Literature DB >> 35067893

Dual Attention Mechanisms and Feature Fusion Networks Based Method for Predicting LncRNA-Disease Associations.

Yu Liu1,2, Yingying Yu3, Shimin Zhao4.   

Abstract

LncRNAs play a part in numerous momentous processes of biology such as disease diagnoses, preventions and treatments. The associations between various diseases and lncRNAs are one of the crucial approaches to learn the role and status of lncRNAs in human diseases. With the researches on lncRNA and diseases, multiple methods based on neural network have been employed to predict these associations. However, the deep and complicated characteristic representations of lncRNA-disease associations were failed to be extracted, and the discriminative contributions of the interactions, correlations, and similarities among miRNAs diseases, and lncRNAs for the correlation predictions were ignored. In this paper, based on the multibiology premise of lncRNAs, miRNAs, and diseases, a dual attention network was proposed to predict the model of lncRNA-disease associations for miRNAs, the disease characteristic matrix, and lncRNAs. Through two attention modules, we enable the model to learn the nonlinear, more complex and useful features of lncRNA, miRNA, and disease characteristic matrix. For the feature embedding matrix composed of lncRNA-disease, the connection between lncRNA-disease feature embedding matrix and lncRNA, miRNA, and disease characteristic matrix was enhanced through deconvolution and feature fusion layer. Compared with several latest methods, the method proposed in this paper can produce better performance. Researches on the cases of osteosarcoma, lung cancer, and gastric cancer have confirmed the effective recognition of potential lncRNA-disease associations.
© 2021. International Association of Scientists in the Interdisciplinary Areas.

Entities:  

Keywords:  Dual attention network; Feature deconvolution; Feature fusion; LncRNA-disease prediction; LncRNA–miRNA interaction

Mesh:

Substances:

Year:  2022        PMID: 35067893     DOI: 10.1007/s12539-021-00492-x

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  21 in total

Review 1.  Non-coding RNAs: regulators of disease.

Authors:  Ryan J Taft; Ken C Pang; Timothy R Mercer; Marcel Dinger; John S Mattick
Journal:  J Pathol       Date:  2010-01       Impact factor: 7.996

2.  A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network.

Authors:  Pengyao Ping; Lei Wang; Linai Kuang; Songtao Ye; Muhammad Faisal Buland Iqbal; Tingrui Pei
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-04-16       Impact factor: 3.710

3.  TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs.

Authors:  Annkatrin Bressin; Roman Schulte-Sasse; Davide Figini; Erika C Urdaneta; Benedikt M Beckmann; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

Review 4.  Structure and function of long noncoding RNAs in epigenetic regulation.

Authors:  Tim R Mercer; John S Mattick
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

Review 5.  Genetic variation in the non-coding genome: Involvement of micro-RNAs and long non-coding RNAs in disease.

Authors:  Barbara Hrdlickova; Rodrigo Coutinho de Almeida; Zuzanna Borek; Sebo Withoff
Journal:  Biochim Biophys Acta       Date:  2014-03-22

6.  SDLDA: lncRNA-disease association prediction based on singular value decomposition and deep learning.

Authors:  Min Zeng; Chengqian Lu; Fuhao Zhang; Yiming Li; Fang-Xiang Wu; Yaohang Li; Min Li
Journal:  Methods       Date:  2020-05-05       Impact factor: 3.608

7.  ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.

Authors:  David Heller; Ralf Krestel; Uwe Ohler; Martin Vingron; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

Review 8.  Applications of Deep Learning in Biomedicine.

Authors:  Polina Mamoshina; Armando Vieira; Evgeny Putin; Alex Zhavoronkov
Journal:  Mol Pharm       Date:  2016-03-29       Impact factor: 4.939

9.  Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity.

Authors:  Xing Chen; Chenggang Clarence Yan; Cai Luo; Wen Ji; Yongdong Zhang; Qionghai Dai
Journal:  Sci Rep       Date:  2015-06-10       Impact factor: 4.379

10.  A deep ensemble model to predict miRNA-disease association.

Authors:  Laiyi Fu; Qinke Peng
Journal:  Sci Rep       Date:  2017-11-03       Impact factor: 4.379

View more
  1 in total

1.  Editorial: Machine Learning-Based Methods for RNA Data Analysis.

Authors:  Lihong Peng; Jialiang Yang; Minxian Wang; Liqian Zhou
Journal:  Front Genet       Date:  2022-05-25       Impact factor: 4.772

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.