54H30···3PT···CO,
(b) C54H30···3PT···NH3, (c) C54H30···3PT···SO2, and (d) C54H30···3PT···NO2 composite–analyte complexes.
Optimized geometries of (a) C54H30···3PT···CO,
(b) C54H30···3PT···NH3, (c) C54H30···3PT···SO2, and (d) C54H30···3PT···NO2 composite–analyte complexes.The intermolecular bond distance dS11-C108 in C54H30-3PT-CO is 3.57 Å and dS11-O109 is 3.48 Å, whereas the
interlayer distance between nPT and graphene ribbon
is 3.63 Å. The interlayer distance in the larger nPT composite C54H30-5PT-CO increases to 3.96
Å as the graphene ribbon bends at the center. The bond distance dS11-C108 decreases to 3.47 Å and dS11-O109 increases to 3.58 Å. This
decrease in the dS11-C108 bond
distance indicates a favorable interaction between S and C than S
and O as the dS11-O109 bond distance increases.
In the C54H30-7PT-CO complex, the dS11-C108 bond distance increases to 3.55 Å,
whereas the interlayer and dS11-O109 distances decrease to 3.86 and 3.52 Å, respectively. This decrease
in the interlayer distance results as nPT (7PT) becomes
parallel to the graphene ribbon, but the increase in the dS11-C108 distance indicates a decrease in the interaction
between CO and higher nPT composites. The interlayer
distance in C54H30-9PT-CO is slightly smaller
still, at 3.83 Å, due to the bending of the nPT with the graphene ribbon at the center. The dS11-C108 intermolecular distance slightly decreases
to 3.54 Å, whereas the dS11-O109 bond distance remains the same at 3.52 Å. These changes indicate
the variation in the interaction strength among graphene-nPT composites and CO. The variations in the interlayer distance between
the C54H30 ribbon and nPT indicate
the strength of π-stacking interactions.The impact of
the intermolecular angle ∠C14S11X (X
= C108, O109) on the overall complex
formation has also been examined. The ∠C14S11C108 and ∠C14S11O109 bond angles in C54H30-3PT-CO are
63 and 78°, respectively. These ∠C14S11C108 and ∠C14S11O109 angles increase to 71 and 87° in C54H30-5PT-CO, respectively. The bond angle increases to minimize repulsion
between bonding electrons. In C54H30-7PT-CO,
the ∠C14S11C108 and ∠C14S11O109 angles decrease to 64 and 78°,
respectively. The nPT becomes parallel over the graphene
ribbon in all other complexes, so a decrease in bond angles is observed
as the bond distance also increases in this complex. The ∠C14S11C108 and ∠C14S11O109 angles in the C54H30-9PT-CO complex are 66 and 80°, respectively. This increase
in the angle is again due to changes in the geometry of the composite
as both nPT and graphene ribbon bend at the center,
and this change is in accordance with the bond distance. Another geometrical
parameter is the dihedral angle that is influential in the planarity
of the composites after complexation (i.e., conductivity change).
The dihedral angle between two planes is the measure of coplanarity,
and the ∠S11C9C1S5 dihedral angle varies after interaction with the analyte.
It is 163° in the C54H30-3PT composite
and increases to 165° after complexation with CO. The increase
in the dihedral angle signifies a decrease in coplanarity. In C54H30-5PT, the dihedral angle is 165° and decreases
to 163° in C54H30-5PT-CO. Similarly, the
dihedral angle in C54H30-7PT is 169° and
slightly decreases to 168° in C54H30-7PT-CO.
The dihedral angle of C54H30-9PT composite decreases
from 172 to 170° after complexation with CO in the C54H30-9PT-CO complex. This decrease in the dihedral angle
increases the coplanarity. The overall variation in geometrical parameters
is due to changes in the geometry of composites when nPT becomes bent and parallel over the graphene ribbon.
C54H30-nPT-NH3
The optimized
geometrical parameters of C54H30-nPT composite change upon complexation
with NH3 (Table ). The optimized geometry of C54H30-3PT-NH3 is given in Figure and other less stable structures are given in Figures S2 and S3. The analyte-to-composite distance
(dS11-N108) in the C54H30-3PT–NH3 complex is 3.60 Å and the interlayer distance is 3.63
Å. The dS11-N108 intermolecular
distance increases to 3.64 Å in C54H30-5PT-NH3 and the interlayer distance increases to 3.96 Å due
to the bending of the graphene ribbon at the center. The increase
in the intermolecular distance indicates a decrease in interaction
strength between NH3 and the composite. The dS11-N108 distance in the larger C54H30-7PT-NH3 complex slightly decreases to 3.62 Å
and remains the same in the C54H30-9PT-NH3 complex. The interlayer distance decreases to 3.86 Å
in C54H30-7PT-NH3 as nPT becomes parallel to the graphene surface. This distance further
decreases to 3.83 Å in the C54H30-9PT-NH3 complex due to the bending of nPT and graphene
ribbon at the center. The ∠C14S11N108 bond angle in the C54H30-3PT-NH3 complex is 71° and increases to 80° in the C54H30-5PT-NH3 complex. The graphene ribbon
is bent at the center and the central thiophene ring of the 5PT becomes
slightly flat over the graphene ribbon and the interacting angle varies.
In the C54H30-7PT–NH3 complex,
the angle decreases to 70° and then slightly increases to 71°
in the C54H30-9PT–NH3 complex.
This variation is due to changes in the geometry of the composite,
which is parallel in C54H30-7PT-NH3 and then bent slightly at the center in the C54H30-9PT-NH3 complex. The bond angle varies as the
bond distance changes. The ∠S11C9C1S5 dihedral angle of the C54H30-3PT composite is 163° and increases to 165° after complexation
with NH3 in C54H30-3PT-NH3. The increase in the dihedral angle decreases the coplanarity. In
C54H30-5PT, the dihedral angle is 165°
and decreases to 163° in C54H30-5PT- NH3. The dihedral angle in C54H30-7PT is
169° and slightly decreases to 168° after complexation with
NH3 in C54H30-7PT- NH3. The decrease in the dihedral angle (∠S11C9C1S5) increase the coplanarity. The
dihedral angle of the C54H30-9PT composite is
172° and in the C54H30-9PT-NH3 complex, it decreases to 171°.
C54H30-nPT-SO2
The optimized geometry
of C54H30-3PT-SO2 is depicted in Figure , whereas other less
stable geometries are shown in Figures S2 and S3. The impact of geometrical
parameters for these composite–analyte systems is also elucidated
and listed in Table . The analyte-to-composite distance (dS11-S108)
in the C54H30-3PT-SO2 complex is
3.55 Å and remains the same in the C54H30-5PT-SO2 complex. The interlayer distances in C54H30-3PT-SO2 and C54H30-5PT-SO2 complexes are 3.63 Å and 3.96 Å, respectively.
The intermolecular distance (dS11-S108) slightly
increases to 3.56 Å in C54H30-7PT-SO2 and does not change in the C54H30-9PT-SO2 complex. SO2 is oriented on the composite surface
in a bent or V shape and its distance does not change much as the
size of nPT increases in the composite. The interlayer
distance decreases to 3.86 Å in C54H30-7PT-SO2 and 3.83 Å in C54H30-9PT-SO2 complexes in which 7PT is parallel over the graphene ribbon
and 9PT becomes slightly bent at the center, respectively. The change
in intermolecular angle ∠C14S11S108 in all C54H30-nPT-SO2 complexes is comparatively greater than all other composite/analyte
complexes. The SO2 is V-shaped and the sulfur atom of SO2 is slightly displaced away from the interacting sulfur of
the nPT. The intermolecular angle (∠C14S11S108) in the C54H30-3PT-SO2 complex is 84°, and it slightly
decreases to 83° in the C54H30-5PT-SO2 complex. This is a negligible variation in the intermolecular
angle as the bond distances in C54H30-3PT-SO2 and C54H30-5PT-SO2 remain
the same. Then, a slight increase of 88° is observed in C54H30-7PT-SO2, which further increases
to 89° in the C54H30-9PT-SO2 complex. This increase is due to a change in the position of nPT in these composites. This change in intermolecular angle
results in a decrease in the interaction between SO2 and
higher graphene-nPT composites. The variation in
the dihedral angle (∠S11C9C1S5) also shows the same trend as the intermolecular angle.
The ∠S11C9C1S5 dihedral angle of the C54H30-3PT composite is 163°, and it increases to 166°
after interaction with SO2 in C54H30-3PT-SO2. In C54H30-5PT, the dihedral
angle is 165° and increases to 166° in C54H30-5PT-SO2. This increase in the dihedral angle
decreases the coplanarity. The C54H30-5PT-SO2 complex shows an increase in the dihedral angle than C54H30-5PT-CO and C54H30-5PT-NH3, which is due to the V-shape geometry of SO2 and
the strength of interaction. The dihedral angle in C54H30-7PT is 169° and slightly increases to 170° in
C54H30-7PT-SO2. This slight increase
is due to the planarity of nPT (7PT) over the graphene
ribbon. ∠S11C9 C1 S5 increases the coplanarity. The dihedral angle (∠S11C9 C1 S5) of the C54H30-9PT composite is 172° and in the C54H30-9PT-SO2 complex, it decreases to 170° and
coplanarity increases slightly which increases conjugation.
C54H30-nPT-NO2
The optimized geometry of C54H30-3PT-NO2 is shown in Figure and other less stable geometries are given in Figures S2 and S3. The results of computed geometrical
parameters of these composite–analyte systems are listed in Table . The analyte-to-composite
distance (dS11-N110) in the C54H30-3PT-NO2 complex is 3.53 Å
and remains invariable in the C54H30-5PT-NO2 complex. The nPT become planar over the
graphene ribbon (Figures and S2). The interlayer distance
in C54H30-3PT-NO2 is 3.81 Å,
and it slightly increases to 3.82 Å in C54H30-5PT-NO2, which is due to the sliding of nPT over the graphene ribbon. The intermolecular distance (dS11-N110) decreases to 3.42 Å in
C54H30-7PT-NO2 as NO2 becomes
parallel and slightly moves ahead to interfacing sulfur of nPT than the orientation of NO2 in other composites
(Figure S3). The nPT also
becomes parallel to the graphene ribbon in this composite system and
the interlayer distance decreases to 3.73 Å. The (dS11-N110) intermolecular distance then increases
to 3.52 Å, which indicates the decrease in interactions between
NO2 and C54H30-9PT composite. The
interlayer distance is 3.73 Å. The intermolecular angle (∠C14S11N110) in C54H30-3PT-NO2 is 68° and slightly increases to 69°
in the C54H30-5PT-NO2 complex. The
intermolecular angle decreases to 62° in C54H30-7PT-NO2 and then increases to 69° in the
C54H30-9PT-NO2 complex. This change
in the intermolecular angle causes either an increase or decrease
in the interaction between the NO2 and the composites.
The ∠S11C9C1S5 dihedral
angle of the C54H30-3PT composite is 163°
and it increases to 170° after complexation with NO2 in C54H30-3PT- NO2. In C54H30-5PT, the dihedral angle is 165° and increases
to 170° in C54H30-5PT- NO2.
The dihedral angle in C54H30-7PT is 169°
and further increases to 173° after complexation with NO2 in C54H30-7PT-NO2. In C54H30-nPT-NO2 complexes,
the continuous increase is observed in the dihedral angle than all
other complexes, which decreases the coplanarity. The anomalous behavior
of NO2 with the composite is due to its difference in polarity
relative to the other analytes. The dihedral angle of the C54H30-9PT composite is 172° and in the C54H30-9PT-NO2 complex, it increases to 173°.Based on geometric parameters (intermolecular distances and angles)
of all these complexes, it is clear that NO2 shows the
maximum change, indicating that it has the strongest interaction with
the composites among the analytes considered here.
Interaction
Energies
The strength of the interaction
between the composites C54H30-nPT (n = 3, 5, 7, and 9) and selected analytes (CO,
NH3, SO2, and NO2) is studied at
the ωB97M-V/def2-TZVPD level of theory. Interaction energies
are provided in Table . The interaction energies of noncovalent complexes are generally
overestimated because of the basis set superposition error (BSSE),
which can be mitigated by counterpoise (CP) correction,[48] and results both with and without the CP correction
are reported in Table .
Table 2
Interaction Energies of C54H30···nPT···X
Composite–Analyte Complexes (for X = CO, NH3, SO2, and NO2)a
Eint (kcal/mol)
system
no CP
with CP
C54H30···3PT···CO
–2.8
–2.4
C54H30···3PT···NH3
–3.3
–2.6
C54H30···3PT···SO2
–16.7
–15.7
C54H30···3PT···NO2
–45.0
–44.3
C54H30···5PT···CO
–2.3
–2.2
C54H30···5PT···NH3
–3.0
–2.4
C54H30···5PT···SO2
–5.5
–4.4
C54H30···5PT···NO2
–33.1
–32.8
C54H30···7PT···CO
–2.3
–1.8
C54H30···7PT···NH3
–2.9
–2.1
C54H30···7PT···SO2
–5.1
–3.8
C54H30···7PT···NO2
–14.8
–14.1
C54H30···9PT···CO
–2.2
–1.8
C54H30···9PT···NH3
–2.7
–2.2
C54H30···9PT···SO2
–2.1
–1.1
C54H30···9PT···NO2
–3.9
–3.4
Computed at the ωB97M-V/def2-TZVPD
level of theory.
Computed at the ωB97M-V/def2-TZVPD
level of theory.At the
ωB97M-V/def2-TZVPD level of theory, the CP corrections
are quite modest, no more than 1.3 kcal/mol but usually much less,
and in the discussion that follows we will quote the CP-corrected
results. In contrast, interaction energies computed at the M06-2X-D3/6-31G(d,p)
level of theory (not shown) exhibit considerable variation when the
CP correction is applied and are therefore not considered further
in the present work.The interaction energy of C54H30-3PT-CO at
the ωB97M-V/def2-TZVPD level is −2.8 kcal/mol (or −2.4
kcal/mol upon CP correction) and decreases to −2.3 kcal/mol
(−2.2 kcal/mol with CP correction) in the C54H30-5PT-CO complex. The NCIs between a π system and a
polar molecule leads to polar-π interactions,[49,50] and the strength of these interactions decreases upon increasing
the length of the nPT constituent as the delocalization
of π the electrons reduces the charge density available to CO
for polar-π interaction. CO is a polar molecule and oriented
over the composite so as to interact with the π electrons of
the composite. The interaction energy of the C54H30-7PT-CO complex is −2.3 kcal/mol (−1.8 kcal/mol with
CP) and it decreases to −2.2 kcal/mol (−1.8 kcal/mol
with CP) in C54H30-9PT-CO. The interaction energies
decrease as conjugation in the π system and the length of nPT chain increase, for the reasons described above.Ammonia is a trigonal pyramidal asymmetric polar molecule.
The noncovalent polar-π interaction energies of the C54H30-nPT-NH3 complexes are
listed in Table .
The interaction energy of the C54H30-3PT-NH3 complex is −3.3 kcal/mol (−2.6 kcal/mol with
CP). This energy is greater than the C54H30-3PT-CO
complex (−2.8 kcal/mol) because NH3 is more polar
than CO. The interaction energies decrease to −3.0 kcal/mol
(−2.4 kcal/mol with CP) and −2.9 kcal/mol (−2.1
kcal/mol with CP) in the C54H30-5PT-NH3 and C54H30-7PT-NH3 complexes, respectively.
The interaction energy further decreases to −2.7 kcal/mol (−2.2
kcal/mol with CP) in the C54H30-9PT-NH3 complex. The strength of the polar-π NCI decreases with increasing
delocalization of the π electrons because less charge is available
to NH3 in complexes with larger oligomers.SO2 exhibits a larger interaction energy with
C54H30-nPT composites as compared
to CO or NH3. SO2 is a bent V-shaped molecule
and therefore polar, with oxygen withdrawing electron density from
sulfur and polarizing the S–O bond. Polar-π interactions
are generated between the electropositive sulfur and the conjugated
π system. The interaction energies of C54H30-nPT-SO2 complexes are given in Table . The interaction
energy of C54H30-3PT-SO2 is −16.7
kcal/mol (−15.7 kcal/mol with CP). The interaction energy decreases
to −5.5 kcal/mol (−4.4 kcal/mol with CP) and −5.1
kcal/mol (−3.8 kcal/mol with CP) in the C54H30-5PT-SO2 and C54H30-7PT-SO2 complexes, respectively. This sharp decrease in the interaction
energy from −16.7 kcal/mol (C54H30-3PT-SO2) to −5.1 kcal/mol (C54H30-7PT-SO2) is due to the decreasing strength of polar-π interactions
and an increase in π–π interactions with an increase
in size of nPT. As compared to larger composites,
in C54H30-3PT-SO2 there is not much
delocalization of π electrons within the conjugated system because
of the smaller size of nPT. As a result, the π
electrons are easily available to the electropositive sulfur in C54H30-3PT-SO2 and the interaction energy
is much larger. In C54H30-9PT-SO2, the interaction energy further decreases to −2.1 kcal/mol
(−1.1 kcal/mol with CP).The interaction energy
of C54H30-3PT-NO2 is −45.0
kcal/mol (−44.3 kcal/mol with CP).
This value is much greater that the corresponding values for another
analytes (CO, NH3, or SO2). In NO2, nitrogen is surrounded by two electronegative oxygens and it is
also smaller in size than oxygen. The withdrawing effect of electronegative
oxygen creates more positive charge density on the nitrogen atom leading
to favorable interactions with the π electrons, resulting in
a strong polar-π interaction. The interaction energy decreases
to −33.1 kcal/mol (−32.8 kcal/mol with CP) in the C54H30-5PT–NO2 complex and further
decreases to −14.8 kcal/mol (−14.1 kcal/mol with CP)
and −3.9 kcal/mol (−3.4 kcal/mol with CP) in C54H30-7PT-NO2 and C54H30-9PT-NO2, respectively. As with other systems considered
above, increasing delocalization of the π electrons with increasing
polymer length reduces the strength of the analyte–composite
polar-π interaction. In combination with the survey of the optimized
geometrical parameters, these interaction energies make clear that
NO2 exhibits the strongest interaction with the composite.
Natural Bond Orbital Analysis
Charge transfer may play
a significant role in electronic properties and changes in molecular
charge upon complexation may help to account for the sensing ability
of the composite substrate toward analytes. Here, the amount of charge
transfer between the graphene-nPT composite and the
analyte is investigated using the natural atomic charges that come
from NBO analysis, as listed in Table .
Table 3
Natural Population Analysis of Composite–Analyte
Complexes C54H30···nPT···X (n = 3, 5, 7, and 9; X = CO,
NH3, SO2, and NO2)
amount
of charge transfer
system
nPT
graphene
analyte
C54H30···3PT
+0.027
–0.027
C54H30···3PT···CO
+0.030
–0.025
–0.005
C54H30···3PT···NH3
+0.023
–0.022
–0.001
C54H30···3PT ···SO2
+0.057
–0.018
–0.039
C54H30···3PT···NO2
+0.066
+0.244
–0.310
C54H30···5PT
+0.058
–0.058
C54H30···5PT···CO
+0.060
–0.058
–0.002
C54H30···5PT···NH3
+0.056
–0.055
–0.001
C54H30···5PT···SO2
+0.092
–0.054
–0.038
C54H30···5PT···NO2
+0.083
+0.249
–0.333
C54H30···7PT
+0.071
–0.071
C54H30···7PT···CO
+0.075
–0.070
–0.005
C54H30···7PT···NH3
+0.069
–0.068
–0.001
C54H30···7PT···SO2
+0.086
–0.047
–0.038
C54H30···7PT···NO2
+0.085
+0.241
–0.326
C54H30···9PT
+0.064
–0.064
C54H30···9PT···CO
+0.068
–0.063
–0.005
C54H30···9PT···NH3
+0.316
–0.315
–0.001
C54H30···9PT···SO2
+0.110
–0.070
–0.039
C54H30···9PT···NO2
+0.087
+0.326
–0.324
Overall, we find that complexation transfer a small negative charge
to the analyte. The amount of charge transferred is quite small (no
more than 0.005e) when the analyte is CO or NH3 and does not change appreciably with the size of the nPT oligomer, in contrast to the interaction energies that
do depend on size. The transferred charge is larger in the case of
SO2, which develops a charge of −0.039e upon complexation. This increase, relative to CO or NH3, can be ascribed to resonance structures in SO2 that
allow it to accommodate more charge. Finally, the amount of charge
transferred to the analyte is most significant in the case of NO2, where it exceeds −0.3e. This is
consistent with the much stronger interactions of NO2 with
the composites, as compared to other analytes.
Frontier Molecular Orbital
Analysis
We next analyze
the interaction of the composites with the analytes in terms of their
effect on the HOMO–LUMO (H–L) gap. These frontier orbital
energies are listed in Table , whereas the orbitals themselves are plotted in Figures and S4–S6. The change in HOMO and LUMO energies
due to the overlapping of frontier molecular orbitals upon complexation
dictates changes in conductivity of the system.[51−53] Changes in
the H–L gap of the composite upon complexation with an analyte
can be expected due to changes induced in the torsional angles of
the composite, leading to increased twisting of the conjugated system
and therefore a larger H–L gap in the presence of an analyte.[54,55] The increase in the H–L gap of the composite after sensing
increases its resistance which lowers its conductivity.
Table 4
H–L Gaps, λmax, Oscillator
Strengths, and Excitation Energies of C54H30···nPT···X
Composite–Analyte Complexes (n = 3, 5, 7,
and 9; X = CO, NH3, SO2, and NO2)a
system
H–L gap
(eV)
λmax (nm)
oscillator strength
excitation energy (eV)
HOMO (eV)
LUMO (eV)
C54H30···3PT
0.63
590
3.61
2.10
–3.85
–3.22
C54H30···3PT ···CO
0.65
603
5.23
2.06
–3.88
–3.23
C54H30···3PT ···NH3
0.65
595
2.88
2.08
–3.92
–3.27
C54H30···3PT ···SO2
0.63
604
5.11
2.05
–3.92
–3.29
C54H30···3PT ···NO2
0.86
808
2.47
1.53
–4.07
–3.21
C54H30···5PT
0.59
652
1.81
1.90
–3.78
–3.19
C54H30···5PT ···CO
0.60
656
1.81
1.89
–3.79
–3.19
C54H30···5PT ···NH3
0.58
651
2.11
1.90
–3.82
–3.24
C54H30···5PT ···SO2
0.59
651
1.93
1.90
–3.82
–3.23
C54H30···5PT ···NO2
0.65
845
1.51
1.47
–4.02
–3.37
C54H30···7PT
0.58
664
1.39
1.87
–3.77
–3.19
C54H30···7PT ···CO
0.59
663
1.50
1.87
–3.78
–3.19
C54H30···7PT ···NH3
0.58
662
2.12
1.87
–3.81
–3.23
C54H30···7PT ···SO2
0.58
665
2.02
1.86
–3.82
–3.24
C54H30···7PT ···NO2
0.84
822
1.80
1.51
–4.03
–3.19
C54H30···9PT
0.58
680
2.06
1.82
–3.76
–3.18
C54H30···9PT ···CO
0.58
680
2.05
1.82
–3.77
–3.19
C54H30···9PT ···NH3
0.58
680
1.96
1.82
–3.80
–3.22
C54H30···9PT ···SO2
0.59
683
1.89
1.82
–3.80
–3.21
C54H30···9PT ···NO2
0.62
820
2.42
1.51
–4.01
–3.39
Computed at the
(TD-)B3LYP/6-31G**
level of theory.
Figure 3
HOMOs and LUMOs
of (a,e) C54H30···3PT···CO,
(b,f) C54H30···3PT···NH3, (c,g) C54H30···3PT···SO2, and (d,h) C54H30···3PT···NO2 composite–analyte complexes.
HOMOs and LUMOs
of (a,e) C54H30···3PT···CO,
(b,f) C54H30···3PT···NH3, (c,g) C54H30···3PT···SO2, and (d,h) C54H30···3PT···NO2 composite–analyte complexes.Computed at the
(TD-)B3LYP/6-31G**
level of theory.The H–L gaps
in C54H30-nPT are 0.63, 0.59,
0.58, and 0.58 eV for n = 3,
5, 7, and 9, respectively. Upon complexation with CO, these gaps increase
slightly, for example, to 0.65 eV for n = 3, although
the effect saturates for larger oligomers and for n = 9, the H–L gap of the C54H30-9PT-CO
complex is 0.58 eV. These modifications of the gap are expected to
manifest as a decrease in conductivity in the presence of the analyte.The H–L gap of C54H30-nPT also increases upon complexation with NH3, for example,
to 0.65 eV in the n = 3 oligomer,
although the effect once again saturates quickly as a function of
the oligomer size.In contrast to the case of CO or NH3, the H–L
gap of the composite decreases very slightly in the presence of the
analyte to 0.63 eV for n = 3, although for larger
oligomers there is essentially no change in the gap upon complexation
with the analyte.The C54H30-nPT composites
show a considerable variation in the H–L gap after interaction
with NO2. In C54H30-3PT, the H–L
gap is 0.63 eV and it increases to 0.86 eV upon complexation with
NO2, whereas the gap in C54H30-5PT
increases from 0.59 to 0.65 eV in the presence of NO2.
The H–L gap in this system exhibits a significant variation
with respect to the size of the composite, as it is larger once again
(at 0.84 eV) for n = 7 and then smaller (0.62 eV)
for n = 9.
Electronic Properties and
Global Indices
The quantities
−EHOMO and −ELUMO are approximations to the ionization potential (IP)
and the electron affinity (EA), respectively. IP, EA, and global indices,
including chemical potential (μ), chemical hardness (η),
softness (s) electrophilicity (ω),[84] values are given in Table S1. The ionization
potential decreases as the size of nPT increases
in the composite. The IP in C54H30-3PT is 3.86
eV. The IP decreases to 3.78 eV in C54H30-5PT,
3.77 eV in C54H30-7PT, and 3.76 eV in C54H30-9PT composites. The IPs increase in the presence
of the analytes, with the largest changes occurring in the case of
NO2 and, for example, the IP of C54H30-3PT-NO2 is 4.45 eV. The HOMO energies of C54H30-3PT changes by 0.02, 0.05, 0.06, and 0.60 eV in the
presence of CO, NH3, SO2, and NO2, respectively, which is the same order as in the case of the charge-transfer
analysis. Similarly, the C54H30-nPT-NO2 complexes have lower EAs than other complexes.The global reactivity indices are very important to determine the
reactivity and stability of complexes. The global hardness is the
resistance of a species to deformation under the influence of an electric
field. The reactivity of species decreases but the stability of a
system increases with increase in hardness.[56] The chemical hardness of the C54H30-3PT composite
increases after complexation with CO, NH3, SO2, and NO2 but decreases as the size of nPT increases. The increase in chemical hardness results in decrease
in reactivity but increase in stability. Softness is the reciprocal
of chemical hardness, and its increases with the length of nPT. The values of the chemical potential also increase
after sensing the analytes, which indicates the reactivity of the
composite sensor toward analytes. The electrophilicity (ω) also
provides data about the stability and reactivity of complexes. The
results in the variation of global indices are in accordance with
the results of other properties (vide supra).
UV–Vis
Absorption Studies
The electronic excitation
properties in terms of charge transfer and optical band gaps play
a significant role in comprehending the conductivity and sensitivity
of the interacting species.[57] Time-dependent
density functional theory (TD-DFT) results at the B3LYP/6-31G** level,
including λmax, excitation energies and oscillator
strength of C54H30-nPT (n = 3, 5, 7, 9) and their complexes (C54H30-nPT-X), are listed in Table . The simulated UV–vis
spectra of C54H30-3PT-X are shown in Figure , whereas the spectra
of other complexes are given in Figure and S7–S9. These
spectra were computed from the lowest 40 singlet excitation energies,
using Gaussian broadening with a width parameter of 0.05 eV.
Figure 4
UV–vis
spectra of C54H30···3PT,
C54H30···3PT···CO,
C54H30···3PT···NH3, C54H30···3PT···SO2, and C54H30···3PT···NO2 composite–analyte complexes, computed at the TD-B3LYP/6-31G**
level.
UV–vis
spectra of C54H30···3PT,
C54H30···3PT···CO,
C54H30···3PT···NH3, C54H30···3PT···SO2, and C54H30···3PT···NO2 composite–analyte complexes, computed at the TD-B3LYP/6-31G**
level.The observed λmax of the C54H30-3PT composite is 590 nm, and it is red shifted to
603 nm upon complexation
with CO. The absorption maximum of the C54H30-5PT composite appears at 652 nm and increases to 656 nm in the C54H30-5PT-CO complex. The increase in absorption
maxima from 603 to 656 nm is due to increased conjugation with increasing
chain length of the oligomer, as well as a decrease in the band gap
within the complexes. The λmax of C54H30-7PT is 664 nm and remains essentially unchanged after complexation
with CO. The non-bonding electrons on the oxygen atom may lead to
π-antibonding interactions and therefore a larger shift in absorption
spectra. The same is true for C54H30-9PT. Apparently,
complexation with CO does not perturb the absorption spectrum of a
sufficiently large composite.The C54H30-nPT-NH3 complexes show a minimal
variation in their absorption maxima.
The λmax of the C54H30-3PT
composite is 590 nm and shows red shift to 595 nm upon the interaction
with NH3, whereas λmax shifts from 652
nm in C54H30-5PT to 651 nm in the C54H30-5PT-NH3 complex. Absorption maxima in C54H30-7PT and C54H30-9PT (664
nm and 680 nm, respectively) shift by ≤2 nm upon complexation
with NH3. As with the CO complexes, the C54H30-nPT-NH3 complexes show a very
small change in their absorption maxima and this is consistent with
less charge transfer in these complexes.The C54H30-nPT-SO2 complexes also exhibit
minimal changes in their absorption
spectra upon complexation. Although λmax of C54H30-3PT shifts from 590 to 604 nm upon complexation
with SO2, in the larger complexes the shift is ≤3
nm.The red shift in the absorption maximum of C54H30-3PT is very pronounced upon complexation with NO2, shifting from 590 nm to 808 nm, and for larger C54H30-nPT composites, the absorption maximum
shifts from 652 nm to 845 nm (n = 5), from 664 nm
to 822 nm (n = 7), and from 680 nm to 820 nm (n = 9). In the last two cases, the absorption maximum shifts
into the near-IR region. These very pronounced shifts are due to increased
conjugation within the composite and unpaired electrons of the nitrogen
atom in NO2.
Density-of-States Analysis
Density-of-states (DOS)
analysis helps in exploring the interaction between the composites
and the analytes during sensing, by approximating the number of energy
states that might be available to an electron at specific energies.
In a DOS spectrum (i.e., the spectrum of Kohn–Sham orbital
eigenvalues), relatively small variations in the region of the HOMO
and LUMO are expected to bring obvious changes in the corresponding
electric conductivity.[56] The LUMO peaks
of C54H30-nPT are observed
at −3.22 eV (n = 3), −3.19 eV (n = 5 and n = 7), and −3.18 eV (n = 9). The HOMO peaks are located at −3.85, −3.78,
−3.77 and −3.76 eV for n = 3, 5, 7,
and 9, respectively. Figure shows the DOS spectra of C54H30-3PT
and C54H30-3PT-X, with the analogous spectra
for larger oligomers shown in Figures S10–S12.
Figure 5
Spectra of Kohn–Sham eigenvalues of (a) C54H30···3PT···CO, (b) C54H30···3PT···NH3, (c) C54H30···3PT ···SO2, and (d) C54H30···3PT···NO2.
Spectra of Kohn–Sham eigenvalues of (a) C54H30···3PT···CO, (b) C54H30···3PT···NH3, (c) C54H30···3PT ···SO2, and (d) C54H30···3PT···NO2.The HOMO energy of C54H30-nPT increases as the number of nPT units increases
and, after interaction with analytes, new occupied energy states (HOMO)
are generated which facilitate the transfer of electrons between the
composite and analytes. Moreover, the interaction with analytes varies
the peak maxima at different energy levels and this variation in the
peak intensity is considered as an optimal condition for the working
mechanism of chemical sensors. The new virtual orbitals in C54H30-3PT-X are seen at −3.23, −3.27, −3.29,
and −2.56 eV for X = CO, NH3, SO2, and
NO2, respectively. The considerable variation in the optical
band gap of C54H30-3PT-NO2 is due
to the formation of a new orbital at −2.56 eV. The change in
the HOMO and LUMO energies with respect to the length of the nPT is small (Table ). The pronounced variation in the position of HOMO and LUMO
that is observed for X = SO2 or NO2, as compared
to X = CO or NH3, is consistent with the overall low sensitivity
of these composites toward the latter two analytes. The variation
in the shape and intensity of peaks demonstrates that the transport
of electrons can either increase or decrease upon complexation.
NCI Analysis
NCI analysis is used for visualizing NCIs
in real space, which is based on quantum mechanical electron density
and its derivatives;[58,59] specifically, the reduced density
gradient (RDG), which measures deviation from a homogeneous electron
distribution:NCI analysis distinguishes
color-coded RDG isosurfaces as dispersion interactions, hydrogen bonds,
or repulsive steric interactions. The RDG regions are colored as blue
(strong) or green (weak) for attractive interactions and red (strong)
or yellow (weak) for repulsive interactions. The blue region also
represents the hydrogen bonding and green region represents the dispersion
interactions. The three eigenvalues (λ1 ≤
λ2 ≤ λ3) of the Laplacian
of the density are computed in order to determine the different types
of non-bonded interactions. All of these eigenvalues are negative
at nuclei where density approaches a local maximum.For covalent
interactions, two of the eigenvalues are negative but the third is
positive. Finally, the second eigenvalue is positive for steric interactions
and this value is employed to differentiate the regions of the covalent
and non-covalent interactions. The covalent and non-covalent interaction
regions have negative eigenvalue (λ2 < 0), whereas
for steric interactions λ2 > 0. The stronger NCIs
have higher density values while weaker interactions have lower density
values as the strength of interactions is related to the magnitude
of s(r). Figure shows color-mapped isosurfaces of s(r), using an isocontour value of 0.5 a.u.,
and their respective scatter plots versus sign (λ2) ρ(r), which defines the NCI plot, for C54H30···3PT and C54H30···3PT-X. Analogous plots for other complexes
can be found in Figures S13–S15.
The color-mapped s(r) isosurface of
C54H30···3PT shows dispersion
interactions across an isosurface that closely resembles the contours
of the atomic van der Waals radii, which is typical of π-stacking
interactions.[60,61] In the NCI scatter plot, dispersion
interactions appear at low density [sgn(λ2) ρ
< −0.01 a.u.] and strongly repulsive interactions at larger
densities [sgn(λ2) ρ ∼ 0.02–0.04
a.u.].
Figure 6
Color-mapped RDG isosurfaces (left) and NCI scatter diagrams (right)
for C54H30···3PT···X
with (a) X = CO, (b) X = NH3, (c) X = SO2, and
(d) X = NO2.
Color-mapped RDG isosurfaces (left) and NCI scatter diagrams (right)
for C54H30···3PT···X
with (a) X = CO, (b) X = NH3, (c) X = SO2, and
(d) X = NO2.
Energy Decomposition Analysis
While NCI plots can be
used to obtain a qualitative view of NCIs, the (second-generation)
absolutely localized molecular orbital energy decomposition analysis
(ALMO-EDA)[62−64] approach is used to quantitatively decompose interaction
energies into physically meaningful components, as provided in Table for the C54H30···nPT-X complexes.
The total interaction energy of these complexes is decomposed into
ΔEPREP, ΔEFRZ, ΔEPOL, ΔEDISP, and ΔECT terms. The “preparation energy” ΔEPREP = ΔEHYBRID + ΔEGEOM includes both the energy required to change
the hybridization state of the fragments, which is not only relevant
in the context of NCIs but also the energy ΔEGEOM that is required to distort the geometry from its
isolated-fragment value to the geometry in the supramolecular complex.
The latter is significant only in the case of NO2. The
“frozen” energy component ΔEFRZ includes
both electrostatics (without polarization) and Pauli repulsion, that
is , it is the energy associated with bringing the fragments together
in the absence of density relaxation. In the present examples, this
term is dominated by Pauli repulsion because the analytes are not
large enough to experience significant electrostatic attraction. The
dispersion term (ΔEDISP) is a key component of the
NCIs in these systems and is (unsurprisingly) relatively large, as
supported by the NCI analysis. The polarization energy (ΔEPOL) is rather small for each of the analytes
except NO2. Finally, the charge-transfer term ΔECT is not insignificant, demonstrating that
a relatively small amount of the transferred change can manifest as
several kcal/mol in the interaction energy. However, the largest values
of ΔECT are observed in the case
of SO2 rather than NO2; thus, the ALMO-EDA charge-transfer
results do not correlate perfectly with the extent of charge transfer
that is predicted by natural population analysis. (There is no particular
reason that it should correlate perfectly, as the two procedures for
defining charge transfer are different.) Except for the case of NO2, where the polarization energy is quite large, the interactions
in these complexes are dominated by the ΔEDISP and ΔECT terms.
Table 5
Second-Generation ALMO-EDA Results
for C54H30···nPT-X Complexes (X = CO, NH3, SO2, and NO2), in kcal/mol
system
ΔEPREP
ΔEFRZ
ΔEPOL
ΔEDISP
ΔECT
Eint
C54H30···3PT···CO
0.0
3.1
–0.1
–3.9
–2.0
–3.0
C54H30···3PT ···NH3
0.0
1.7
–0.2
–3.8
–2.2
–4.4
C54H30···3PT ···SO2
0.0
8.1
–0.9
–8.0
–6.1
–6.9
C54H30···3PT···NO2
5.8
4.6
–36.0
–6.4
–2.7
–34.6
C54H30···5PT···CO
0.0
2.9
–0.1
–3.8
–1.8
–2.9
C54H30···5PT···NH3
0.0
1.8
–0.2
–3.7
–2.2
–4.2
C54H30···5PT···SO2
0.0
8.1
–0.9
–8.0
–6.0
–6.8
C54H30···5PT···NO2
–15.1
4.6
–14.7
–6.3
–2.7
–34.2
C54H30···7PT···CO
0.0
2.9
–0.1
–3.8
–1.9
–2.8
C54H30···7PT···NH3
0.0
1.9
–0.2
–3.5
–2.2
–4.1
C54H30···7PT···SO2
0.0
8.0
–0.9
–7.8
–5.9
–6.6
C54H30···7PT ···NO2
–15.2
4.7
–14.8
–6.2
–2.7
–34.3
C54H30···9PT ···CO
0.0
2.8
–0.1
–3.7
–1.9
–2.8
C54H30···9PT ···NH3
0.0
1.8
–0.2
–3.5
–2.2
–4.1
C54H30···9PT ···SO2
0.0
7.9
–0.9
–7.8
–5.9
–6.6
C54H30···9PT ···NO2
–15.3
4.7
–14.8
–6.3
–2.7
–34.4
Conclusions
The
detection of noxious gases in the environment is very important,
and various sensor materials based upon conducting polymers and their
composites are under investigation in this regard. Composites consisting
of conducting polymers with graphene are of great interest to increase
the sensitivity and performance of sensor devices, but the molecular
mechanism is unclear. DFT calculations performed herein explore possible
gas-sensing mechanisms in graphene/polythiophene composites, with
the composite modeled as C54H30···nPT for n = 3–9 thiophene units
and exploring analytes CO, NH3, SO2, and NO2. The trend of interaction energies between these analytes
and the composite is NO2 > SO2 > NH3 > CO. These differences arise due to variations in the
strength
of polar−π interactions. The interaction energies themselves
range from an estimated value of −44.3 kcal/mol for C54H30···3PT···NO2 to −2.4 kcal/mol for C54H30···3PT···CO.Analysis of the frontier molecular orbitals may elucidate how the
analyte induces conductivity changes in the composite sensor material.
The H–L gap of the composite is found to increase upon complexation
with each of the aforementioned analytes. UV–vis spectra of
the composites red-shifts upon complexation of the analyte, and the
predicted absorbance increases with increasing chain polymer length.
The NBO analysis helps in identifying the charge donor and acceptor
species during the sensing phenomenon and the amount of partial charges
on individual atoms in composite/analyte complexes. NCI isosurfaces
and scatter plots in terms of RDG reveal the nature of NCI regions
in C54H30···nPT···X complexes. The energy decomposition analysis
(second-generation ALMO-EDA) provides a quantitative measurement of
the NCIs and decompose them into different components that account
for the contribution of each component toward the overall interaction
energy. The dispersion and charge-transfer components contribute somewhat
more than other components to the interaction energy term. Frontier
molecular orbital analysis shows variation in the optical band gap
of the composite and absorption maxima also red-shifted upon interaction
with all analytes. One-electron DOS spectra indicate the observable
change upon interaction with NO2 and SO2.All these results point to the sensitivity of the C54H30···3PT composite among other graphene-nPT chains (5PT, 7PT, 9PT), as several of the aforementioned
changes upon complexation with the analyte are present in the 3PT
composite but washed out as the length of the polymer increases. Furthermore,
this study indicates that these composites are clearly more sensitive
toward NO2 as compared to other analytes, and to a lesser
extent toward SO2, with only small changes noted upon complexation
with either CO or NH3.
Computational Methodology
All calculations
are performed
using Q-Chem 5.2.[65] The Gauss View[66] and IQmol[67] graphical
interfaces are used to visualize results. The graphene/nPT ribbon models exhibit larger interaction energies as compared
to graphene/nPT sheet models.[68] Therefore, a C54H30-nPT graphene–polythiophene nanoribbon composite model is selected
as a sensor material to check its sensitivity against various gaseous
analytes: CO, NH3, SO2, and NO2.
Note that the H–L gap converges quickly with the molecular
size in linear acenes,[69] justifying our
use of the term “nanoribbons” for these materials.Various possible orientations of each analyte on the composite surface
are considered to obtain the lowest energy structure optimized at
the M06-2X/6-31G(d,p)[70,71] level of theory. Frequency calculations
are performed at the same level of theory to confirm these structures
as true minima. Based on our previous work,[36] the M06-2X/6-31G(d,p), M06-2X-D3/6-31G(d,p),[72,73] M06-2X-D3/6-31G(d,p) (CP), and ωB97M-V/def2-TZVPD (CP) level
of theories can be used for the reliable estimate of interaction energies,
where “CP” indicates the counterpoise correction to
reduce BSSE. We will use the ωB97M-V/def2-TZVPD level of theory
(with and without CP correction) to estimate interaction energies,
as this is one of the best-performing DFT methods for energies,[74,75] although its use requires basis sets of triple-ζ quality.[76] For reasons of cost, structure optimizations
are therefore performed at the M06-2X/6-31G(d,p) level. The SG-1 quadrature
grid was used for B3LYP, the SG-2 grid for ωB97M-V, and the
SG-3 grid for M06-2X.[77]Interaction
energies and their CP-corrected counterparts are calculated
aswhere is
the electronic energy of the composite–analyte
complex, is
the electronic energy of the composite,
and is the electronic energy of the analyte.
The quantity Eint,CP is the
CP-corrected interaction energy and EBSSE is the CP correction defined as the monomer energies (composite
and analyte) computed in the monomer basis set minus those computed
in the supersystem basis set. B3LYP is a reliable method to calculate
the electronic properties of materials based on conducting polymers.[3,78−81] Therefore, we have used B3LYP for the frontier molecular orbital
(HOMO–LUMO) analysis and other electronic properties. Chemical
potential (μ), hardness (η), softness (S), and electrophilicity
(ω) are reactivity descriptors. The chemical potential is estimated
(using Koopmans’ theorem[82]) aswhere EHOMO is
the energy of the highest occupied molecular orbital and ELUMO is the energy of lowest unoccupied molecular orbitals.
A similar approach is used for the hardnessSoftness and
electrophilicity are computed using[83]NBO analysis is used to study the distribution
of atomic partial
charges. The TD-DFT approach is used to simulate UV–vis spectra
of the isolated and complexed structures, at the B3LYP/6-31G** level
within the Tamm-Dancoff approximation. GaussSum software[84] is used to plot the DOS spectra. The Multiwfn
3.7 program[85] is used to make NCI plots,[58] which are color-mapped isosurfaces of the RDG, s(r). The scatter plots are obtained by plotting
RDG s(r) versus sign(λ2) ρ, where λ2 is the second largest eigenvalue
of the Hessian of electron density.[58] The
VMD 1.9.3 program[86] is used to render isosurfaces
of s(r), with a contour value of 0.5
a.u. The second-generation ALMO-EDA[62−64,87] is used to further break down the interaction energy into physically
meaningful components.